Ndufa3-ps1 (NADH:ubiquinone oxidoreductase subunit A3, pseudogene 1) - Rat Genome Database

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Gene: Ndufa3-ps1 (NADH:ubiquinone oxidoreductase subunit A3, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ndufa3-ps1
Name: NADH:ubiquinone oxidoreductase subunit A3, pseudogene 1
RGD ID: 1597747
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07025762.1; LOC685135; similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Ndufa3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81652,102,081 - 52,102,335 (+)NCBIGRCr8
mRatBN7.21645,369,428 - 45,369,682 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1645,369,386 - 45,369,682 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1650,768,620 - 50,768,874 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01654,135,678 - 54,135,932 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01649,408,016 - 49,408,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01648,513,453 - 48,513,707 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1648,513,432 - 48,513,707 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01648,225,746 - 48,226,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41648,592,845 - 48,593,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1643,372,990 - 43,373,244 (+)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164302484250166018Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044934   ⟹   ENSRNOP00000039573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1645,369,386 - 45,369,682 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000039573.4
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000039573   ⟸   ENSRNOT00000044934

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZMT2-F1-model_v2 AlphaFold D3ZMT2 1-91 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597747 AgrOrtholog
BioCyc Gene G2FUF-11380 BioCyc
Ensembl Genes ENSRNOG00000030778 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044934.5 UniProtKB/TrEMBL
InterPro NDUFA3 UniProtKB/TrEMBL
NCBI Gene 685135 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR15221 UniProtKB/TrEMBL
Pfam NADHdh_A3 UniProtKB/TrEMBL
PhenoGen Ndufa3-ps1 PhenoGen
RatGTEx ENSRNOG00000030778 RatGTEx
UniProt D3ZMT2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ndufa3-ps1  NADH:ubiquinone oxidoreductase subunit A3, pseudogene 1  LOC685135  similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC685135  similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)  AABR07025762.1    Data merged from RGD:15003836 737654 PROVISIONAL
2019-11-08 AABR07025762.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2006-11-20 LOC685135  similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)      Symbol and Name status set to provisional 70820 PROVISIONAL