Stx19 (syntaxin 19) - Rat Genome Database

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Gene: Stx19 (syntaxin 19) Rattus norvegicus
Analyze
Symbol: Stx19
Name: syntaxin 19
RGD ID: 1597703
Description: Predicted to enable SNAP receptor activity. Predicted to be involved in intracellular protein transport; membrane fusion; and vesicle-mediated transport. Predicted to be located in membrane. Orthologous to human STX19 (syntaxin 19); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC685180; similar to syntaxin 19; syntaxin-19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.211172,855 - 178,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11171,395 - 179,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx118,769,008 - 8,774,204 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0111,562,267 - 1,567,463 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.011667,048 - 672,244 (+)NCBIRnor_WKY
Rnor_6.071,145,002 - 1,149,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.071,133,989 - 1,138,965 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13182,296 - 187,494 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Stx19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.211172,855 - 178,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11171,395 - 179,191 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx118,769,008 - 8,774,204 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0111,562,267 - 1,567,463 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.011667,048 - 672,244 (+)NCBIRnor_WKY
Rnor_6.071,145,002 - 1,149,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.071,133,989 - 1,138,965 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera13182,296 - 187,494 (+)NCBICelera
Cytogenetic Map7q11NCBI
STX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38394,014,365 - 94,028,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl394,014,365 - 94,028,597 (-)EnsemblGRCh38hg38GRCh38
GRCh37393,733,209 - 93,747,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36395,215,903 - 95,230,144 (-)NCBINCBI36Build 36hg18NCBI36
Celera392,116,939 - 92,131,179 (-)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef391,095,915 - 91,110,158 (-)NCBIHuRef
CHM1_1393,696,301 - 93,710,542 (-)NCBICHM1_1
T2T-CHM13v2.0396,712,494 - 96,726,726 (-)NCBIT2T-CHM13v2.0
Stx19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391662,635,039 - 62,643,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1662,635,039 - 62,644,709 (+)EnsemblGRCm39 Ensembl
GRCm381662,814,676 - 62,822,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1662,814,676 - 62,824,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv371662,814,502 - 62,822,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361662,756,932 - 62,764,978 (+)NCBIMGSCv36mm8
Celera1663,123,377 - 63,131,418 (+)NCBICelera
Cytogenetic Map16C1.3NCBI
Stx19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554073,397,284 - 3,437,421 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554073,397,284 - 3,437,421 (+)NCBIChiLan1.0ChiLan1.0
STX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1397,759,197 - 97,773,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl397,759,213 - 97,760,097 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0391,079,351 - 91,093,741 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
STX19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1331,726,019 - 1,736,949 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl331,726,695 - 1,727,579 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,903,226 - 1,916,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0331,822,874 - 1,835,972 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl331,826,083 - 1,826,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,731,883 - 1,744,958 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0331,767,183 - 1,780,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,992,040 - 2,005,119 (-)NCBIUU_Cfam_GSD_1.0
Stx19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602155,368,450 - 155,369,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936666146,314 - 154,950 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936666145,946 - 147,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13165,867,924 - 165,874,123 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113165,858,563 - 165,872,678 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213176,541,458 - 176,557,579 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12286,673,139 - 86,688,288 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2286,673,654 - 86,691,972 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604179,994,530 - 80,009,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247896,744,858 - 6,756,127 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247896,740,514 - 6,757,694 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stx19
9 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat

Markers in Region
RH144230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.211172,117 - 172,238 (+)MAPPERmRatBN7.2
Rnor_6.071,144,265 - 1,144,385NCBIRnor6.0
Rnor_5.071,133,252 - 1,133,372UniSTSRnor5.0
Celera13181,559 - 181,679UniSTS
Cytogenetic Map11q21UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000102767   ⟹   ENSRNOP00000097435
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11171,395 - 179,191 (+)Ensembl
RefSeq Acc Id: NM_001109460   ⟹   NP_001102930
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.211172,855 - 178,053 (+)NCBI
Rnor_6.071,145,002 - 1,149,978 (+)NCBI
Rnor_5.071,133,989 - 1,138,965 (+)NCBI
Celera13182,296 - 187,494 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102930 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83249 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102930   ⟸   NM_001109460
- UniProtKB: A0A8I6ASN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000097435   ⟸   ENSRNOT00000102767
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597703 AgrOrtholog
BioCyc Gene G2FUF-22337 BioCyc
Ensembl Genes ENSRNOG00000070368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000097435 ENTREZGENE
  ENSRNOP00000097435.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000102767 ENTREZGENE
  ENSRNOT00000102767.1 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  STX19 UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene 685180 ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  PTHR19957:SF29 UniProtKB/TrEMBL
Pfam Syntaxin UniProtKB/TrEMBL
PhenoGen Stx19 PhenoGen
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A8I6ASN7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Stx19  syntaxin 19  LOC685180  similar to syntaxin 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685180  similar to syntaxin 19      Symbol and Name status set to provisional 70820 PROVISIONAL