Ubtfl6-ps1 (UBTF like 6, pseudogene1) - Rat Genome Database

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Gene: Ubtfl6-ps1 (UBTF like 6, pseudogene1) Rattus norvegicus
Analyze
Symbol: Ubtfl6-ps1
Name: UBTF like 6, pseudogene1
RGD ID: 1597382
Description: Orthologous to human UBTFL6 (UBTF like 6 (pseudogene)).
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC690305; similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1); UBTF like 6 (pseudogene); UBTF like 6, pseudogene 1; Ubtfl6-p1
RGD Orthologs
Human
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,755,204 - 23,762,107 (+)NCBIGRCr8
mRatBN7.2815,478,858 - 15,485,761 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0817,525,070 - 17,530,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0817,598,424 - 17,606,386 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,845,921 - 15,847,222 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera816,907,290 - 16,912,624 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19915186  


Genomics

Comparative Map Data
Ubtfl6-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,755,204 - 23,762,107 (+)NCBIGRCr8
mRatBN7.2815,478,858 - 15,485,761 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0817,525,070 - 17,530,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0817,598,424 - 17,606,386 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,845,921 - 15,847,222 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera816,907,290 - 16,912,624 (+)NCBICelera
Cytogenetic Map8q13NCBI
UBTFL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38297,636,585 - 97,637,765 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl297,636,780 - 97,637,803 (-)EnsemblGRCh38hg38GRCh38
GRCh37298,253,048 - 98,254,228 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36297,619,480 - 97,621,638 (-)NCBINCBI36Build 36hg18NCBI36
Celera292,457,050 - 92,459,089 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,018,746 - 92,019,926 (-)NCBIHuRef
CHM1_1298,257,405 - 98,258,585 (-)NCBICHM1_1
T2T-CHM13v2.0298,094,806 - 98,095,986 (-)NCBIT2T-CHM13v2.0
LOC100623257
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1922,972,930 - 22,981,782 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2925,605,921 - 25,621,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ubtfl6-ps1
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_085891
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera816,911,323 - 16,912,624 (+)RGD
RefSeq Acc Id: XR_086312
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0817,602,403 - 17,603,704 (+)NCBI
RGSC_v3.4815,845,921 - 15,847,222 (+)RGD

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597382 AgrOrtholog
BioCyc Gene G2FUF-31603 BioCyc
NCBI Gene 690305 ENTREZGENE
PhenoGen Ubtfl6-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-10 Ubtfl6-ps1  UBTF like 6, pseudogene1  Ubtfl6-ps1  UBTF like 6 (pseudogene)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2020-11-12 Ubtfl6-ps1  UBTF like 6 (pseudogene)  Ubtfl6-p1  UBTF like 6, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-09-17 Ubtfl6-p1  UBTF like 6, pseudogene 1  LOC690305  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690305  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  LOC686623  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  Data merged from RGD:1595025 1643240 APPROVED
2006-11-20 LOC690305  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686623  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)      Symbol and Name status set to provisional 70820 PROVISIONAL