Prdm11 (PR/SET domain 11) - Rat Genome Database

Name: Prdm11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Prdm11 (PR/SET domain 11) Rattus norvegicus

Analyze

Symbol:

Prdm11

Name:

PR/SET domain 11

RGD ID:

1597330

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in several processes, including negative regulation of cell growth; positive regulation of fibroblast apoptotic process; and regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Orthologous to human PRDM11 (PR/SET domain 11); INTERACTS WITH 17alpha-ethynylestradiol; acetamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC295936; LOC690358; PR domain 11; PR domain containing 11; PR domain-containing protein 11; RGD1305673; similar to PR domain containing 11; similar to PR-domain protein 11

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRDM11 (PR/SET domain 11)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Prdm11 (PR domain containing 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prdm11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRDM11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRDM11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prdm11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRDM11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRDM11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prdm11 (PR/SET domain 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LOC100505841 (zinc finger protein 474-like)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Prdm11 (PR domain containing 11)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PRDM11 (PR/SET domain 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prdm11 (PR domain containing 11)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	78,925,654 - 79,005,495 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,932,087 - 79,005,320 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	82,406,530 - 82,479,281 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	91,005,578 - 91,078,327 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	88,856,965 - 88,929,870 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	81,862,737 - 81,942,203 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,867,438 - 81,911,197 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	88,565,446 - 88,644,426 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	77,372,912 - 77,446,011 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	78,136,260 - 78,177,525 (-)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetamide (EXP)

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

Cuprizon (EXP)

cylindrospermopsin (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

folic acid (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

ozone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell growth (ISO)

negative regulation of DNA-templated transcription (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of fibroblast apoptotic process (ISO)

regulation of cell cycle (ISO)

regulation of MAPK cascade (ISO)

Cellular Component

cytosol (ISO)

nucleus (ISO)

Molecular Function

chromatin binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:25499759

Genomics

Comparative Map Data

Prdm11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	78,925,654 - 79,005,495 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,932,087 - 79,005,320 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	82,406,530 - 82,479,281 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	91,005,578 - 91,078,327 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	88,856,965 - 88,929,870 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	81,862,737 - 81,942,203 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,867,438 - 81,911,197 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	88,565,446 - 88,644,426 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	77,372,912 - 77,446,011 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	78,136,260 - 78,177,525 (-)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

PRDM11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	45,094,159 - 45,235,109 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	45,095,806 - 45,235,110 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	45,115,710 - 45,256,660 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	45,072,140 - 45,203,479 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	45,072,139 - 45,203,479	NCBI
Celera	11	45,262,624 - 45,394,602 (+)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	44,826,010 - 44,966,399 (+)	NCBI		HuRef
CHM1_1	11	45,114,923 - 45,255,765 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	45,251,156 - 45,392,625 (+)	NCBI		T2T-CHM13v2.0

Prdm11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	92,795,496 - 92,876,825 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	92,802,363 - 92,876,512 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	92,965,151 - 93,046,165 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	92,972,018 - 93,046,167 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	92,815,063 - 92,886,301 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	92,812,175 - 92,886,301 (-)	NCBI		MGSCv36	mm8
Celera	2	94,369,410 - 94,441,046 (-)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI

Prdm11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	2,614,236 - 2,657,448 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	2,616,410 - 2,655,381 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRDM11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	11	47,365,293 - 47,453,601 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	45,104,228 - 45,186,152 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	45,606,147 - 45,678,711 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	45,548,223 - 45,678,711 (+)	Ensembl	panpan1.1		panPan2

PRDM11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	44,110,808 - 44,205,229 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	44,117,186 - 44,199,284 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	42,839,996 - 42,932,929 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	44,768,374 - 44,861,369 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	44,773,870 - 44,855,455 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	44,271,344 - 44,276,822 (-)	NCBI		UMICH_Zoey_3.1
UMICH_Zoey_3.1	18	44,252,482 - 44,345,212 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	43,806,135 - 43,898,126 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	44,538,311 - 44,631,263 (-)	NCBI		UU_Cfam_GSD_1.0

Prdm11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	21,507,668 - 21,553,718 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	3,622,943 - 3,665,063 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936562	3,624,739 - 3,665,016 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRDM11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	17,177,964 - 17,263,880 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	17,172,089 - 17,264,089 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	18,653,980 - 18,701,349 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRDM11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	20,119,493 - 20,198,378 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	117,365,022 - 117,452,830 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prdm11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	3,132,563 - 3,201,355 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Prdm11
429 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	59
Count of miRNA genes:	52
Interacting mature miRNAs:	58
Transcripts:	ENSRNOT00000066526
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	61134348	89115068	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		12	2						7	18	20
Low	2	31	45	31	19	31	3	3	67	17	16	11	3
Below cutoff	1		10	10		10	5	8			5		5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000057007 ⟹ ENSRNOP00000053840

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	78,946,034 - 79,005,320 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000066526 ⟹ ENSRNOP00000061592

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	78,932,087 - 79,004,998 (-)	Ensembl
Rnor_6.0 Ensembl	3	81,867,438 - 81,911,197 (-)	Ensembl

RefSeq Acc Id:

NM_001271530 ⟹ NP_001258459

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	78,932,087 - 79,004,998 (-)	NCBI
Rnor_6.0	3	81,869,164 - 81,942,203 (-)	NCBI
Rnor_5.0	3	88,565,446 - 88,644,426 (-)	NCBI
Celera	3	78,136,260 - 78,177,525 (-)	NCBI

Sequence:

show sequence

CGACCGCCCCGTCCCGCCGCGTCCCGCCGCCCCGGCCCCGACCCGGCCCGCCGCCCCGCGTGGG
AACCCGCGAAGGACAGAATGACTGAGAACATGAAGGAGTGCTTGGCCCACACCAAGGCGGCTGT
AGGGGACATGGTGACAGTAGTGAAGACAGAGGTCTGCTCACCACTCCGGGACCAGGAGTATGGC
CAGCCCTGCTCTCGGAGACTGGAGCCATCTTCCATGGAAGTTGAACCTAAGAAACTAAAGGGAA
AACGTGACCTCATCGTGACCAAAAGCTTCCAGCAAGTGGACTTCTGGTTCTGCGAGTCCTGCCA
AGAGTACTTTGTGGATGAATGTCCGACCCATGGTCCCCCCGTGTTTGTGTCTGACACACCAGTG
CCTGTGGGCATCCCAGATCGGGCGGCCCTCACCATTCCACAGGGCATGGAGGTGGTAAAGGAAG
TTGGTGGAGAGAGCGATGTGCGGTGTATAAATGAAGTCGTCCCCAAGGGTCACATCTTTGGCCC
CTATGAGGGGCAGATCTCTACCCAGGACAAGTCAGCTGGCTTCTTCTCATGGCTGATTGTGGAC
AAGAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACCAAGGCCAACTGGATGAGGTACG
TGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCTA
CTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTAC
ATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGGGAGAGAAGA
GATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGACCTAAGGGGTCCCTCCCA
TTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGGGACCTCCAC
CCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCTGGAAGCCTCACTGGAGT
CTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAA
GTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCTGCAGGACCCCAGGGGAA
GGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACTGGAAGATGAAGAGGAGG
AGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCATCTGACCCCCACGAGCT
GCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAGAAAGTGCGGGAATTGCAGGCG
GAGCTAGATATGCTTAAGTCTGGAAAGGTGCCTGAGCCTCCCATTCTGCCACAGCAGGTACTGG
AGCTCCCAGAGTTCTCAGATCCTGCAGCTTCAGAGAGTATGGTCTCCTGCCCAGCCATCATGGA
GGACGACGACCAGGAAGTGGATTCTGCAGACGAATCTGTCTCCAATGACGTGATGACGGCAACC
GACGAACCCTCCAAGTTGTCCTCTGCCACGGGACGCCGCATCCGGCGCTTCAAGCAGGAGTGGC
TGAAGAAGTTCTGGTTCCTAAGGTACTCCCCGACCCTCAACGAGATGTGGTGCCATGTGTGCCG
CCAGTACACGGTGCAGTCCTCACGCACGTCCGCCTTCATCATCGGCTCCAAGCAGTTCAAGATC
CACACCATCAAACTGCACAGTCAGAGTAACCTGCACAAGAAGTGCCTGCAGCTGTACAAGCTGC
GCATGCACCCGGAGAAGACAGAGGAGATGTGCCGCAACATGACCCTGCTCTTCAACACTGCCTA
CCACCTGGCACTGGAGGGAAGGCCCTACCTCGACTTCCGGCCACTGGCAGAGCTGCTGCGTAAG
TGCGAGCTCAAGGTGGTGGACCAGTATATGAATGAGGGGGACTGCCAGATCCTCATCCACCACA
TCGCCCGGGCACTGCGAGAGGACCTGGTGGAGCGCATCCGTCAGTCACCCTGCCTCAGCATCAT
CCTGGATGGGCAGAGTGACGACCTCCTGGCTGACACGGTGGCCGTCTATGTGCAGTATACCAGC
AGCGATGGGCCCCCGGCCACAGAATTCCTATCCTTGCAGGAGCTAGGCTTCTCCAGCACAGAAA
GCTATCTCCAGGCTCTTGACCGGGCCTTTGCTGCTCTGGGCATCCGCTTACAGGATGAGAAGCC
AACTGTGGGCCTGGGAGTCGATGGGGCCAACATCACCGCCAGCTTGCGTGCCAGCATGTTCATG
ACCATCCGCAAGACGCTGCCATGGCTGCTGTGCTTGCCCTTCATGGTGCACCGGCCACACCTGG
AGATCCTGGATGCCATCAGTGGGAAGGAACTGCCCTGTCTAGAGGAGCTGGAGAACAACCTGAA
GCAGCTCCTCAGCTTCTACCGCTACTCACCACGCCTCATGTGTGAGCTGCGCTCCACGGCCTCT
ACCCTGTGCGAGGAGACTGAATTCCTGGGAGACATCCGTGCCGTGAGGTGGATCATCGGTGAGC
AGAATGTCTTGAATGCCCTTATCAAGGATTACCTGGAAGTGGTGGCCCACCTGAAGGATGTCAG
CAGCCAGACACAGCGGGCAGACGCTTCCGCCATAGCCCTGGCCCTGTTGCAGTTCCTCATGGAC
TACCAGTCCATCAAGCTCATCTACTTCCTGCTGGATGTGATTGCCGTGCTGTCACGCCTGGCCT
ACATCTTCCAGGGAGAGTACCTACTGGTGTCACAGGTGGATGACAAGATCGAGGAGGCAATCCA
GGAGATCAGTCGGCTTGCAGACTCCCCGGGAGAGTACCTGCAGGAATTTGAGGAGAATTTCCGA
GAGAGCTTCAATGGGATCGCTGTGAAGAACCTCAGGGTGGCAGAGGCCAAGTTTCAGTCTATCA
GGGAGAAGATCTGCCAGAAGACACAGGTCATTCTGGCTCAGAGGTTCGACTCCCGAAGCCGGGT
CTTTGTGAAGGCCTGCCAAGTGTTCGACTTAGCCGCCTGGCCCAGGAACAATGAGGAGCTTCTG
AGCTTCGGCAAGGAAGATATGGTTCAGATCTTTGACCACTTGGAAGCCATTCCTGCCTTCTCCC
GGGATGTGTGCCGTGAAGGGATGGACCCCCGGGGGAGCCTGCTGATGGAGTGGAGAGACCTCAA
GGCTGATTACTACACCAAAAATGGCTTCAAAGACCTCATAAGCCACATCTGCAAGTACAAGCAG
AGGTTTCCGCTCTTGAACAAGATCATTCAGGTCCTTAAAGTTCTCCCCACCTCCACTGCCTGCT
GTGAGAAAGGCCGAAGTGCCCTCCAGCGGGTCCGCAAAAACCACCGCTCACGCCTGACCCTGGA
GCAGCTCAGTGACCTGTTGACGATTGCTGTGAACGGACCACCCATCGCCAGCTTTGATGCCAAG
CGAGCCCTGGACAGCTGGTTTGAGGAGAAGTCTGGCAACAGCTACACACTTTCAGCCGAGGTCC
TCAGTAGGATGTCTGCCTTGGAGCAGAAGCCCATGCTGCAGGCTGTGGACCATGGCTCTGAATT
CTACCCAGACATGTAGGGGGGCTGCGCTCCAGAGGCCACAAAGACGGTGAATATTTTTTTAATC
TATACTCATAAGCTTTGATATATTATATAAATATATATTATATTATATTATATATATATAAACC
CACACTGAAATTTTTTTAAAAACTAAGTTAATTATGTCCACCA

hide sequence

RefSeq Acc Id:

XM_017592048 ⟹ XP_017447537

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	78,925,654 - 78,974,048 (-)	NCBI
Rnor_6.0	3	81,862,737 - 81,911,345 (-)	NCBI

Sequence:

show sequence

GGGGCAGGCCCGTGCTGCTCTCCCACCCCTCCCGCCGCCGCGGGCTTTGGGCCCCCGGTGGGGA
GCAGGGGGCTGGTGAGCCGAGGAGCAGGGGTGCTGCCAGCGGGGGCCCCGGGGAGTGAGTCACA
CACACACTCTGCTTGCCCAGTCCCGGGGCCCAGCACGGTCCCAAGGCCGAGCTACTGCACAGTC
CTCTGAAGAAGAGTGTCCCGGGGTCTGGCATGAGGACCGTGGGGAGGGGCTGCAGCCAGGTTCT
GTGGTCAGGGCGGACAGAATGACTGAGAACATGAAGGAGTGCTTGGCCCACACCAAGGCGGCTG
TAGGGGACATGGTGACAGTAGTGAAGACAGAGGTCTGCTCACCACTCCGGGACCAGGAGTATGG
CCAGCCCTGCTCTCGGAGACTGGAGCCATCTTCCATGGAAGTTGAACCTAAGAAACTAAAGGGA
AAACGTGACCTCATCGTGACCAAAAGCTTCCAGCAAGTGGACTTCTGGTTCTGCGAGTCCTGCC
AAGAGTACTTTGTGGATGAATGTCCGACCCATGGTCCCCCCGTGTTTGTGTCTGACACACCAGT
GCCTGTGGGCATCCCAGATCGGGCGGCCCTCACCATTCCACAGGGCATGGAGGTGGTAAAGGAA
GTTGGTGGAGAGAGCGATGTGCGGTGTATAAATGAAGTCGTCCCCAAGGGTCACATCTTTGGCC
CCTATGAGGGGCAGATCTCTACCCAGGACAAGTCAGCTGGCTTCTTCTCATGGCTGATTGTGGA
CAAGAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACCAAGGCCAACTGGATGAGGTAC
GTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCT
ACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTA
CATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGGGAGAGAAG
AGATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGACCTAAGGGGTCCCTCCC
ATTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGGGACCTCCA
CCCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCTGGAAGCCTCACTGGAG
TCTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCA
AGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCTGCAGGACCCCAGGGGA
AGGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACTGGAAGATGAAGAGGAG
GAGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCATCTGACCCCCACGAGC
TGCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAGAAAGTGCGGGAATTGCAGGC
GGAGCTAGATATGCTTAAGTCTGGAAAGGTGCCTGAGCCTCCCATTCTGCCACAGCAGGTACTG
GAGCTCCCAGAGTTCTCAGATCCTGCAGCTTCAGAGAGTATGGTCTCCTGCCCAGCCATCATGG
AGGACGACGACCAGGAAGTGGATTCTGCAGACGAATCTGTCTCCAATGACGTGATGACGGCAAC
CGACGAACCCTCCAAGTTGTCCTCTGCCACGGGACGCCGCATCCGGCGCTTCAAGCAGGAGTGG
CTGAAGAAGTTCTGGTTCCTAAGGTACTCCCCGACCCTCAACGAGATGTGGTGCCATGTGTGCC
GCCAGTACACGGTGCAGTCCTCACGCACGTCCGCCTTCATCATCGGCTCCAAGCAGTTCAAGAT
CCACACCATCAAACTGCACAGTCAGAGTAACCTGCACAAGAAGTGCCTGCAGCTGTACAAGCTG
CGCATGCACCCGGAGAAGACAGAGGAGATGTGCCGCAACATGACCCTGCTCTTCAACACTGCCT
ACCACCTGGCACTGGAGGGAAGGCCCTACCTCGACTTCCGGCCACTGGCAGAGCTGCTGCGTAA
GTGCGAGCTCAAGGTGGTGGACCAGTATATGAATGAGGGGGACTGCCAGATCCTCATCCACCAC
ATCGCCCGGGCACTGCGAGAGGACCTGGTGGAGCGCATCCGTCAGTCACCCTGCCTCAGCATCA
TCCTGGATGGGCAGAGTGACGACCTCCTGGCTGACACGGTGGCCGTCTATGTGCAGTATACCAG
CAGCGATGGGCCCCCGGCCACAGAATTCCTATCCTTGCAGGAGCTAGGCTTCTCCAGCACAGAA
AGCTATCTCCAGGCTCTTGACCGGGCCTTTGCTGCTCTGGGCATCCGCTTACAGGATGAGAAGC
CAACTGTGGGCCTGGGAGTCGATGGGGCCAACATCACCGCCAGCTTGCGTGCCAGCATGTTCAT
GACCATCCGCAAGACGCTGCCATGGCTGCTGTGCTTGCCCTTCATGGTGCACCGGCCACACCTG
GAGATCCTGGATGCCATCAGTGGGAAGGAACTGCCCTGTCTAGAGGAGCTGGAGAACAACCTGA
AGCAGCTCCTCAGCTTCTACCGCTACTCACCACGCCTCATGTGTGAGCTGCGCTCCACGGCCTC
TACCCTGTGCGAGGAGACTGAATTCCTGGGAGACATCCGTGCCGTGAGGTGGATCATCGGTGAG
CAGAATGTCTTGAATGCCCTTATCAAGGATTACCTGGAAGTGGTGGCCCACCTGAAGGATGTCA
GCAGCCAGACACAGCGGGCAGACGCTTCCGCCATAGCCCTGGCCCTGTTGCAGTTCCTCATGGA
CTACCAGTCCATCAAGCTCATCTACTTCCTGCTGGATGTGATTGCCGTGCTGTCACGCCTGGCC
TACATCTTCCAGGGAGAGTACCTACTGGTGTCACAGGTGGATGACAAGATCGAGGAGGCAATCC
AGGAGATCAGTCGGCTTGCAGACTCCCCGGGAGAGTACCTGCAGGAATTTGAGGAGAATTTCCG
AGAGAGCTTCAATGGGATCGCTGTGAAGAACCTCAGGGTGGCAGAGGCCAAGTTTCAGTCTATC
AGGGAGAAGATCTGCCAGAAGACACAGGTCATTCTGGCTCAGAGGTTCGACTCCCGAAGCCGGG
TCTTTGTGAAGGCCTGCCAAGTGTTCGACTTAGCCGCCTGGCCCAGGAACAATGAGGAGCTTCT
GAGCTTCGGCAAGGAAGATATGGTTCAGATCTTTGACCACTTGGAAGCCATTCCTGCCTTCTCC
CGGGATGTGTGCCGTGAAGGGATGGACCCCCGGGGGAGCCTGCTGATGGAGTGGAGAGACCTCA
AGGCTGATTACTACACCAAAAATGGCTTCAAAGACCTCATAAGCCACATCTGCAAGTACAAGCA
GAGGTTTCCGCTCTTGAACAAGATCATTCAGGTCCTTAAAGTTCTCCCCACCTCCACTGCCTGC
TGTGAGAAAGGCCGAAGTGCCCTCCAGCGGGTCCGCAAAAACCACCGCTCACGCCTGACCCTGG
AGCAGCTCAGTGACCTGTTGACGATTGCTGTGAACGGACCACCCATCGCCAGCTTTGATGCCAA
GCGAGCCCTGGACAGCTGGTTTGAGGAGAAGTCTGGCAACAGCTACACACTTTCAGCCGAGGTC
CTCAGTAGGATGTCTGCCTTGGAGCAGAAGCCCATGCTGCAGGCTGTGGACCATGGCTCTGAAT
TCTACCCAGACATGTAGGGGGGCTGCGCTCCAGAGGCCACAAAGACGGTGAATATTTTTTTAAT
CTATACTCATAAGCTTTGATATATTATATAAATATATATTATATTATATTATATATATATAAAC
CCACACTGAAATTTTTTTAAAAACTAAGTTAATTATGTCCACCAGAAGCCACTGGCAGCTTTCA
GAAAGGAGCAGTGTTGGCAACTGACTTTTGTCTCCGCACTTGGCAGCTGCAGCCTACACGGCAA
CCCATCTTCACTCACACAAGCGTGTTACGGGGCCACACGTGTTCCCACCCAACAGTCAAAGCGG
CATAAGCTAAATGACGGTTCTCTTGTCACTTGTAGGTGACTTGTTCTGTTTCTGTTCTCATGTA
TTGGTTGAGGTCTGGGGGTTGGGTGCTTGGCTTCTCCTTTTAGGTATGGTTTTATGACTGGGGG
CCTCCGTGGTCTCCACATTGGCATTCTGGTCTAGATACACTACATCGGGGTTTTCATGGGGATG
AATTGGATTTCTGGACTGGACTATCAGGTCTTTCTCCCCTCGCCTGACTTTAGCTTGGGAGACC
TTTCGTTTTTCATTTCCTGATTGATCCCTTCCCTCGTCCCTCGTCCCACGTCAAATGCATCTCC
CTCAACTGTGAGCCCACTCGCTCCCCCATGTCACCTCTCCCAGCCCCATGTCAGTTCCTTTCTT
CCGGCCTCTGGAGTTTAAAGGTATGAGCTGTTACACTGAATGCAATTGTTTTTTCACATTTGAG
CTTGAAATCTTGGGAGGGGACGGAAAGGTAAACTTTATGCCTCCCCCTCCTTTCCAGCCACTGG
GGGATAAAGTATATACGTCCATTTAGATCTTGGGCTGTTGGGGAGACAATGAGCCAAGTGATCT
AAACTCCAACAGGACCACATTTTATTTATTTTTTTTTTGGCTAAAACCAGGTAAAATGAAAAGT
GTATATTCAATTTTCACATTTTTTTTGTCTTTATAATTAAGGAATGTGTTGCGGGGTTTGTGTT
TCTTCTCGTAATCAAGGAGTAGCTGTTTTGTAGTTCAAGGGCGGAATCTATCAATGCAAGTCGT
GCCCTGGGCTACAGAGAACTCAGAGAGTGCCTAGAGAGGTTGTTCCTTTGCAAAAGGCTGACGA
CCTGCTCCTCAGCCTGGCAGGGAAGTCACAGGACACCAGGCAGGGTTCTCTGCCTCTGAACTCT
TCCTATTTTGAATAGAGTTGAGATGTCCTATAGAAAAGGAGAAAACAGAAGGTGAGGCGGGGTT
CTCAAGGTACAAGCATGTATACATACTTACACACACATACATATACACACGCACACATACACAC
ATACACACACACACATATATTTCAACTACATATAAGCTTTAGAAATGCCTCTTGCCTCCCCCCA
TGGGGTGGGGGCAGACAGTGGTTTAAACAAGAGGAGCCTGACCAATGTTCATTTACCTACCAGT
ATACCTCGCGAAGAGTTTTCAGAAATGTGCATGAGCTGTTTAAAACCTTCTCTGCAGTTTCCAC
ATCCGACCTCTGCAGTCAGTGCAGATCCCAGAATGTGGATACAGGGTTGTCTTTGGGGAAGGGA
GGAAGATCTGAAGGACCTGCCCGTGGTCAGTTCTGCAGAGAACTGTCCCTCTCCTTCAGTGGGG
CACTGGGGATCCAACCCCATGCCCTCAACCTACCTGGCTGGGTCTATAAGTATGTGGTAGCTTT
CTTCCTTCTGGGTTCGTCTCACCTCTGAGGCCTCACGGAAATGTCATTAACACTGAACATGTTG
CTACCCTTTCCTGGTTCTGCAGTCTGCCCGTCCTCCCTCAGATCCTCCCTTTGCCTCCATGGTC
TTGGTGCTAAGATAACTTTAGAATCATTGCTGCTAGCCAATAGCTTTTCATGATATAAATATTA
TATATATATTATATTATTTTTGAAATGTTTTTGTTTTCAACAGTGATGTAGCATGTTAAAACAA
ACAAAACTGAAGAAACTAAAACCTGGGTCTTTCCAACTGTCCCACTGCCAGGCCTCTTATGCTG
CCTTCTTCAACAAGTTGATACACCCCCGCCTGGTGACTTCCACCCCTCATCTCACTCTGGTCCC
CACCTCTGAGCAGGGAGAGTTAGCAGGAACTAAATAGGAAAATGCAAAGCCCCTTTCAGAGGCC
TGGGAATCCCCAGCCTCAGTCCCCTTGCCCACCCACGCTGAGCTTGTGTCTCTCTCCAGCTGCC
CCTCCTACCCTGGGCCAAGCCTAGCTGGAGCCACACGGGCTGCTGTTGTGAAGCACAAGGTCTC
CACTTGCCTGCCTATCTCCTCCCCGGGACCCTGTCTCCTTACAGATGCAGGCTTTGGTCTGGGA
CATTTTCATTGAAAATCTAATGGGCCAAGGTTGGTTCAGAGTATTGATGGCTGGCAAGGCGGGT
CTCCCATGGGCAGCCTGCAGGCATCAACAGTGGCCTGGGTCTTTCCTTCTTGCCAATGGTTGCC
TTACACCTCTCCTTCCCAGTGCATGGGGCTTCCTCACCCAGGAAGGGACCTCTCCCAGATGGCC
CTAAGCCAGACATGTGAAACCAGGACTGACCATTCCCTCCCAAGGGGCTGTAGCTGGGTGAGCT
CAAGTCTCAGGCAAGGAGACAGGTTGTGCCAGGCCAAGCCAGTGTTACCCGGGTCTCCTCAAGA
TACCCAGGAGCAGTGGCCCTGCCTTGTGACCTAGAAGAATGAGCTGTTCTGGCAGCATCACGTG
ACTGCAGAGTCACCCATTCACTGGTCCTCTGCCTCTCCAACCCCACTTCTGCCCTCTGCTGCAA
TGGCCTCTGCCTCAGAGCCACTGAAAAGCTGAGCTCTCCTGTTGTCTTACATTTGGTCTCTGAA
ACTCTGGGTGCTGGGGACTCTGGATGCAGACAAGCAGGGAGGTGACAGATGCTGTACGGGCCAC
TTTGCCTTGGGATAATGAAAGGGAAGCTGAGGGTGAACCCCTTGCAGTCTTTTCTCAGCTTGGA
TGCTCCCTGGGAGGGTCAGGGAGTTCCATATGTGATGCCCTGTGATTTCTGGCCTATTCTCACA
CTTCCCTTGAAGAAAGGCTTGGGTCAGCCCACCATTTCATGTCTGGACGTAGAACCATATGCCT
GGCTCACCTCATATCTTGGCTGGGTTAACAGACTGTGGGGAGGTAGGGCTTAGAGTGTAAATGT
CTCTGGAGTAGAACTGGTAGTCACGGGCACAGAATGAAATGTATCTGTGGGGCTGAGATTTATT
CCCTCGGGGCTAATTGTGGCTTTCACTGGCTCACATCGAGTAGAGCAGGAAGTGGGGCAGTGTG
GAAGGCTGAGGCTCGTGGCTGTTGTGCCAAATGGGTACCTTGCTGAACCCTCGGAGCAAAGGAA
AACAATGACCACTGAGGCCGATGGCCCACTCAGCTCCGTGGGCAGCTCCTGCCCTGTTAGAATC
CCTCCAGAGACAGCAGAGTGCAGGCACCACAGGTGCCAGGGCTTTTGTTTTGTAATGTCTGTGT
GCAGCGTCTCATGATGTCAGGTCCAGCGGCCTTCCCTCATCCTCCCTGGGGAAAGAGAGCACAC
GGAGCTCCAGGGCCCTGTGTCGCCAGGTTCTGCCCGGAGCCCTGAATCTGAGGTCCCCAGAGCT
TCAGCCCTCTGCGCAGAGTGTGTGTTCCCAGCCTGAGTTGTTCTGCTGAGGGTTCTGTTCGGCT
TGTTCGCACCAGATTTTGGTGTGATCTTTGATTTTGAGCAAGGACCTTGGAGTGACCTGAAGCA
CCTTTTAAATGTCTTTCATTTGTTTGGAGGGAATAGGGAAAGGTGTGGAGAGAGTAGACATGGC
CGTATAGAGGGAGGAATGGACTTAAGATGTTACCCAGCCTGGGCTTTGACGACTGGTAGCTCAC
TGCTGCCCACCTGGAGCCGATGAGGCCCCAGCCTGGAGAGGCTGGATGGGTTGAGGTCTAATTT
CTAGAAAACTCCCTTGTTTGCATTTCTCCCCCCTTGGAAGAAATCCCAACCCGTTTTCGGTATA
TAGTCTGGGTTAAATTCTAACCCAGCTTTGTGCTCTTTTGTTTTCTTTTTGTGGTCCATGCACC
CCATTGGGGGACAGGCCCCAGGTTCCCTGGAGCTCACGTGTGCCCTGGATATCCTCTAAGAAGC
AGCCCAGCCAGACTGGGCTAGCAACTGAAGCAGGGAGAGTGAGCCTCCAGAGTGAGGAAAGGAG
GGCACAGCCAGCAGTTAAGCTGGGATCGCTCCCTTATACACTGCCCTGGATTCCAATTTGGCTG
TTTCTCCAATCCTGGAGGGGGGAAAGTGTACCAGGTGTGCATGGTCCTTCTCCTCAGAGGAATG
CTCTTTCCTAGTCCTCTGTTAGTCAGGGTCATTTTAAGAGTCTTTGAGGTAATCTTTGCATGTT
AGTGAGAGGGAGAAAAAGTGCCCTTTGGAGAGGAAAATAGTACAGCCCTCCTCTTCGATCTAGC
ACTCTCTCCCCTTCCCCCATCCCTTCAAGTGGTATCACCCTAGAAATACCTATGCAATCCAGTC
TCCCTGGGGAGGCTGTGCATGGAGGCAGGGGTATGTGCAGTGAGTGTATCATACTGATGCTAAG
GTATATCAATTGTATATACGGACATATACAGTACGTATACATGCAGAGTAAGAGAGTAAATCAC
GTCTATATATCTATAAATAATATCCTATATATTTATACATTTTTTATGTTTTAAATAGATATAA
AAATAGTCTATAGAGCTGGAAGGGTGGTGGGGAAGTCTGGTGCTGGGTTGGGCTAGGGGAAGGG
GACAGGGCTCTGGAGAGGAGGTAGGAATGCTCATCAGAATAGGTTACTAGCCGCTGAGGGGGGC
GTCTTCCTTGGGGTGTTGGAGAGGAGGGCAGCTGTGTTCAGGCTCTCTCCATGCACTTTCTCTC
CTTTCCTGCCAGCAAGGCTGAGGCTGGAAGGAGATACCCCCGAGCTCCGACTGCAGTACCCCTA
CCTCCCACCACCGCCAGCCCGCACTTAGCTGGTCATTGCTGCTTAGCAGTGGGGGGTGGGACTT
GGTCCCCGACCCCTAGTGGAGGGACCTCTGCACAAATTCCCCAATACCCGCCCCTGTCAGGAAT
GAGCAACGTTGATGGCAATAGGAAAGGGGCACCTGGGATGAACAATTATCCAGAAAGACGACGA
CGTCAGCCCCATTCCCCGGATGCCTCTGCCCCCCCCCCGGGAGGCCAAGCCTCTAAAGTACAAC
CGTCCTGGCCACCTTCACCTATTCAACCACTGTCTCTAGAGCACTGGGAGTTGAGGAGGGCAGC
GTGAGCTTTAGGTAGCGCTGCCTTTCCCCATGCAGAGGCCCCCCCCTGGTGGAAGAGATGTATC
TGCACACTGACATTTTCAATGGCAACTCAAGTTCAGGAGCAGGGCCCTGGCCCACCCGACCCTG
CACAGCTGCAGCAGCTGTTGGCTGTACTCAGGACAATGTTGTCCCCTCTTCCCAAACCAACCAA
GCAGCCCAACCTCCTCCTCTGTGACAGCAGGTTTAGGTTTAGTTCACAAACACTGTTCTCATTC
TGTGACCAGATACCCAAGCCCACTCTTTCTGGGGAGGGTATCTTCTTCAGCTTGTCCCCAGGCA
ACACCCCCCCTCAAGCTGGGTGGGGGTGTCTGGGGTCCCTGGGAGTCCCGGCTGCTTGTGCAGC
CCAGATGGGAGTCAGAAGCTCCCAACTCCTCAATTTCCTTCTCTCTCCTGGAAGCAGAAGGGGT
CTGATGACAGATCCCTCCCTGCTCTTGAGAGCAGCCTGCCTTTGGGCTACATAAACACACTCAT
TTCTCATACCGAGCCTTCGCAGGTCTCCCCCTGCTTTTCCTCACCATCCTACCAACGGACCTCA
GTCTCCAGCAGACCAGTCCTGTACCACAGTTGAGACCAGGTCTGCTCTGCCAATGCCCACCTCC
TTGAGCCACAGCTAGCTGCCAACTGGGCTGAACACCTTCTAGTGCCTGGCTCAGTGGAGTTCAG
GACCAATGGCCCAAGCCTTCCTCCAGCTACAGTGGGTCAGAGCTTGGCCAGGGGATAGGCATTC
TCAGTAGCAATCCCACAATGCACTGTACCTCAGAGAGAGAGAACACGCCACAGGGCATCGAGTG
AACCAGCCTCCATGCAGAGGGGGCAACGGCTCACAATACTGCTCAGGAGAAGACAAAGGTCAGG
CTGTCCTAGGGCACCCCTCAGTCTACCCTTTGGCCTCTCCGGAAGAACCAGTAGTCTTTTTCAG
CCCTGATCTCTCTCCTCCTCTCCACCCCCAAGCTGCTGAACCATTTTTCATGTCAATCACAAAG
AAAAAAAATAAAGTGGGGGTGGGGAGGGAACTCCTAGGAGCCTATTACCACATGCATATTAATA
TGTTAATACTTTCTTTATTAAAAACAATTCTCAATGTTATTATTTGGCAGACTGTGCTTTATAG
TACCTGTGTGTCGGGGCTAGAACACTGGATACAAATAGAGCTATGCTGGTTTATAATCTGTATG
CAGCGTCTTTCCTTTTGTCACATTATCCTCGTAATGTAAGAAGATTATTAATAAAAGCATTTAA
ATTGACA

hide sequence

RefSeq Acc Id:

XM_017592049 ⟹ XP_017447538

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	78,925,654 - 78,974,444 (-)	NCBI
Rnor_6.0	3	81,862,737 - 81,911,515 (-)	NCBI

Sequence:

show sequence

GGGCCGGGCTGCGCTCCCCGCCGCGAAGGACAGAATGACTGAGAACATGAAGGAGTGCTTGGCC
CACACCAAGGCGGCTGTAGGGGACATGGTGACAGTAGTGAAGACAGAGGTCTGCTCACCACTCC
GGGACCAGGAGTATGGCCAGCCCTGCTCTCGGAGACTGGAGCCATCTTCCATGGAAGTTGAACC
TAAGAAACTAAAGGGAAAACGTGACCTCATCGTGACCAAAAGCTTCCAGCAAGTGGACTTCTGG
TTCTGCGAGTCCTGCCAAGAGTACTTTGTGGATGAATGTCCGACCCATGGTCCCCCCGTGTTTG
TGTCTGACACACCAGTGCCTGTGGGCATCCCAGATCGGGCGGCCCTCACCATTCCACAGGGCAT
GGAGGTGGTAAAGGAAGTTGGTGGAGAGAGCGATGTGCGGTGTATAAATGAAGTCGTCCCCAAG
GGTCACATCTTTGGCCCCTATGAGGGGCAGATCTCTACCCAGGACAAGTCAGCTGGCTTCTTCT
CATGGCTGATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACCAAGGC
CAACTGGATGAGGTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAG
CACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCT
GGTACAGCGAGGACTACATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCT
GGCCCGGGGAGAGAAGAGATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGAC
CTAAGGGGTCCCTCCCATTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTG
ATGAGGGGGACCTCCACCCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCT
GGAAGCCTCACTGGAGTCTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTC
ATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCT
GCAGGACCCCAGGGGAAGGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACT
GGAAGATGAAGAGGAGGAGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCA
TCTGACCCCCACGAGCTGCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAGAAAG
TGCGGGAATTGCAGGCGGAGCTAGATATGCTTAAGTCTGGAAAGGTGCCTGAGCCTCCCATTCT
GCCACAGCAGGTACTGGAGCTCCCAGAGTTCTCAGATCCTGCAGCTTCAGAGAGTATGGTCTCC
TGCCCAGCCATCATGGAGGACGACGACCAGGAAGTGGATTCTGCAGACGAATCTGTCTCCAATG
ACGTGATGACGGCAACCGACGAACCCTCCAAGTTGTCCTCTGCCACGGGACGCCGCATCCGGCG
CTTCAAGCAGGAGTGGCTGAAGAAGTTCTGGTTCCTAAGGTACTCCCCGACCCTCAACGAGATG
TGGTGCCATGTGTGCCGCCAGTACACGGTGCAGTCCTCACGCACGTCCGCCTTCATCATCGGCT
CCAAGCAGTTCAAGATCCACACCATCAAACTGCACAGTCAGAGTAACCTGCACAAGAAGTGCCT
GCAGCTGTACAAGCTGCGCATGCACCCGGAGAAGACAGAGGAGATGTGCCGCAACATGACCCTG
CTCTTCAACACTGCCTACCACCTGGCACTGGAGGGAAGGCCCTACCTCGACTTCCGGCCACTGG
CAGAGCTGCTGCGTAAGTGCGAGCTCAAGGTGGTGGACCAGTATATGAATGAGGGGGACTGCCA
GATCCTCATCCACCACATCGCCCGGGCACTGCGAGAGGACCTGGTGGAGCGCATCCGTCAGTCA
CCCTGCCTCAGCATCATCCTGGATGGGCAGAGTGACGACCTCCTGGCTGACACGGTGGCCGTCT
ATGTGCAGTATACCAGCAGCGATGGGCCCCCGGCCACAGAATTCCTATCCTTGCAGGAGCTAGG
CTTCTCCAGCACAGAAAGCTATCTCCAGGCTCTTGACCGGGCCTTTGCTGCTCTGGGCATCCGC
TTACAGGATGAGAAGCCAACTGTGGGCCTGGGAGTCGATGGGGCCAACATCACCGCCAGCTTGC
GTGCCAGCATGTTCATGACCATCCGCAAGACGCTGCCATGGCTGCTGTGCTTGCCCTTCATGGT
GCACCGGCCACACCTGGAGATCCTGGATGCCATCAGTGGGAAGGAACTGCCCTGTCTAGAGGAG
CTGGAGAACAACCTGAAGCAGCTCCTCAGCTTCTACCGCTACTCACCACGCCTCATGTGTGAGC
TGCGCTCCACGGCCTCTACCCTGTGCGAGGAGACTGAATTCCTGGGAGACATCCGTGCCGTGAG
GTGGATCATCGGTGAGCAGAATGTCTTGAATGCCCTTATCAAGGATTACCTGGAAGTGGTGGCC
CACCTGAAGGATGTCAGCAGCCAGACACAGCGGGCAGACGCTTCCGCCATAGCCCTGGCCCTGT
TGCAGTTCCTCATGGACTACCAGTCCATCAAGCTCATCTACTTCCTGCTGGATGTGATTGCCGT
GCTGTCACGCCTGGCCTACATCTTCCAGGGAGAGTACCTACTGGTGTCACAGGTGGATGACAAG
ATCGAGGAGGCAATCCAGGAGATCAGTCGGCTTGCAGACTCCCCGGGAGAGTACCTGCAGGAAT
TTGAGGAGAATTTCCGAGAGAGCTTCAATGGGATCGCTGTGAAGAACCTCAGGGTGGCAGAGGC
CAAGTTTCAGTCTATCAGGGAGAAGATCTGCCAGAAGACACAGGTCATTCTGGCTCAGAGGTTC
GACTCCCGAAGCCGGGTCTTTGTGAAGGCCTGCCAAGTGTTCGACTTAGCCGCCTGGCCCAGGA
ACAATGAGGAGCTTCTGAGCTTCGGCAAGGAAGATATGGTTCAGATCTTTGACCACTTGGAAGC
CATTCCTGCCTTCTCCCGGGATGTGTGCCGTGAAGGGATGGACCCCCGGGGGAGCCTGCTGATG
GAGTGGAGAGACCTCAAGGCTGATTACTACACCAAAAATGGCTTCAAAGACCTCATAAGCCACA
TCTGCAAGTACAAGCAGAGGTTTCCGCTCTTGAACAAGATCATTCAGGTCCTTAAAGTTCTCCC
CACCTCCACTGCCTGCTGTGAGAAAGGCCGAAGTGCCCTCCAGCGGGTCCGCAAAAACCACCGC
TCACGCCTGACCCTGGAGCAGCTCAGTGACCTGTTGACGATTGCTGTGAACGGACCACCCATCG
CCAGCTTTGATGCCAAGCGAGCCCTGGACAGCTGGTTTGAGGAGAAGTCTGGCAACAGCTACAC
ACTTTCAGCCGAGGTCCTCAGTAGGATGTCTGCCTTGGAGCAGAAGCCCATGCTGCAGGCTGTG
GACCATGGCTCTGAATTCTACCCAGACATGTAGGGGGGCTGCGCTCCAGAGGCCACAAAGACGG
TGAATATTTTTTTAATCTATACTCATAAGCTTTGATATATTATATAAATATATATTATATTATA
TTATATATATATAAACCCACACTGAAATTTTTTTAAAAACTAAGTTAATTATGTCCACCAGAAG
CCACTGGCAGCTTTCAGAAAGGAGCAGTGTTGGCAACTGACTTTTGTCTCCGCACTTGGCAGCT
GCAGCCTACACGGCAACCCATCTTCACTCACACAAGCGTGTTACGGGGCCACACGTGTTCCCAC
CCAACAGTCAAAGCGGCATAAGCTAAATGACGGTTCTCTTGTCACTTGTAGGTGACTTGTTCTG
TTTCTGTTCTCATGTATTGGTTGAGGTCTGGGGGTTGGGTGCTTGGCTTCTCCTTTTAGGTATG
GTTTTATGACTGGGGGCCTCCGTGGTCTCCACATTGGCATTCTGGTCTAGATACACTACATCGG
GGTTTTCATGGGGATGAATTGGATTTCTGGACTGGACTATCAGGTCTTTCTCCCCTCGCCTGAC
TTTAGCTTGGGAGACCTTTCGTTTTTCATTTCCTGATTGATCCCTTCCCTCGTCCCTCGTCCCA
CGTCAAATGCATCTCCCTCAACTGTGAGCCCACTCGCTCCCCCATGTCACCTCTCCCAGCCCCA
TGTCAGTTCCTTTCTTCCGGCCTCTGGAGTTTAAAGGTATGAGCTGTTACACTGAATGCAATTG
TTTTTTCACATTTGAGCTTGAAATCTTGGGAGGGGACGGAAAGGTAAACTTTATGCCTCCCCCT
CCTTTCCAGCCACTGGGGGATAAAGTATATACGTCCATTTAGATCTTGGGCTGTTGGGGAGACA
ATGAGCCAAGTGATCTAAACTCCAACAGGACCACATTTTATTTATTTTTTTTTTGGCTAAAACC
AGGTAAAATGAAAAGTGTATATTCAATTTTCACATTTTTTTTGTCTTTATAATTAAGGAATGTG
TTGCGGGGTTTGTGTTTCTTCTCGTAATCAAGGAGTAGCTGTTTTGTAGTTCAAGGGCGGAATC
TATCAATGCAAGTCGTGCCCTGGGCTACAGAGAACTCAGAGAGTGCCTAGAGAGGTTGTTCCTT
TGCAAAAGGCTGACGACCTGCTCCTCAGCCTGGCAGGGAAGTCACAGGACACCAGGCAGGGTTC
TCTGCCTCTGAACTCTTCCTATTTTGAATAGAGTTGAGATGTCCTATAGAAAAGGAGAAAACAG
AAGGTGAGGCGGGGTTCTCAAGGTACAAGCATGTATACATACTTACACACACATACATATACAC
ACGCACACATACACACATACACACACACACATATATTTCAACTACATATAAGCTTTAGAAATGC
CTCTTGCCTCCCCCCATGGGGTGGGGGCAGACAGTGGTTTAAACAAGAGGAGCCTGACCAATGT
TCATTTACCTACCAGTATACCTCGCGAAGAGTTTTCAGAAATGTGCATGAGCTGTTTAAAACCT
TCTCTGCAGTTTCCACATCCGACCTCTGCAGTCAGTGCAGATCCCAGAATGTGGATACAGGGTT
GTCTTTGGGGAAGGGAGGAAGATCTGAAGGACCTGCCCGTGGTCAGTTCTGCAGAGAACTGTCC
CTCTCCTTCAGTGGGGCACTGGGGATCCAACCCCATGCCCTCAACCTACCTGGCTGGGTCTATA
AGTATGTGGTAGCTTTCTTCCTTCTGGGTTCGTCTCACCTCTGAGGCCTCACGGAAATGTCATT
AACACTGAACATGTTGCTACCCTTTCCTGGTTCTGCAGTCTGCCCGTCCTCCCTCAGATCCTCC
CTTTGCCTCCATGGTCTTGGTGCTAAGATAACTTTAGAATCATTGCTGCTAGCCAATAGCTTTT
CATGATATAAATATTATATATATATTATATTATTTTTGAAATGTTTTTGTTTTCAACAGTGATG
TAGCATGTTAAAACAAACAAAACTGAAGAAACTAAAACCTGGGTCTTTCCAACTGTCCCACTGC
CAGGCCTCTTATGCTGCCTTCTTCAACAAGTTGATACACCCCCGCCTGGTGACTTCCACCCCTC
ATCTCACTCTGGTCCCCACCTCTGAGCAGGGAGAGTTAGCAGGAACTAAATAGGAAAATGCAAA
GCCCCTTTCAGAGGCCTGGGAATCCCCAGCCTCAGTCCCCTTGCCCACCCACGCTGAGCTTGTG
TCTCTCTCCAGCTGCCCCTCCTACCCTGGGCCAAGCCTAGCTGGAGCCACACGGGCTGCTGTTG
TGAAGCACAAGGTCTCCACTTGCCTGCCTATCTCCTCCCCGGGACCCTGTCTCCTTACAGATGC
AGGCTTTGGTCTGGGACATTTTCATTGAAAATCTAATGGGCCAAGGTTGGTTCAGAGTATTGAT
GGCTGGCAAGGCGGGTCTCCCATGGGCAGCCTGCAGGCATCAACAGTGGCCTGGGTCTTTCCTT
CTTGCCAATGGTTGCCTTACACCTCTCCTTCCCAGTGCATGGGGCTTCCTCACCCAGGAAGGGA
CCTCTCCCAGATGGCCCTAAGCCAGACATGTGAAACCAGGACTGACCATTCCCTCCCAAGGGGC
TGTAGCTGGGTGAGCTCAAGTCTCAGGCAAGGAGACAGGTTGTGCCAGGCCAAGCCAGTGTTAC
CCGGGTCTCCTCAAGATACCCAGGAGCAGTGGCCCTGCCTTGTGACCTAGAAGAATGAGCTGTT
CTGGCAGCATCACGTGACTGCAGAGTCACCCATTCACTGGTCCTCTGCCTCTCCAACCCCACTT
CTGCCCTCTGCTGCAATGGCCTCTGCCTCAGAGCCACTGAAAAGCTGAGCTCTCCTGTTGTCTT
ACATTTGGTCTCTGAAACTCTGGGTGCTGGGGACTCTGGATGCAGACAAGCAGGGAGGTGACAG
ATGCTGTACGGGCCACTTTGCCTTGGGATAATGAAAGGGAAGCTGAGGGTGAACCCCTTGCAGT
CTTTTCTCAGCTTGGATGCTCCCTGGGAGGGTCAGGGAGTTCCATATGTGATGCCCTGTGATTT
CTGGCCTATTCTCACACTTCCCTTGAAGAAAGGCTTGGGTCAGCCCACCATTTCATGTCTGGAC
GTAGAACCATATGCCTGGCTCACCTCATATCTTGGCTGGGTTAACAGACTGTGGGGAGGTAGGG
CTTAGAGTGTAAATGTCTCTGGAGTAGAACTGGTAGTCACGGGCACAGAATGAAATGTATCTGT
GGGGCTGAGATTTATTCCCTCGGGGCTAATTGTGGCTTTCACTGGCTCACATCGAGTAGAGCAG
GAAGTGGGGCAGTGTGGAAGGCTGAGGCTCGTGGCTGTTGTGCCAAATGGGTACCTTGCTGAAC
CCTCGGAGCAAAGGAAAACAATGACCACTGAGGCCGATGGCCCACTCAGCTCCGTGGGCAGCTC
CTGCCCTGTTAGAATCCCTCCAGAGACAGCAGAGTGCAGGCACCACAGGTGCCAGGGCTTTTGT
TTTGTAATGTCTGTGTGCAGCGTCTCATGATGTCAGGTCCAGCGGCCTTCCCTCATCCTCCCTG
GGGAAAGAGAGCACACGGAGCTCCAGGGCCCTGTGTCGCCAGGTTCTGCCCGGAGCCCTGAATC
TGAGGTCCCCAGAGCTTCAGCCCTCTGCGCAGAGTGTGTGTTCCCAGCCTGAGTTGTTCTGCTG
AGGGTTCTGTTCGGCTTGTTCGCACCAGATTTTGGTGTGATCTTTGATTTTGAGCAAGGACCTT
GGAGTGACCTGAAGCACCTTTTAAATGTCTTTCATTTGTTTGGAGGGAATAGGGAAAGGTGTGG
AGAGAGTAGACATGGCCGTATAGAGGGAGGAATGGACTTAAGATGTTACCCAGCCTGGGCTTTG
ACGACTGGTAGCTCACTGCTGCCCACCTGGAGCCGATGAGGCCCCAGCCTGGAGAGGCTGGATG
GGTTGAGGTCTAATTTCTAGAAAACTCCCTTGTTTGCATTTCTCCCCCCTTGGAAGAAATCCCA
ACCCGTTTTCGGTATATAGTCTGGGTTAAATTCTAACCCAGCTTTGTGCTCTTTTGTTTTCTTT
TTGTGGTCCATGCACCCCATTGGGGGACAGGCCCCAGGTTCCCTGGAGCTCACGTGTGCCCTGG
ATATCCTCTAAGAAGCAGCCCAGCCAGACTGGGCTAGCAACTGAAGCAGGGAGAGTGAGCCTCC
AGAGTGAGGAAAGGAGGGCACAGCCAGCAGTTAAGCTGGGATCGCTCCCTTATACACTGCCCTG
GATTCCAATTTGGCTGTTTCTCCAATCCTGGAGGGGGGAAAGTGTACCAGGTGTGCATGGTCCT
TCTCCTCAGAGGAATGCTCTTTCCTAGTCCTCTGTTAGTCAGGGTCATTTTAAGAGTCTTTGAG
GTAATCTTTGCATGTTAGTGAGAGGGAGAAAAAGTGCCCTTTGGAGAGGAAAATAGTACAGCCC
TCCTCTTCGATCTAGCACTCTCTCCCCTTCCCCCATCCCTTCAAGTGGTATCACCCTAGAAATA
CCTATGCAATCCAGTCTCCCTGGGGAGGCTGTGCATGGAGGCAGGGGTATGTGCAGTGAGTGTA
TCATACTGATGCTAAGGTATATCAATTGTATATACGGACATATACAGTACGTATACATGCAGAG
TAAGAGAGTAAATCACGTCTATATATCTATAAATAATATCCTATATATTTATACATTTTTTATG
TTTTAAATAGATATAAAAATAGTCTATAGAGCTGGAAGGGTGGTGGGGAAGTCTGGTGCTGGGT
TGGGCTAGGGGAAGGGGACAGGGCTCTGGAGAGGAGGTAGGAATGCTCATCAGAATAGGTTACT
AGCCGCTGAGGGGGGCGTCTTCCTTGGGGTGTTGGAGAGGAGGGCAGCTGTGTTCAGGCTCTCT
CCATGCACTTTCTCTCCTTTCCTGCCAGCAAGGCTGAGGCTGGAAGGAGATACCCCCGAGCTCC
GACTGCAGTACCCCTACCTCCCACCACCGCCAGCCCGCACTTAGCTGGTCATTGCTGCTTAGCA
GTGGGGGGTGGGACTTGGTCCCCGACCCCTAGTGGAGGGACCTCTGCACAAATTCCCCAATACC
CGCCCCTGTCAGGAATGAGCAACGTTGATGGCAATAGGAAAGGGGCACCTGGGATGAACAATTA
TCCAGAAAGACGACGACGTCAGCCCCATTCCCCGGATGCCTCTGCCCCCCCCCCGGGAGGCCAA
GCCTCTAAAGTACAACCGTCCTGGCCACCTTCACCTATTCAACCACTGTCTCTAGAGCACTGGG
AGTTGAGGAGGGCAGCGTGAGCTTTAGGTAGCGCTGCCTTTCCCCATGCAGAGGCCCCCCCCTG
GTGGAAGAGATGTATCTGCACACTGACATTTTCAATGGCAACTCAAGTTCAGGAGCAGGGCCCT
GGCCCACCCGACCCTGCACAGCTGCAGCAGCTGTTGGCTGTACTCAGGACAATGTTGTCCCCTC
TTCCCAAACCAACCAAGCAGCCCAACCTCCTCCTCTGTGACAGCAGGTTTAGGTTTAGTTCACA
AACACTGTTCTCATTCTGTGACCAGATACCCAAGCCCACTCTTTCTGGGGAGGGTATCTTCTTC
AGCTTGTCCCCAGGCAACACCCCCCCTCAAGCTGGGTGGGGGTGTCTGGGGTCCCTGGGAGTCC
CGGCTGCTTGTGCAGCCCAGATGGGAGTCAGAAGCTCCCAACTCCTCAATTTCCTTCTCTCTCC
TGGAAGCAGAAGGGGTCTGATGACAGATCCCTCCCTGCTCTTGAGAGCAGCCTGCCTTTGGGCT
ACATAAACACACTCATTTCTCATACCGAGCCTTCGCAGGTCTCCCCCTGCTTTTCCTCACCATC
CTACCAACGGACCTCAGTCTCCAGCAGACCAGTCCTGTACCACAGTTGAGACCAGGTCTGCTCT
GCCAATGCCCACCTCCTTGAGCCACAGCTAGCTGCCAACTGGGCTGAACACCTTCTAGTGCCTG
GCTCAGTGGAGTTCAGGACCAATGGCCCAAGCCTTCCTCCAGCTACAGTGGGTCAGAGCTTGGC
CAGGGGATAGGCATTCTCAGTAGCAATCCCACAATGCACTGTACCTCAGAGAGAGAGAACACGC
CACAGGGCATCGAGTGAACCAGCCTCCATGCAGAGGGGGCAACGGCTCACAATACTGCTCAGGA
GAAGACAAAGGTCAGGCTGTCCTAGGGCACCCCTCAGTCTACCCTTTGGCCTCTCCGGAAGAAC
CAGTAGTCTTTTTCAGCCCTGATCTCTCTCCTCCTCTCCACCCCCAAGCTGCTGAACCATTTTT
CATGTCAATCACAAAGAAAAAAAATAAAGTGGGGGTGGGGAGGGAACTCCTAGGAGCCTATTAC
CACATGCATATTAATATGTTAATACTTTCTTTATTAAAAACAATTCTCAATGTTATTATTTGGC
AGACTGTGCTTTATAGTACCTGTGTGTCGGGGCTAGAACACTGGATACAAATAGAGCTATGCTG
GTTTATAATCTGTATGCAGCGTCTTTCCTTTTGTCACATTATCCTCGTAATGTAAGAAGATTAT
TAATAAAAGCATTTAAATTGACA

hide sequence

RefSeq Acc Id:

XM_039105882 ⟹ XP_038961810

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	78,925,654 - 79,005,495 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258459	(Get FASTA)	NCBI Sequence Viewer
	XP_017447537	(Get FASTA)	NCBI Sequence Viewer
	XP_017447538	(Get FASTA)	NCBI Sequence Viewer
	XP_038961810	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79583	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001258459 ⟸ NM_001271530

- UniProtKB:

D4A985 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTENMKECLAHTKAAVGDMVTVVKTEVCSPLRDQEYGQPCSRRLEPSSMEVEPKKLKGKRDLIV
TKSFQQVDFWFCESCQEYFVDECPTHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKEVGGESD
VRCINEVVPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISRE
EREQNLLAFQHSERIYFRACRDIRPGERLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREK
AEQALDNPEDLRGPSHFPVLKQGRSPYKRSFDEGDLHPQAKKKKIDLIFKDVLEASLESANAEG
RQLALSTSLVIRKVPKYQDDDYGRAALTQGICRTPGEGDWKVPQKVAKELGPLEDEEEEHTSFK
ADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKVPEPPILPQQVLELPEFS
DPAASESMVSCPAIMEDDDQEVDSADESVSNDVMTATDEPSKLSSATGRRIRRFKQEWLKKFWF
LRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEK
TEEMCRNMTLLFNTAYHLALEGRPYLDFRPLAELLRKCELKVVDQYMNEGDCQILIHHIARALR
EDLVERIRQSPCLSIILDGQSDDLLADTVAVYVQYTSSDGPPATEFLSLQELGFSSTESYLQAL
DRAFAALGIRLQDEKPTVGLGVDGANITASLRASMFMTIRKTLPWLLCLPFMVHRPHLEILDAI
SGKELPCLEELENNLKQLLSFYRYSPRLMCELRSTASTLCEETEFLGDIRAVRWIIGEQNVLNA
LIKDYLEVVAHLKDVSSQTQRADASAIALALLQFLMDYQSIKLIYFLLDVIAVLSRLAYIFQGE
YLLVSQVDDKIEEAIQEISRLADSPGEYLQEFEENFRESFNGIAVKNLRVAEAKFQSIREKICQ
KTQVILAQRFDSRSRVFVKACQVFDLAAWPRNNEELLSFGKEDMVQIFDHLEAIPAFSRDVCRE
GMDPRGSLLMEWRDLKADYYTKNGFKDLISHICKYKQRFPLLNKIIQVLKVLPTSTACCEKGRS
ALQRVRKNHRSRLTLEQLSDLLTIAVNGPPIASFDAKRALDSWFEEKSGNSYTLSAEVLSRMSA
LEQKPMLQAVDHGSEFYPDM

hide sequence

RefSeq Acc Id:	XP_017447538 ⟸ XM_017592049
- Peptide Label:	isoform X1
- UniProtKB:	D4A985 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTENMKECLAHTKAAVGDMVTVVKTEVCSPLRDQEYGQPCSRRLEPSSMEVEPKKLKGKRDLIV TKSFQQVDFWFCESCQEYFVDECPTHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKEVGGESD VRCINEVVPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISRE EREQNLLAFQHSERIYFRACRDIRPGERLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREK AEQALDNPEDLRGPSHFPVLKQGRSPYKRSFDEGDLHPQAKKKKIDLIFKDVLEASLESANAEG RQLALSTSLVIRKVPKYQDDDYGRAALTQGICRTPGEGDWKVPQKVAKELGPLEDEEEEHTSFK ADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKVPEPPILPQQVLELPEFS DPAASESMVSCPAIMEDDDQEVDSADESVSNDVMTATDEPSKLSSATGRRIRRFKQEWLKKFWF LRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEK TEEMCRNMTLLFNTAYHLALEGRPYLDFRPLAELLRKCELKVVDQYMNEGDCQILIHHIARALR EDLVERIRQSPCLSIILDGQSDDLLADTVAVYVQYTSSDGPPATEFLSLQELGFSSTESYLQAL DRAFAALGIRLQDEKPTVGLGVDGANITASLRASMFMTIRKTLPWLLCLPFMVHRPHLEILDAI SGKELPCLEELENNLKQLLSFYRYSPRLMCELRSTASTLCEETEFLGDIRAVRWIIGEQNVLNA LIKDYLEVVAHLKDVSSQTQRADASAIALALLQFLMDYQSIKLIYFLLDVIAVLSRLAYIFQGE YLLVSQVDDKIEEAIQEISRLADSPGEYLQEFEENFRESFNGIAVKNLRVAEAKFQSIREKICQ KTQVILAQRFDSRSRVFVKACQVFDLAAWPRNNEELLSFGKEDMVQIFDHLEAIPAFSRDVCRE GMDPRGSLLMEWRDLKADYYTKNGFKDLISHICKYKQRFPLLNKIIQVLKVLPTSTACCEKGRS ALQRVRKNHRSRLTLEQLSDLLTIAVNGPPIASFDAKRALDSWFEEKSGNSYTLSAEVLSRMSA LEQKPMLQAVDHGSEFYPDM hide sequence

RefSeq Acc Id:	XP_017447537 ⟸ XM_017592048
- Peptide Label:	isoform X1
- UniProtKB:	D4A985 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTENMKECLAHTKAAVGDMVTVVKTEVCSPLRDQEYGQPCSRRLEPSSMEVEPKKLKGKRDLIV TKSFQQVDFWFCESCQEYFVDECPTHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKEVGGESD VRCINEVVPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISRE EREQNLLAFQHSERIYFRACRDIRPGERLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREK AEQALDNPEDLRGPSHFPVLKQGRSPYKRSFDEGDLHPQAKKKKIDLIFKDVLEASLESANAEG RQLALSTSLVIRKVPKYQDDDYGRAALTQGICRTPGEGDWKVPQKVAKELGPLEDEEEEHTSFK ADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKVPEPPILPQQVLELPEFS DPAASESMVSCPAIMEDDDQEVDSADESVSNDVMTATDEPSKLSSATGRRIRRFKQEWLKKFWF LRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEK TEEMCRNMTLLFNTAYHLALEGRPYLDFRPLAELLRKCELKVVDQYMNEGDCQILIHHIARALR EDLVERIRQSPCLSIILDGQSDDLLADTVAVYVQYTSSDGPPATEFLSLQELGFSSTESYLQAL DRAFAALGIRLQDEKPTVGLGVDGANITASLRASMFMTIRKTLPWLLCLPFMVHRPHLEILDAI SGKELPCLEELENNLKQLLSFYRYSPRLMCELRSTASTLCEETEFLGDIRAVRWIIGEQNVLNA LIKDYLEVVAHLKDVSSQTQRADASAIALALLQFLMDYQSIKLIYFLLDVIAVLSRLAYIFQGE YLLVSQVDDKIEEAIQEISRLADSPGEYLQEFEENFRESFNGIAVKNLRVAEAKFQSIREKICQ KTQVILAQRFDSRSRVFVKACQVFDLAAWPRNNEELLSFGKEDMVQIFDHLEAIPAFSRDVCRE GMDPRGSLLMEWRDLKADYYTKNGFKDLISHICKYKQRFPLLNKIIQVLKVLPTSTACCEKGRS ALQRVRKNHRSRLTLEQLSDLLTIAVNGPPIASFDAKRALDSWFEEKSGNSYTLSAEVLSRMSA LEQKPMLQAVDHGSEFYPDM hide sequence

RefSeq Acc Id:

ENSRNOP00000061592 ⟸ ENSRNOT00000066526

RefSeq Acc Id:	XP_038961810 ⟸ XM_039105882
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000053840 ⟸ ENSRNOT00000057007

Protein Domains

Myb-like SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A985-F1-model_v2	AlphaFold	D4A985	1-1172	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1597330	AgrOrtholog
BioCyc Gene	G2FUF-48677	BioCyc
Ensembl Genes	ENSRNOG00000008674	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000053840.4	UniProtKB/TrEMBL
	ENSRNOP00000061592	ENTREZGENE
	ENSRNOP00000061592.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057007.4	UniProtKB/TrEMBL
	ENSRNOT00000066526	ENTREZGENE
	ENSRNOT00000066526.4	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
InterPro	Myb_DNA-bind_5	UniProtKB/TrEMBL
	PRDM11_PR/SET	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:690358	UniProtKB/TrEMBL
NCBI Gene	690358	ENTREZGENE
PANTHER	MYB-RELATED TRANSCRIPTION FACTOR, PARTNER OF PROFILIN	UniProtKB/TrEMBL
	MYB-RELATED TRANSCRIPTION FACTOR, PARTNER OF PROFILIN	UniProtKB/TrEMBL
	PR/SET DOMAIN 11	UniProtKB/TrEMBL
	RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	Myb_DNA-bind_5	UniProtKB/TrEMBL
PhenoGen	Prdm11	PhenoGen
PROSITE	SET	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
UniProt	D3ZMU9_RAT	UniProtKB/TrEMBL
	D4A985	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Prdm11	PR/SET domain 11	Prdm11	PR domain 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Prdm11	PR domain 11	Prdm11	PR domain containing 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-02	LOC690358	similar to PR domain containing 11	Prdm11	PR domain containing 11	Data Merged	737654	APPROVED
2012-10-02	Prdm11	PR domain containing 11	LOC690358	similar to PR domain containing 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Prdm11	PR domain containing 11	RGD1305673	similar to PR-domain protein 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305673	similar to PR-domain protein 11	RGD1305673_predicted	similar to PR-domain protein 11 (predicted)	'predicted' is removed	2292626	APPROVED
2008-01-09	RGD1305673_predicted	similar to PR-domain protein 11 (predicted)	LOC687414	similar to PR-domain protein 11	Data Merged	1643240	APPROVED
2008-01-09	LOC690358	similar to PR domain containing 11	LOC687419	similar to PR domain containing 11	Data Merged	1643240	APPROVED
2006-11-20	LOC690358	similar to PR domain containing 11			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687419	similar to PR domain containing 11			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687414	similar to PR-domain protein 11			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1305673_predicted	similar to PR-domain protein 11 (predicted)	LOC295936_predicted	similar to PR-domain protein 11 (predicted)	Symbol and Name status set to approved	1331353	APPROVED
2005-01-20	RGD1305673_predicted	similar to PR-domain protein 11 (predicted)	LOC295936_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC295936_predicted	similar to PR-domain protein 11 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar