Ubtfl1-ps1 (upstream binding transcription factor like 1, pseudogene 1) - Rat Genome Database

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Gene: Ubtfl1-ps1 (upstream binding transcription factor like 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Ubtfl1-ps1
Name: upstream binding transcription factor like 1, pseudogene 1
RGD ID: 1597314
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC690378; similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1); Ubtfl1l-ps1; upstream binding transcription factor like 1 like, pseudogene 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8824,232,568 - 24,233,793 (+)NCBIGRCr8
mRatBN7.2815,956,242 - 15,957,467 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0818,166,177 - 18,173,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0818,234,924 - 18,242,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4816,322,327 - 16,329,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera817,363,063 - 17,385,163 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Ubtfl1-ps1
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31582 BioCyc
NCBI Gene 690378 ENTREZGENE
PhenoGen Ubtfl1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-10 Ubtfl1-ps1  upstream binding transcription factor like 1, pseudogene 1  Ubtfl1l-ps1  upstream binding transcription factor like 1 like, pseudogene 1  Name and Symbol changed 629549 APPROVED
2022-06-10 Ubtfl1l-ps1  upstream binding transcription factor like 1 like, pseudogene 1  LOC690378  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC690378  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  LOC686686  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)  Data merged from RGD:1594962 1643240 APPROVED
2006-11-20 LOC690378  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686686  similar to Nucleolar transcription factor 1 (Upstream-binding factor 1) (UBF-1)      Symbol and Name status set to provisional 70820 PROVISIONAL