Atp5pd-ps1 (ATP synthase peripheral stalk subunit d, pseudogene 1) - Rat Genome Database

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Gene: Atp5pd-ps1 (ATP synthase peripheral stalk subunit d, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Atp5pd-ps1
Name: ATP synthase peripheral stalk subunit d, pseudogene 1
RGD ID: 1597193
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d, pseudogene 1; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1; Atp5h-ps1; MGC72861
Related Functional Gene: Atp5pd  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25166,164,323 - 166,164,914 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5168,869,338 - 168,869,929 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05170,690,744 - 170,691,335 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05170,653,294 - 170,653,885 (-)NCBIRnor_WKY
Rnor_6.05173,003,500 - 173,004,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05176,478,622 - 176,479,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,410,864 - 172,411,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,365,838 - 164,366,429 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Atp5pd-ps1
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
RH128098  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210100,657,809 - 100,659,111 (+)MAPPERmRatBN7.2
mRatBN7.25166,164,415 - 166,164,608 (+)MAPPERmRatBN7.2
Rnor_6.05173,003,593 - 173,003,785NCBIRnor6.0
Rnor_6.010103,967,452 - 103,968,753NCBIRnor6.0
Rnor_5.05176,478,715 - 176,478,907UniSTSRnor5.0
RGSC_v3.45172,410,957 - 172,411,149UniSTSRGSC3.4
Celera5164,365,931 - 164,366,123UniSTS
Celera1099,232,983 - 99,234,284UniSTS
RH 3.4 Map16486.79UniSTS
Cytogenetic Map5q36UniSTS


Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38921 BioCyc
NCBI Gene 56080 ENTREZGENE
PhenoGen Atp5pd-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-21 Atp5pd-ps1  ATP synthase peripheral stalk subunit d, pseudogene 1  Atp5h-ps1  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1  Name and Symbol changed 629549 APPROVED
2011-12-01 Atp5h-ps1  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1  Atp5h-ps1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Atp5h-ps1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d, pseudogene 1      Symbol and Name status set to provisional 70820 PROVISIONAL