Ppp2r5c-ps1 (protein phosphatase 2, regulatory subunit B', gamma, pseudogene 1) - Rat Genome Database

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Gene: Ppp2r5c-ps1 (protein phosphatase 2, regulatory subunit B', gamma, pseudogene 1) Rattus norvegicus
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Symbol: Ppp2r5c-ps1
Name: protein phosphatase 2, regulatory subunit B', gamma, pseudogene 1
RGD ID: 1597007
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC501961; similar to gamma isoform of regulatory subunit B56, protein phosphatase 2A
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81512,498,743 - 12,504,570 (-)NCBIGRCr8
mRatBN7.21510,068,016 - 10,073,843 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01511,316,673 - 11,322,515 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01515,356,593 - 15,362,420 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41511,542,993 - 11,548,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1510,078,754 - 10,084,596 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Ppp2r5c-ps1
73 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_146299
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01515,356,593 - 15,362,420 (-)NCBI
RefSeq Acc Id: XR_146614
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1510,078,769 - 10,084,596 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14407 BioCyc
NCBI Gene 501961 ENTREZGENE
PhenoGen Ppp2r5c-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ppp2r5c-ps1  protein phosphatase 2, regulatory subunit B', gamma, pseudogene 1  LOC501961  similar to gamma isoform of regulatory subunit B56, protein phosphatase 2A  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC501961  similar to gamma isoform of regulatory subunit B56, protein phosphatase 2A      Symbol and Name status set to provisional 70820 PROVISIONAL