Atp5mf (ATP synthase membrane subunit f) - Rat Genome Database

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Gene: Atp5mf (ATP synthase membrane subunit f) Rattus norvegicus
Analyze
Symbol: Atp5mf
Name: ATP synthase membrane subunit f
RGD ID: 1596067
Description: Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Involved in ATP metabolic process. Part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to human ATP5MF (ATP synthase membrane subunit f); INTERACTS WITH 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP synthase subunit f, mitochondrial; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2; Atp5j2; LOC690441; similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2129,421,665 - 9,428,236 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl129,421,579 - 9,428,236 (+)Ensembl
Rnor_6.01211,191,799 - 11,198,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,191,812 - 11,198,369 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,260,901 - 13,267,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,735,171 - 9,741,496 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1211,226,797 - 11,233,350 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1 motor shielded by F(0), Functional significance, and evidence for an involvement of the unique F(0) subunit F(6). Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
3. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12110673   PMID:12865426   PMID:14651853   PMID:15057822   PMID:18614015   PMID:21630459   PMID:23376485   PMID:29476059  


Genomics

Comparative Map Data
Atp5mf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2129,421,665 - 9,428,236 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl129,421,579 - 9,428,236 (+)Ensembl
Rnor_6.01211,191,799 - 11,198,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,191,812 - 11,198,369 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,260,901 - 13,267,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,735,171 - 9,741,496 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1211,226,797 - 11,233,350 (+)NCBICelera
Cytogenetic Map12p11NCBI
ATP5MF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,458,195 - 99,466,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl799,448,475 - 99,466,186 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,055,818 - 99,063,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,893,720 - 98,901,744 (-)NCBINCBI36hg18NCBI36
Build 34798,700,435 - 98,708,459NCBI
Celera793,789,985 - 93,798,009 (-)NCBI
Cytogenetic Map7q22.1NCBI
HuRef793,692,453 - 93,700,497 (-)NCBIHuRef
CHM1_1798,985,884 - 98,993,924 (-)NCBICHM1_1
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBI
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)NCBI
Atp5j2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,120,514 - 145,128,351 (-)NCBIGRCm39mm39
GRCm39 Ensembl5145,120,508 - 145,128,872 (-)Ensembl
GRCm385145,183,704 - 145,191,541 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,183,698 - 145,192,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv375145,944,575 - 145,952,461 (-)NCBIGRCm37mm9NCBIm37
MGSCv365145,437,233 - 145,445,119 (-)NCBImm8
Celera5142,175,946 - 142,183,828 (-)NCBICelera
Cytogenetic Map5G2NCBI
Atp5mf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,129,651 - 15,136,722 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,129,651 - 15,136,722 (-)NCBIChiLan1.0ChiLan1.0
ATP5MF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17104,933,594 - 104,941,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,933,594 - 104,941,921 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0791,431,277 - 91,439,423 (-)NCBIMhudiblu_PPA_v0panPan3
LOC102151856
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,438,852 - 49,439,253 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1549,782,482 - 49,782,881 (-)NCBI
ROS_Cfam_1.01550,115,350 - 50,115,749 (-)NCBI
ROS_Cfam_1.0 Ensembl610,129,341 - 10,136,537 (+)Ensembl
Atp5mf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,219,493 - 138,228,508 (+)NCBI
SpeTri2.0NW_0049367501,716,752 - 1,725,700 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.136,389,338 - 6,396,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,655,564 - 6,667,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,699,537 - 13,707,421 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660702,596,972 - 2,604,989 (-)NCBIVero_WHO_p1.0
Atp5mf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,878,119 - 32,885,814 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474032,878,119 - 32,885,907 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH128919  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01865,494,243 - 65,494,591NCBIRnor5.0
Rnor_5.01233,185,162 - 33,185,382NCBIRnor5.0
RGSC_v3.41867,805,468 - 67,805,815UniSTSRGSC3.4
RGSC_v3.41228,667,319 - 28,667,538UniSTSRGSC3.4
Celera1862,721,743 - 62,722,089UniSTS
Celera1229,308,276 - 29,308,495UniSTS
RH 3.4 Map10877.0UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map12p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000033537
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3
Medium 3 40 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000033537   ⟹   ENSRNOP00000029426
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,424,874 - 9,428,236 (+)Ensembl
Rnor_6.0 Ensembl1211,191,812 - 11,198,369 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104742   ⟹   ENSRNOP00000078995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,421,579 - 9,428,236 (+)Ensembl
RefSeq Acc Id: NM_001271117   ⟹   NP_001258046
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2129,421,665 - 9,428,236 (+)NCBI
Rnor_6.01211,191,799 - 11,198,369 (+)NCBI
Rnor_5.01213,260,901 - 13,267,471 (+)NCBI
Celera1211,226,797 - 11,233,350 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001258046 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZAF6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001258046   ⟸   NM_001271117
- UniProtKB: D3ZAF6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029426   ⟸   ENSRNOT00000033537
RefSeq Acc Id: ENSRNOP00000078995   ⟸   ENSRNOT00000104742

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAF6-F1-model_v2 AlphaFold D3ZAF6 1-88 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698413
Promoter ID:EPDNEW_R8938
Type:multiple initiation site
Name:Atp5mf_1
Description:ATP synthase membrane subunit f
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01211,191,818 - 11,191,878EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596067 AgrOrtholog
BioCyc Gene G2FUF-20060 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000027049 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000078995.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104742.1 UniProtKB/TrEMBL
InterPro F1F0-ATPsyn_F_prd UniProtKB/Swiss-Prot
KEGG Report rno:690441 UniProtKB/Swiss-Prot
NCBI Gene 690441 ENTREZGENE
PANTHER PTHR13080 UniProtKB/Swiss-Prot
Pfam WRW UniProtKB/Swiss-Prot
PhenoGen Atp5mf PhenoGen
UniProt A0A8I5ZLZ0_RAT UniProtKB/TrEMBL
  ATPK_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-01 Atp5mf  ATP synthase membrane subunit f  Atp5j2  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Atp5j2  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2  LOC684567  similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2  Data Merged 1643240 APPROVED
2011-12-01 Atp5j2  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2  Atp5j2  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-12-01 LOC684567   similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2  LOC684567  similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Atp5j2  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2  LOC690441  similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690441  similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684567  similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL