Ndufb4-ps9 (NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ndufb4-ps9 (NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9) Rattus norvegicus
Analyze
Symbol: Ndufb4-ps9
Name: NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9
RGD ID: 1595984
Description: Predicted to be located in mitochondrial inner membrane.
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC691736; similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa
Related Functional Gene: Ndufb4  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82033,286,569 - 33,287,030 (+)NCBIGRCr8
mRatBN7.22032,743,900 - 32,744,361 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx2033,764,416 - 33,764,877 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02033,155,127 - 33,155,588 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02033,882,045 - 33,882,506 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02034,747,513 - 34,747,956 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02036,504,581 - 36,505,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42032,114,354 - 32,114,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2034,122,525 - 34,122,968 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Variants

.
Variants in Ndufb4-ps9
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression


Sequence


RefSeq Acc Id: XR_086151
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,743,900 - 32,745,121 (+)NCBI
Rnor_6.02034,747,513 - 34,747,956 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000085097.1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3627 BioCyc
Ensembl Genes ENSRNOG00000066018 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000100567.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_NDUFB4_su UniProtKB/TrEMBL
NCBI Gene 691736 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  NADH-UBIQUINONE OXIDOREDUCTASE B15 SUBUNIT UniProtKB/TrEMBL
Pfam NDUF_B4 UniProtKB/TrEMBL
PhenoGen Ndufb4-ps9 PhenoGen
RatGTEx ENSRNOG00000066018 RatGTEx
UniProt A0A8I6A0Y5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ndufb4-ps9  NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9  LOC691736  similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC691736  similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa      Symbol and Name status set to provisional 70820 PROVISIONAL