Acyp2 (acylphosphatase 2) - Rat Genome Database

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Gene: Acyp2 (acylphosphatase 2) Rattus norvegicus
Analyze
Symbol: Acyp2
Name: acylphosphatase 2
RGD ID: 1595836
Description: Predicted to enable acylphosphatase activity and identical protein binding activity. Orthologous to human ACYP2 (acylphosphatase 2); PARTICIPATES IN pyruvate metabolic pathway; INTERACTS WITH 6-propyl-2-thiouracil; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: acylphosphatase 2, muscle type; acylphosphatase, muscle type isozyme; acylphosphatase-2; acylphosphatase-2-like; acylphosphate phosphohydrolase 2; LOC100361559; LOC364224; LOC682245; similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214104,201,894 - 104,371,415 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl14114,891,246 - 115,052,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.014114,891,245 - 115,052,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014114,552,148 - 114,712,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414111,507,725 - 111,512,680 (+)NCBIRGSC3.4rn4RGSC3.4
Celera14103,066,537 - 103,235,056 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1647162   PMID:8889548   PMID:12374855   PMID:16084386   PMID:18614015  


Genomics

Comparative Map Data
Acyp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214104,201,894 - 104,371,415 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl14114,891,246 - 115,052,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.014114,891,245 - 115,052,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014114,552,148 - 114,712,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414111,507,725 - 111,512,680 (+)NCBIRGSC3.4rn4RGSC3.4
Celera14103,066,537 - 103,235,056 (-)NCBICelera
Cytogenetic Map14q22NCBI
ACYP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl253,970,838 - 54,305,300 (+)EnsemblGRCh38hg38GRCh38
GRCh38253,971,113 - 54,305,300 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37254,198,250 - 54,532,437 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36254,195,914 - 54,385,941 (+)NCBINCBI36hg18NCBI36
Build 34254,254,060 - 54,443,931NCBI
Celera254,183,282 - 54,373,292 (+)NCBI
Cytogenetic Map2p16.2NCBI
HuRef254,077,147 - 54,267,126 (+)NCBIHuRef
CHM1_1254,274,220 - 54,464,574 (+)NCBICHM1_1
Acyp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,455,992 - 30,599,778 (-)NCBIGRCm39mm39
GRCm39 Ensembl1130,455,991 - 30,599,587 (-)Ensembl
GRCm381130,505,992 - 30,649,608 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,505,991 - 30,649,587 (-)EnsemblGRCm38mm10GRCm38
MGSCv371130,405,992 - 30,549,396 (-)NCBIGRCm37mm9NCBIm37
MGSCv361130,405,992 - 30,549,396 (-)NCBImm8
MGSCv361130,471,086 - 30,615,251 (-)NCBImm8
Celera1132,993,107 - 33,048,388 (-)NCBICelera
Cytogenetic Map11A4NCBI
Acyp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541532,510,613 - 32,511,105 (+)NCBIChiLan1.0ChiLan1.0
ACYP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A55,025,169 - 55,603,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A55,027,521 - 55,603,055 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A54,261,519 - 54,457,551 (+)NCBIMhudiblu_PPA_v0panPan3
ACYP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11054,978,903 - 55,227,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1055,082,491 - 55,226,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1054,930,513 - 55,178,852 (+)NCBI
ROS_Cfam_1.01055,977,977 - 56,226,126 (+)NCBI
UMICH_Zoey_3.11055,670,146 - 55,918,124 (+)NCBI
UNSW_CanFamBas_1.01055,956,987 - 56,205,775 (+)NCBI
UU_Cfam_GSD_1.01056,243,731 - 56,498,250 (+)NCBI
Acyp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629227,800,651 - 27,955,767 (-)NCBI
SpeTri2.0NW_004936491615,515 - 770,636 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACYP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1386,945,635 - 87,231,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2391,728,767 - 91,892,606 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACYP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11452,642,008 - 52,846,243 (-)NCBI
Vero_WHO_p1.0NW_02366604558,875,794 - 59,097,600 (+)NCBI
Acyp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248337,603,041 - 7,685,340 (-)NCBI

Position Markers
D14Got164  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.414111,634,560 - 111,634,762UniSTSRGSC3.4
Celera14103,122,608 - 103,122,810UniSTS
Cytogenetic Map14q22UniSTS
RH127902  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.214104,201,983 - 104,202,175 (+)MAPPERmRatBN7.2
Rnor_6.014114,891,335 - 114,891,526NCBIRnor6.0
Rnor_5.014114,552,238 - 114,552,429UniSTSRnor5.0
RGSC_v3.414111,512,399 - 111,512,590UniSTSRGSC3.4
Celera14103,066,627 - 103,066,818UniSTS
Cytogenetic Map14q22UniSTS
RH125666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2872,155,848 - 72,156,075 (+)MAPPERmRatBN7.2
mRatBN7.214104,203,898 - 104,204,120 (+)MAPPERmRatBN7.2
Rnor_6.014114,893,250 - 114,893,472NCBIRnor6.0
Rnor_6.0878,009,048 - 78,009,274NCBIRnor6.0
Rnor_5.014114,554,153 - 114,554,375UniSTSRnor5.0
Rnor_5.0875,066,832 - 75,067,058UniSTSRnor5.0
RGSC_v3.4875,971,020 - 75,971,246UniSTSRGSC3.4
RGSC_v3.414111,510,453 - 111,510,675UniSTSRGSC3.4
Celera14103,068,541 - 103,068,763UniSTS
Celera869,579,470 - 69,579,696UniSTS
Cytogenetic Map14q22UniSTS
Cytogenetic Map8q24UniSTS
fd02b11.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera14103,188,488 - 103,189,031UniSTS
Celera14103,188,466 - 103,189,031UniSTS
Cytogenetic Map14q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1480049285115493446Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1480049285115493446Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:54
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000067998
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 33 8 11 39 5 6 2 8
Low 3 10 57 41 19 41 35 30 35 9
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067998   ⟹   ENSRNOP00000061028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl14114,891,246 - 115,052,450 (-)Ensembl
RefSeq Acc Id: NM_001169145   ⟹   NP_001162616
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214104,201,894 - 104,371,386 (-)NCBI
Rnor_6.014114,891,245 - 115,052,450 (-)NCBI
Rnor_5.014114,552,148 - 114,712,843 (-)NCBI
RGSC_v3.414111,507,725 - 111,512,680 (+)RGD
Celera14103,066,537 - 103,235,056 (-)RGD
Sequence:
RefSeq Acc Id: XM_017599325   ⟹   XP_017454814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214104,201,894 - 104,371,415 (-)NCBI
Rnor_6.014114,891,245 - 115,052,497 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092253   ⟹   XP_038948181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.214104,201,894 - 104,371,179 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001162616 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948181 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98045 (Get FASTA)   NCBI Sequence Viewer  
  P35745 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001162616   ⟸   NM_001169145
- UniProtKB: D4A1G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454814   ⟸   XM_017599325
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000061028   ⟸   ENSRNOT00000067998
RefSeq Acc Id: XP_038948181   ⟸   XM_039092253
- Peptide Label: isoform X2
Protein Domains
Acylphosphatase-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595836 AgrOrtholog
Ensembl Genes ENSRNOG00000042419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061028 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067998 ENTREZGENE, UniProtKB/TrEMBL
InterPro Acylphosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acylphosphatase-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acylphosphatase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acylphosphatase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:364224 UniProtKB/TrEMBL
NCBI Gene 364224 ENTREZGENE
PANTHER PTHR10029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Acylphosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acyp2 PhenoGen
PRINTS ACYLPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACYLPHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLPHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLPHOSPHATASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54975 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ACYP2_RAT UniProtKB/Swiss-Prot
  D4A1G1 ENTREZGENE, UniProtKB/TrEMBL
  P35745 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Acyp2  acylphosphatase 2  Acyp2  acylphosphatase 2, muscle type  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Acyp2  acylphosphatase 2, muscle type  LOC100361559  acylphosphatase-2-like  Data Merged 737654 PROVISIONAL
2010-05-05 LOC100361559  acylphosphatase-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-12-16 LOC364224  similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)  LOC682245  similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)  Data Merged 737654 APPROVED
2009-12-16 Acyp2  acylphosphatase 2, muscle type  LOC364224  similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC364224  similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682245  similar to Acylphosphatase, muscle type isozyme (Acylphosphate phosphohydrolase)      Symbol and Name status set to provisional 70820 PROVISIONAL