Pla2g4cl1 (phospholipase A2, group IVC-like 1) - Rat Genome Database

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Gene: Pla2g4cl1 (phospholipase A2, group IVC-like 1) Rattus norvegicus
Analyze
Symbol: Pla2g4cl1
Name: phospholipase A2, group IVC-like 1
RGD ID: 1594655
Description: INTERACTS WITH 1-naphthyl isothiocyanate; glycidol; tetrachloromethane
Type: protein-coding
Previously known as: cytosolic phospholipase A2 gamma-like; LOC691813; phospholipase A2, group IVC; Pla2g4c; similar to phospholipase A2, group IVC (cytosolic, calcium-independent)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0175,591,860 - 75,620,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0176,895,908 - 76,924,920 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4173,874,474 - 73,943,096 (+)NCBIRGSC3.4rn4RGSC3.4
Celera169,676,588 - 69,705,844 (+)NCBICelera
Cytogenetic Map1q21NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Position Markers
UniSTS:226084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2174,298,663 - 74,298,801 (+)MAPPERmRatBN7.2
mRatBN7.21495,307,732 - 95,307,870 (-)MAPPERmRatBN7.2
mRatBN7.21495,307,732 - 95,307,870 (+)MAPPERmRatBN7.2
mRatBN7.2174,298,663 - 74,298,801 (-)MAPPERmRatBN7.2
Rnor_6.0175,643,964 - 75,644,101NCBIRnor6.0
Rnor_6.014106,061,135 - 106,061,272NCBIRnor6.0
Rnor_5.0176,947,978 - 76,948,115UniSTSRnor5.0
Rnor_5.014106,127,765 - 106,127,902UniSTSRnor5.0
RGSC_v3.4173,925,391 - 73,925,528UniSTSRGSC3.4
RGSC_v3.414101,923,722 - 101,923,859UniSTSRGSC3.4
Celera1494,321,030 - 94,321,167UniSTS
Celera169,728,745 - 69,728,882UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map14q22UniSTS
RH141447  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,308,909 - 95,309,097 (+)MAPPERmRatBN7.2
mRatBN7.2174,297,493 - 74,297,682 (-)MAPPERmRatBN7.2
mRatBN7.2174,297,493 - 74,297,682 (+)MAPPERmRatBN7.2
Rnor_6.0175,642,794 - 75,642,982NCBIRnor6.0
Rnor_6.014106,062,310 - 106,062,497NCBIRnor6.0
Rnor_5.014106,128,940 - 106,129,127UniSTSRnor5.0
Rnor_5.0176,946,808 - 76,946,996UniSTSRnor5.0
RGSC_v3.4173,924,221 - 73,924,409UniSTSRGSC3.4
RGSC_v3.414101,924,898 - 101,925,085UniSTSRGSC3.4
Celera1494,322,206 - 94,322,393UniSTS
Celera169,727,575 - 69,727,763UniSTS
RH 3.4 Map14779.79UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map14q22UniSTS
PELI1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,308,907 - 95,309,072 (+)MAPPERmRatBN7.2
mRatBN7.2174,297,519 - 74,297,684 (-)MAPPERmRatBN7.2
mRatBN7.21495,308,907 - 95,309,072 (-)MAPPERmRatBN7.2
mRatBN7.2174,297,519 - 74,297,684 (+)MAPPERmRatBN7.2
Rnor_6.014106,062,308 - 106,062,472NCBIRnor6.0
Rnor_6.0175,642,820 - 75,642,984NCBIRnor6.0
Rnor_5.014106,128,938 - 106,129,102UniSTSRnor5.0
Rnor_5.0176,946,834 - 76,946,998UniSTSRnor5.0
RGSC_v3.4173,924,247 - 73,924,411UniSTSRGSC3.4
RGSC_v3.414101,924,896 - 101,925,060UniSTSRGSC3.4
Celera1494,322,204 - 94,322,368UniSTS
Celera169,727,601 - 69,727,765UniSTS
Cytogenetic Map1q21UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:28
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000033633, ENSRNOT00000058334
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_006223084   ⟹   XP_006223146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera169,676,588 - 69,705,844 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228335   ⟹   XP_006228397
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0175,591,860 - 75,620,904 (+)NCBI
Rnor_5.0176,895,908 - 76,924,920 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759024   ⟹   XP_008757246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0175,591,860 - 75,620,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008774427   ⟹   XP_008772649
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera169,676,588 - 69,705,844 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594655 AgrOrtholog
NCBI Gene 691813 ENTREZGENE
PhenoGen Pla2g4cl1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-27 Pla2g4cl1  phospholipase A2, group IVC-like 1  Pla2g4c  phospholipase A2, group IVC  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-19 Pla2g4c  phospholipase A2, group IVC  LOC691813  similar to phospholipase A2, group IVC (cytosolic, calcium-independent)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC691813  similar to phospholipase A2, group IVC (cytosolic, calcium-independent)      Symbol and Name status set to provisional 70820 PROVISIONAL