Arpp21 (cAMP regulated phosphoprotein 21) - Rat Genome Database
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Gene: Arpp21 (cAMP regulated phosphoprotein 21) Rattus norvegicus
Analyze
Symbol: Arpp21
Name: cAMP regulated phosphoprotein 21
RGD ID: 1593239
Description: Predicted to have nucleic acid binding activity. Predicted to be involved in cellular response to heat. Predicted to localize to cytoplasm. Orthologous to human ARPP21 (cAMP regulated phosphoprotein 21); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Arpp-21; cAMP-regulated phosphoprotein (21 kDa); cAMP-regulated phosphoprotein 21; cyclic AMP-regulated phosphoprotein; cyclic AMP-regulated phosphoprotein 21; cyclic AMP-regulated phosphoprotein, 21; LOC102553309; LOC360675; LOC363153; MGC109368; Ppp1r1c; Ppp1r1cl; protein phosphatase 1, regulatory (inhibitory subunit 1C); protein phosphatase 1, regulatory subunit 1C; protein phosphatase 1, regulatory subunit 1C-like; RGD1307208; RGD1307215; similar to B930044J06 protein ; similar to cyclic AMP-regulated phosphoprotein, 21 isoform 2; uncharacterized LOC102553309
Orthologs:
Homo sapiens (human) : ARPP21 (cAMP regulated phosphoprotein 21)  HGNC  Alliance
Mus musculus (house mouse) : Arpp21 (cyclic AMP-regulated phosphoprotein, 21)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Arpp21 (cAMP regulated phosphoprotein 21)
Pan paniscus (bonobo/pygmy chimpanzee) : ARPP21 (cAMP regulated phosphoprotein 21)
Canis lupus familiaris (dog) : ARPP21 (cAMP regulated phosphoprotein 21)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Arpp21 (cAMP regulated phosphoprotein 21)
Sus scrofa (pig) : ARPP21 (cAMP regulated phosphoprotein 21)
Chlorocebus sabaeus (African green monkey) : ARPP21 (cAMP regulated phosphoprotein 21)
Heterocephalus glaber (naked mole-rat) : Arpp21 (cAMP regulated phosphoprotein 21)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08120,323,895 - 120,492,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8120,323,897 - 120,446,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08119,663,712 - 119,832,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48116,674,803 - 116,794,799 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18116,809,093 - 116,814,254 (-)NCBI
Celera8111,310,307 - 111,428,734 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:1940913   PMID:2540203   PMID:12477932   PMID:15632090   PMID:16875859   PMID:18755693   PMID:19103603   PMID:29581509  


Genomics

Comparative Map Data
Arpp21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08120,323,895 - 120,492,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8120,323,897 - 120,446,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08119,663,712 - 119,832,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48116,674,803 - 116,794,799 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18116,809,093 - 116,814,254 (-)NCBI
Celera8111,310,307 - 111,428,734 (-)NCBICelera
Cytogenetic Map8q32NCBI
ARPP21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl335,638,945 - 35,794,496 (+)EnsemblGRCh38hg38GRCh38
GRCh38335,638,853 - 35,798,933 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37335,680,666 - 35,835,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36335,658,853 - 35,810,992 (+)NCBINCBI36hg18NCBI36
Celera335,625,833 - 35,777,956 (+)NCBI
Cytogenetic Map3p22.3NCBI
HuRef335,621,751 - 35,777,104 (+)NCBIHuRef
CHM1_1335,630,728 - 35,786,025 (+)NCBICHM1_1
Arpp21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399111,894,159 - 112,065,356 (-)NCBI
GRCm389112,065,091 - 112,236,288 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9112,065,091 - 112,235,938 (-)EnsemblGRCm38mm10GRCm38
MGSCv379111,967,595 - 112,137,345 (-)NCBIGRCm37mm9NCBIm37
MGSCv369111,910,149 - 112,032,806 (-)NCBImm8
Celera9111,791,461 - 111,962,061 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map962.46NCBI
Arpp21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554212,682,413 - 2,839,245 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554212,681,759 - 2,838,014 (+)NCBIChiLan1.0ChiLan1.0
ARPP21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1335,851,537 - 36,008,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl335,852,051 - 36,008,061 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0335,558,119 - 35,715,157 (+)NCBIMhudiblu_PPA_v0panPan3
ARPP21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl235,722,727 - 5,876,487 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1235,722,575 - 5,876,923 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Arpp21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647325,475,845 - 25,625,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPP21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1320,934,871 - 21,088,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11320,955,414 - 21,088,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21322,754,689 - 22,908,209 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARPP21
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1580,089,657 - 80,204,314 (+)Ensembl
ChlSab1.11580,048,078 - 80,204,843 (+)NCBI
Arpp21
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478813,613,751 - 13,766,633 (+)NCBI

Position Markers
D8Rat201  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.08120,381,225 - 120,381,461NCBIRnor6.0
Rnor_5.08119,720,465 - 119,720,701UniSTSRnor5.0
RGSC_v3.48116,729,517 - 116,729,753UniSTSRGSC3.4
RGSC_v3.48116,729,516 - 116,729,753RGDRGSC3.4
RGSC_v3.18116,748,972 - 116,749,208RGD
Celera8111,363,817 - 111,364,053UniSTS
Cytogenetic Map8q32UniSTS
RH 3.4 Map81192.1UniSTS
RH 3.4 Map81192.1RGD
RH 2.0 Map8948.6RGD
SHRSP x BN Map871.8999RGD
D9Bwg1012e  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.08120,323,906 - 120,324,154NCBIRnor6.0
Rnor_5.08119,663,723 - 119,663,971UniSTSRnor5.0
RGSC_v3.48116,674,808 - 116,675,056UniSTSRGSC3.4
Celera8111,310,312 - 111,310,560UniSTS
Cytogenetic Map8q32UniSTS
BE121039  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.08120,441,268 - 120,441,469NCBIRnor6.0
Rnor_5.08119,780,508 - 119,780,709UniSTSRnor5.0
RGSC_v3.48116,789,560 - 116,789,761UniSTSRGSC3.4
Celera8111,423,495 - 111,423,696UniSTS
Cytogenetic Map8q32UniSTS
RH 3.4 Map81192.99UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)850529480128036471Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)865717449128033050Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight as a percentage of body weight (CMO:0000654)874917593121080545Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)876103982127182642Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)878805083123805083Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)878805083123805083Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)878805083123805083Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)878805083123805083Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)880697934125697934Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)883894304128894304Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)889058229132243842Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)895963141122354314Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8100873811133307652Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102051964133307652Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8104682575133307652Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)8104682575133307652Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8107769005129956433Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:628
Count of miRNA genes:268
Interacting mature miRNAs:340
Transcripts:ENSRNOT00000037199, ENSRNOT00000042854
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 2 3 58 2
Low 2 10 21 13 11 13 6 8 10 19 22 11 6
Below cutoff 1 33 27 27 27 6 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07071529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07071530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01057161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S65091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000037199   ⟹   ENSRNOP00000033306
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8120,439,994 - 120,446,507 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042854   ⟹   ENSRNOP00000039268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8120,323,901 - 120,446,507 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085161   ⟹   ENSRNOP00000069661
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8120,323,897 - 120,446,455 (-)Ensembl
RefSeq Acc Id: NM_001135045   ⟹   NP_001128517
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,901 - 120,446,507 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
RGSC_v3.48116,674,803 - 116,794,799 (-)RGD
Celera8111,310,307 - 111,428,734 (-)RGD
Sequence:
RefSeq Acc Id: NM_001135046   ⟹   NP_001128518
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,439,972 - 120,446,507 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
RGSC_v3.48116,674,803 - 116,794,799 (-)RGD
Celera8111,422,199 - 111,428,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243972   ⟹   XP_006244034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243973   ⟹   XP_006244035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243974   ⟹   XP_006244036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,491,830 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243975   ⟹   XP_006244037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,492,790 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243976   ⟹   XP_006244038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243977   ⟹   XP_006244039
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,451,040 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243980   ⟹   XP_006244042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,491,184 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243982   ⟹   XP_006244044
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,445,283 (-)NCBI
Rnor_5.08119,663,712 - 119,832,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766634   ⟹   XP_008764856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,478,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766635   ⟹   XP_008764857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,478,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595750   ⟹   XP_017451239
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,490,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595751   ⟹   XP_017451240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,489,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595752   ⟹   XP_017451241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595753   ⟹   XP_017451242
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595754   ⟹   XP_017451243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595755   ⟹   XP_017451244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595756   ⟹   XP_017451245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595757   ⟹   XP_017451246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595758   ⟹   XP_017451247
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595759   ⟹   XP_017451248
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595760   ⟹   XP_017451249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,323,895 - 120,446,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595761   ⟹   XP_017451250
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,333,467 - 120,446,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595762   ⟹   XP_017451251
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,386,476 - 120,446,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595763   ⟹   XP_017451252
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,402,956 - 120,446,760 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595764   ⟹   XP_017451253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,402,956 - 120,446,760 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595765   ⟹   XP_017451254
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,402,956 - 120,446,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595766   ⟹   XP_017451255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,408,844 - 120,446,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595767   ⟹   XP_017451256
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,415,326 - 120,446,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595768   ⟹   XP_017451257
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,415,386 - 120,446,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595769   ⟹   XP_017451258
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08120,439,975 - 120,446,752 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001128517 (Get FASTA)   NCBI Sequence Viewer  
  NP_001128518 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244034 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244035 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244036 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244037 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244038 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244042 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244044 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764856 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451239 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451240 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451241 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451242 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451243 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451244 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451245 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451246 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451247 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451248 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451249 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451250 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451251 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451252 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451253 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451254 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451255 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451256 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451257 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451258 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89974 (Get FASTA)   NCBI Sequence Viewer  
  EDL77017 (Get FASTA)   NCBI Sequence Viewer  
  EDL77018 (Get FASTA)   NCBI Sequence Viewer  
  EDL77019 (Get FASTA)   NCBI Sequence Viewer  
  EDL77020 (Get FASTA)   NCBI Sequence Viewer  
  EDL77021 (Get FASTA)   NCBI Sequence Viewer  
  EDL77022 (Get FASTA)   NCBI Sequence Viewer  
  EDL77023 (Get FASTA)   NCBI Sequence Viewer  
  EDL77024 (Get FASTA)   NCBI Sequence Viewer  
  EDL77025 (Get FASTA)   NCBI Sequence Viewer  
  EDL77026 (Get FASTA)   NCBI Sequence Viewer  
  EDL77027 (Get FASTA)   NCBI Sequence Viewer  
  EDL77028 (Get FASTA)   NCBI Sequence Viewer  
  EDL77029 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001128517   ⟸   NM_001135045
- Peptide Label: isoform 2
- UniProtKB: D3ZQR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128518   ⟸   NM_001135046
- Peptide Label: isoform 1
- UniProtKB: Q5FVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244037   ⟸   XM_006243975
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244036   ⟸   XM_006243974
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244042   ⟸   XM_006243980
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244039   ⟸   XM_006243977
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244038   ⟸   XM_006243976
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244035   ⟸   XM_006243973
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244034   ⟸   XM_006243972
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006244044   ⟸   XM_006243982
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008764857   ⟸   XM_008766635
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008764856   ⟸   XM_008766634
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451239   ⟸   XM_017595750
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451240   ⟸   XM_017595751
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451247   ⟸   XM_017595758
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017451245   ⟸   XM_017595756
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017451243   ⟸   XM_017595754
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017451248   ⟸   XM_017595759
- Peptide Label: isoform X9
- UniProtKB: D3ZQR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451241   ⟸   XM_017595752
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JVX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451244   ⟸   XM_017595755
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451242   ⟸   XM_017595753
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017451246   ⟸   XM_017595757
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017451249   ⟸   XM_017595760
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017451250   ⟸   XM_017595761
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017451251   ⟸   XM_017595762
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017451253   ⟸   XM_017595764
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017451252   ⟸   XM_017595763
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017451254   ⟸   XM_017595765
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017451255   ⟸   XM_017595766
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017451256   ⟸   XM_017595767
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017451257   ⟸   XM_017595768
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017451258   ⟸   XM_017595769
- Peptide Label: isoform X17
- UniProtKB: Q5FVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069661   ⟸   ENSRNOT00000085161
RefSeq Acc Id: ENSRNOP00000039268   ⟸   ENSRNOT00000042854
RefSeq Acc Id: ENSRNOP00000033306   ⟸   ENSRNOT00000037199
Protein Domains
R3H   SUZ

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 120325963 120325964 T G snv SR/JrHsd (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593239 AgrOrtholog
Ensembl Genes ENSRNOG00000008919 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000033306 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000039268 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069661 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037199 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000042854 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085161 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.50 UniProtKB/TrEMBL
InterPro R3H_dom_sf UniProtKB/TrEMBL
  R3H_ss-bd UniProtKB/TrEMBL
  SUZ UniProtKB/TrEMBL
KEGG Report rno:363153 UniProtKB/TrEMBL
NCBI Gene 363153 ENTREZGENE
Pfam R3H UniProtKB/TrEMBL
  SUZ UniProtKB/TrEMBL
PhenoGen Arpp21 PhenoGen
PROSITE R3H UniProtKB/TrEMBL
  SUZ UniProtKB/TrEMBL
SMART R3H UniProtKB/TrEMBL
Superfamily-SCOP SSF82708 UniProtKB/TrEMBL
UniGene Rn.7511 ENTREZGENE
UniProt A0A0G2JVX9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQR3 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Arpp21  cAMP regulated phosphoprotein 21  Arpp21  cAMP-regulated phosphoprotein 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Arpp21  cAMP-regulated phosphoprotein 21  LOC102553309  uncharacterized LOC102553309  Data Merged 737654 PROVISIONAL
2013-12-17 LOC102553309  uncharacterized LOC102553309      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Arpp21  cAMP-regulated phosphoprotein 21  RGD1307215  similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed  Data Merged 1643240 APPROVED
2011-01-20 Arpp21  cAMP-regulated phosphoprotein 21  Arpp-21  cyclic AMP-regulated phosphoprotein 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 Arpp-21  cyclic AMP-regulated phosphoprotein  RGD1307208  similar to B930044J06 protein   Data Merged 737654 PROVISIONAL
2008-09-25 Arpp-21  cyclic AMP-regulated phosphoprotein  Arpp21  cyclic AMP-regulated phosphoprotein, 21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Arpp21  cyclic AMP-regulated phosphoprotein, 21  Ppp1r1cl  protein phosphatase 1, regulatory subunit 1C-like  Data Merged 737654 APPROVED
2008-04-30 RGD1307208  similar to B930044J06 protein   RGD1307208_predicted  similar to B930044J06 protein (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-18 Ppp1r1cl  protein phosphatase 1, regulatory subunit 1C-like  Ppp1r1c  protein phosphatase 1, regulatory subunit 1C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Arpp21  cyclic AMP-regulated phosphoprotein, 21  LOC363153  similar to cyclic AMP-regulated phosphoprotein, 21 isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC363153  similar to cyclic AMP-regulated phosphoprotein, 21 isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 RGD1307215  similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed  RGD1307215_predicted  similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307208_predicted  similar to B930044J06 protein (predicted)  LOC360675_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-20 RGD1307215_predicted  similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed (predicted)  LOC363154_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360675_predicted  similar to B930044J06 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 LOC363154_predicted  similar to protein phosphatase 1, regulatory (inhibitory) subunit 1C; thymocyte ARPP; DNA segment, Chr 9, Brigham & Womens Genetics 1012 expressed (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2003-04-09 Ppp1r1c  protein phosphatase 1, regulatory subunit 1C    protein phosphatase 1, regulatory (inhibitory subunit 1C)  Name updated 629478 APPROVED
2001-10-23 Ppp1r1c  protein phosphatase 1, regulatory (inhibitory subunit 1C)      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED