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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | pneumoconiosis | | ISO | RGD:1353942 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35506645 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | pneumoconiosis | | ISO | RGD:1353942 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35506645 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Lrrc29 (Rattus norvegicus - Norway rat) |
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FBXL9P (Homo sapiens - human) |
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Fbxl9 (Mus musculus - house mouse) |
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Lrrc29 (Chinchilla lanigera - long-tailed chinchilla) |
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LOC100987305 (Pan paniscus - bonobo/pygmy chimpanzee) |
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Lrrc29 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LRRC29 (Sus scrofa - pig) |
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LRRC29 (Chlorocebus sabaeus - green monkey) |
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Lrrc29 (Heterocephalus glaber - naked mole-rat) |
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Variants in Lrrc29
37 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH131578 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 5 | 7 | 10 | ||||||||||
Low | 3 | 35 | 52 | 41 | 12 | 41 | 8 | 8 | 70 | 35 | 31 | 11 | 8 |
Below cutoff | 8 | 3 | 4 |
RefSeq Acc Id: | ENSRNOT00000059663 ⟹ ENSRNOP00000056415 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107070 ⟹ ENSRNOP00000084261 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000111096 ⟹ ENSRNOP00000096935 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000115175 ⟹ ENSRNOP00000093245 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001195616 ⟹ NP_001182545 | ||||||||||||||||||||
RefSeq Status: | |||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006255531 ⟹ XP_006255593 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006255533 ⟹ XP_006255595 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039097947 ⟹ XP_038953875 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039097948 ⟹ XP_038953876 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039097949 ⟹ XP_038953877 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039097950 ⟹ XP_038953878 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039097951 ⟹ XP_038953879 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NP_001182545 ⟸ NM_001195616 |
- Sequence: |
RefSeq Acc Id: | XP_006255595 ⟸ XM_006255533 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | XP_006255593 ⟸ XM_006255531 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000056415 ⟸ ENSRNOT00000059663 |
RefSeq Acc Id: | XP_038953879 ⟸ XM_039097951 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_038953877 ⟸ XM_039097949 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038953878 ⟸ XM_039097950 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038953876 ⟸ XM_039097948 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_038953875 ⟸ XM_039097947 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | ENSRNOP00000084261 ⟸ ENSRNOT00000107070 |
RefSeq Acc Id: | ENSRNOP00000096935 ⟸ ENSRNOT00000111096 |
RefSeq Acc Id: | ENSRNOP00000093245 ⟸ ENSRNOT00000115175 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-B2RYK7-F1-model_v2 | AlphaFold | B2RYK7 | 1-286 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701072 | ||||||||
Promoter ID: | EPDNEW_R11595 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Lrrc29_1 | ||||||||
Description: | leucine rich repeat containing 29 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1593150 | AgrOrtholog |
BioCyc Gene | G2FUF-5843 | BioCyc |
Ensembl Genes | ENSRNOG00000025231 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000056415 | ENTREZGENE |
ENSRNOP00000056415.3 | UniProtKB/TrEMBL | |
ENSRNOP00000084261.1 | UniProtKB/TrEMBL | |
ENSRNOP00000093245.1 | UniProtKB/TrEMBL | |
ENSRNOP00000096935.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000059663 | ENTREZGENE |
ENSRNOT00000059663.3 | UniProtKB/TrEMBL | |
ENSRNOT00000107070.1 | UniProtKB/TrEMBL | |
ENSRNOT00000111096.1 | UniProtKB/TrEMBL | |
ENSRNOT00000115175.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.1280.50 | UniProtKB/TrEMBL |
3.80.10.10 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7454853 | IMAGE-MGC_LOAD |
InterPro | F-box-like_dom_sf | UniProtKB/TrEMBL |
F-box_dom | UniProtKB/TrEMBL | |
L_dom-like | UniProtKB/TrEMBL | |
Leu-rich_rpt | UniProtKB/TrEMBL | |
Leu-rich_rpt_Cys-con_subtyp | UniProtKB/TrEMBL | |
KEGG Report | rno:502201 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:188635 | IMAGE-MGC_LOAD |
NCBI Gene | 502201 | ENTREZGENE |
PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 | UniProtKB/TrEMBL |
UNCHARACTERIZED | UniProtKB/TrEMBL | |
Pfam | F-box-like | UniProtKB/TrEMBL |
LRR_6 | UniProtKB/TrEMBL | |
PhenoGen | Lrrc29 | PhenoGen |
PROSITE | FBOX | UniProtKB/TrEMBL |
SMART | LRR_CC | UniProtKB/TrEMBL |
Superfamily-SCOP | RNI-like | UniProtKB/TrEMBL |
SSF81383 | UniProtKB/TrEMBL | |
UniProt | A0A8I5ZYV1_RAT | UniProtKB/TrEMBL |
A0A8I6AH53_RAT | UniProtKB/TrEMBL | |
A0A8I6AVS5_RAT | UniProtKB/TrEMBL | |
B2RYK7_RAT | UniProtKB/TrEMBL | |
F7EKW8 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2006-11-20 | LOC502201 | similar to CG8272-PA | Symbol and Name status set to provisional | 70820 | PROVISIONAL |