Mtif3 (mitochondrial translational initiation factor 3) - Rat Genome Database

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Gene: Mtif3 (mitochondrial translational initiation factor 3) Rattus norvegicus
Analyze
Symbol: Mtif3
Name: mitochondrial translational initiation factor 3
RGD ID: 1592673
Description: Predicted to enable ribosomal small subunit binding activity; ribosome binding activity; and translation initiation factor activity. Predicted to be involved in mitochondrial translational initiation and ribosome disassembly. Predicted to be active in mitochondrion. Orthologous to human MTIF3 (mitochondrial translational initiation factor 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC684274; LOC684274; similar to RIKEN cDNA 2810012L14; translation initiation factor IF-3, mitochondrial; uncharacterized protein LOC684274
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2128,126,193 - 8,140,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,126,276 - 8,140,470 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,928,032 - 8,939,181 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0129,551,222 - 9,562,370 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0128,574,633 - 8,585,781 (+)NCBIRnor_WKY
Rnor_6.0129,846,355 - 9,857,548 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,846,398 - 9,857,548 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,958,123 - 11,969,308 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera129,948,474 - 9,959,628 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12095986   PMID:12477932  


Genomics

Comparative Map Data
Mtif3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2128,126,193 - 8,140,706 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,126,276 - 8,140,470 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,928,032 - 8,939,181 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0129,551,222 - 9,562,370 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0128,574,633 - 8,585,781 (+)NCBIRnor_WKY
Rnor_6.0129,846,355 - 9,857,548 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,846,398 - 9,857,548 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,958,123 - 11,969,308 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera129,948,474 - 9,959,628 (+)NCBICelera
Cytogenetic Map12p11NCBI
MTIF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,435,643 - 27,450,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1327,435,643 - 27,450,591 (-)EnsemblGRCh38hg38GRCh38
GRCh371328,009,780 - 28,024,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361326,907,780 - 26,922,711 (-)NCBINCBI36Build 36hg18NCBI36
Celera139,078,456 - 9,093,430 (-)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef138,831,142 - 8,846,123 (-)NCBIHuRef
CHM1_11327,977,957 - 27,992,936 (-)NCBICHM1_1
T2T-CHM13v2.01326,656,396 - 26,671,336 (-)NCBIT2T-CHM13v2.0
Mtif3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,888,383 - 146,900,665 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,888,383 - 146,900,610 (-)EnsemblGRCm39 Ensembl
GRCm385146,951,573 - 146,963,855 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,951,573 - 146,963,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv375147,766,098 - 147,775,350 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,265,278 - 147,274,123 (-)NCBIMGSCv36mm8
Celera5144,941,386 - 144,950,638 (-)NCBICelera
Cytogenetic Map5G3NCBI
Mtif3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554976,852,164 - 6,872,233 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554976,852,137 - 6,872,217 (-)NCBIChiLan1.0ChiLan1.0
MTIF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11327,070,048 - 27,085,099 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,070,048 - 27,076,402 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0138,724,773 - 8,739,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTIF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12512,157,301 - 12,171,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2512,166,891 - 12,171,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,221,074 - 12,234,781 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,287,081 - 12,301,207 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,286,091 - 12,301,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,182,410 - 12,194,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,173,274 - 12,186,962 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,218,177 - 12,232,289 (+)NCBIUU_Cfam_GSD_1.0
Mtif3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,261,540 - 173,268,457 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647222,683,691 - 22,690,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTIF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,866,023 - 4,879,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,866,017 - 4,880,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,404,472 - 4,418,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTIF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,611,755 - 6,627,546 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl36,611,786 - 6,616,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605737,774,917 - 37,790,215 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtif3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477611,066,636 - 11,070,677 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477611,055,988 - 11,070,714 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D16S3131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2128,125,820 - 8,126,537 (+)MAPPERmRatBN7.2
mRatBN7.24161,471,574 - 161,471,768 (-)MAPPERmRatBN7.2
Rnor_6.04161,519,984 - 161,520,177NCBIRnor6.0
Rnor_6.0129,845,918 - 9,846,634NCBIRnor6.0
Rnor_5.04226,727,036 - 226,727,229UniSTSRnor5.0
Rnor_5.01211,957,673 - 11,958,389UniSTSRnor5.0
RGSC_v3.44165,212,044 - 165,212,237UniSTSRGSC3.4
Celera4150,174,341 - 150,174,534UniSTS
Celera129,947,994 - 9,948,710UniSTS
Cytogenetic Map4q42UniSTS
RH127547  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,201,535 - 185,201,724 (+)MAPPERmRatBN7.2
mRatBN7.2128,136,829 - 8,137,213 (+)MAPPERmRatBN7.2
Rnor_6.0129,856,925 - 9,857,308NCBIRnor6.0
Rnor_6.02199,776,213 - 199,776,401NCBIRnor6.0
Rnor_5.01211,968,680 - 11,969,063UniSTSRnor5.0
Rnor_5.02219,254,159 - 219,254,347UniSTSRnor5.0
RGSC_v3.42192,442,430 - 192,442,618UniSTSRGSC3.4
Celera129,959,005 - 9,959,388UniSTS
Celera2177,694,036 - 177,694,224UniSTS
RH 3.4 Map21255.3UniSTS
AI548830  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2128,131,847 - 8,131,983 (+)MAPPERmRatBN7.2
Rnor_6.0129,851,943 - 9,852,078NCBIRnor6.0
Rnor_5.01211,963,698 - 11,963,833UniSTSRnor5.0
Celera129,954,023 - 9,954,158UniSTS
RH 3.4 Map12108.0UniSTS
BF390712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2128,137,222 - 8,137,377 (+)MAPPERmRatBN7.2
Rnor_6.0129,857,318 - 9,857,472NCBIRnor6.0
Rnor_5.01211,969,073 - 11,969,227UniSTSRnor5.0
Celera129,959,398 - 9,959,552UniSTS
RH 3.4 Map12108.6UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:62
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000075162
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 23 52 37 19 37 3 56 35 41 11
Low 20 5 4 4 8 8 18 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075162   ⟹   ENSRNOP00000066295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl129,846,398 - 9,857,548 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101611   ⟹   ENSRNOP00000084128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,126,276 - 8,140,470 (+)Ensembl
RefSeq Acc Id: NM_001115041   ⟹   NP_001108513
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2128,126,301 - 8,137,453 (+)NCBI
Rnor_6.0129,846,398 - 9,857,548 (+)NCBI
Rnor_5.01211,958,123 - 11,969,308 (+)NCBI
Celera129,948,474 - 9,959,628 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248837   ⟹   XP_006248899
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2128,126,193 - 8,140,706 (+)NCBI
Rnor_6.0129,846,355 - 9,857,548 (+)NCBI
Rnor_5.01211,958,123 - 11,969,308 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001108513 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58795 (Get FASTA)   NCBI Sequence Viewer  
  EDL89571 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001108513   ⟸   NM_001115041
- UniProtKB: B0BNE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248899   ⟸   XM_006248837
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000066295   ⟸   ENSRNOT00000075162
RefSeq Acc Id: ENSRNOP00000084128   ⟸   ENSRNOT00000101611
Protein Domains
IF3_N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BNE9-F1-model_v2 AlphaFold B0BNE9 1-276 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698405
Promoter ID:EPDNEW_R8930
Type:initiation region
Name:Mtif3_1
Description:mitochondrial translational initiation factor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0129,846,373 - 9,846,433EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592673 AgrOrtholog
BioCyc Gene G2FUF-20103 BioCyc
Ensembl Genes ENSRNOG00000047329 Ensembl
  ENSRNOG00000070811 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000084128 ENTREZGENE
  ENSRNOP00000084128.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000101611 ENTREZGENE
  ENSRNOT00000101611.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.80 UniProtKB/TrEMBL
  3.30.110.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314259 IMAGE-MGC_LOAD
InterPro T_IF-3_C_sf UniProtKB/TrEMBL
  T_IF-3_N_sf UniProtKB/TrEMBL
  Translation_initiation_fac_3 UniProtKB/TrEMBL
  Translation_initiation_fac_3_N UniProtKB/TrEMBL
KEGG Report rno:684274 UniProtKB/TrEMBL
MGC_CLONE MGC:188178 IMAGE-MGC_LOAD
NCBI Gene 684274 ENTREZGENE
PANTHER IF3 UniProtKB/TrEMBL
Pfam IF3_N UniProtKB/TrEMBL
PhenoGen Mtif3 PhenoGen
Superfamily-SCOP IF3 UniProtKB/TrEMBL
  IF3 UniProtKB/TrEMBL
UniProt A0A8I5ZWK9_RAT UniProtKB/TrEMBL
  B0BNE9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-13 Mtif3  mitochondrial translational initiation factor 3  LOC684274  similar to RIKEN cDNA 2810012L14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC684274  similar to RIKEN cDNA 2810012L14      Symbol and Name status set to provisional 70820 PROVISIONAL