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Gene: Clgn (calmegin) Rattus norvegicus
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Symbol: Clgn
Name: calmegin
Description: Predicted to have calcium ion binding activity and protein folding chaperone. Predicted to be involved in several processes, including binding activity of sperm to zona pellucida; endoplasmic reticulum unfolded protein response; and protein folding. Predicted to localize to endoplasmic reticulum; endoplasmic reticulum membrane; and nuclear envelope. Orthologous to human CLGN (calmegin); INTERACTS WITH 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC685504; similar to Calmegin precursor (MEG 1 antigen) (Calnexin-T) (A2/6)
Orthologs:
Homo sapiens (human) : CLGN (calmegin)  HGNC  Alliance
Mus musculus (house mouse) : Clgn (calmegin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clgn (calmegin)
Pan paniscus (bonobo/pygmy chimpanzee) : CLGN (calmegin)
Canis lupus familiaris (dog) : CLGN (calmegin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clgn (calmegin)
Sus scrofa (pig) : CLGN (calmegin)
Chlorocebus sabaeus (African green monkey) : CLGN (calmegin)
Heterocephalus glaber (naked mole-rat) : Clgn (calmegin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01924,545,257 - 24,578,527 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,545,318 - 24,576,798 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,523,686 - 35,556,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,404,126 - 26,436,081 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1924,238,158 - 24,269,769 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clgn
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1592643
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.