Snrpel1 (small nuclear ribonucleoprotein polypeptide E like1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Snrpel1 (small nuclear ribonucleoprotein polypeptide E like1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Snrpel1
Name: small nuclear ribonucleoprotein polypeptide E like1 (Ensembl:small nuclear ribonucleoprotein polypeptide E-like1)
RGD ID: 1592561
Description: Predicted to enable RNA binding activity.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC685587; similar to small nuclear ribonucleoprotein E; small nuclear ribonucleoprotein E; small nuclear ribonucleoprotein E-like; small nuclear ribonucleoprotein polypeptide E; small nuclear ribonucleoprotein polypeptide E-like1; Snrpe
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Snrpe  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28120,416,620 - 120,417,066 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,416,603 - 120,417,059 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08129,371,546 - 129,371,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08128,569,148 - 128,569,577 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,713,248 - 125,713,526 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8119,558,007 - 119,558,455 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Snrpel1
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000042614   ⟹   ENSRNOP00000047775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,416,603 - 120,417,059 (-)Ensembl
Rnor_6.0 Ensembl8129,371,556 - 129,371,973 (-)Ensembl
RefSeq Acc Id: XM_039082730   ⟹   XP_038938658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28120,416,620 - 120,417,066 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038938658 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038938658   ⟸   XM_039082730
RefSeq Acc Id: ENSRNOP00000047775   ⟸   ENSRNOT00000042614
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSP1-F1-model_v2 AlphaFold D3ZSP1 1-92 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696395
Promoter ID:EPDNEW_R6911
Type:single initiation site
Name:Snrpe_1
Description:small nuclear ribonucleoprotein polypeptide E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08129,371,970 - 129,372,030EPDNEW

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28717 BioCyc
Ensembl Genes ENSRNOG00000031127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000047775 ENTREZGENE
  ENSRNOP00000047775.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042614 ENTREZGENE
  ENSRNOT00000042614.3 UniProtKB/TrEMBL
InterPro LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  snRNP-E UniProtKB/TrEMBL
NCBI Gene 685587 ENTREZGENE
PANTHER PTHR11193 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpel1 PhenoGen
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt D3ZSP1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-09 Snrpel1  small nuclear ribonucleoprotein polypeptide E like1  Snrpel1  small nuclear ribonucleoprotein polypeptide E-like1  Name changed 629549 APPROVED
2012-08-08 Snrpel1  small nuclear ribonucleoprotein polypeptide E-like1  Snrpe  small nuclear ribonucleoprotein polypeptide E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Snrpe  small nuclear ribonucleoprotein polypeptide E  Snrpe  small nuclear ribonucleoprotein E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Snrpe  small nuclear ribonucleoprotein E  LOC685587  similar to small nuclear ribonucleoprotein E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685587  similar to small nuclear ribonucleoprotein E  LOC687315  similar to small nuclear ribonucleoprotein E  Data Merged 1643240 APPROVED
2006-11-20 LOC685587  similar to small nuclear ribonucleoprotein E      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687315  similar to small nuclear ribonucleoprotein E      Symbol and Name status set to provisional 70820 PROVISIONAL