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Analyze GeneStrainQTL List |
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![]() Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | (S)-nicotine | multiple interactions | ISO | RGD:1352947 | 6480464 | alpha-cobratoxin inhibits the reaction [Nicotine results in increased expression of GOLGA4 mRNA], Tubocurarine inhibits the reaction [Nicotine results in increased expression of GOLGA4 mRNA] | CTD | PMID:16949557 | (S)-nicotine | increases expression | ISO | RGD:1352947 | 6480464 | Nicotine results in increased expression of GOLGA4 mRNA | CTD | PMID:16949557 | 1-nitropyrene | increases expression | ISO | RGD:1352947 | 6480464 | 1-nitropyrene results in increased expression of GOLGA4 mRNA | CTD | PMID:19041380 | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:1557150 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GOLGA4 mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | decreases expression | EXP | | 6480464 | Ethinyl Estradiol results in decreased expression of GOLGA4 mRNA | CTD | PMID:29097150 | 17beta-hydroxy-5alpha-androstan-3-one | increases expression | ISO | RGD:1352947 | 6480464 | Dihydrotestosterone results in increased expression of GOLGA4 mRNA | CTD | PMID:29581250 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:1557150 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GOLGA4 mRNA | CTD | PMID:17942748 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:1557150 | 6480464 | Tetrachlorodibenzodioxin affects the expression of GOLGA4 mRNA | CTD | PMID:21570461 | 4,4'-diaminodiphenylmethane | increases expression | ISO | RGD:1557150 | 6480464 | 4, 4'-diaminodiphenylmethane results in increased expression of GOLGA4 mRNA | CTD | PMID:18648102 | aflatoxin B1 | increases expression | ISO | RGD:1557150 | 6480464 | Aflatoxin B1 results in increased expression of GOLGA4 mRNA | CTD | PMID:19770486 | aflatoxin M1 | decreases expression | ISO | RGD:1352947 | 6480464 | Aflatoxin M1 results in decreased expression of GOLGA4 mRNA | CTD | PMID:30928695 | arsane | decreases expression | ISO | RGD:1352947 | 6480464 | Arsenic results in decreased expression of GOLGA4 mRNA | CTD | PMID:16835338 | arsane | affects methylation | ISO | RGD:1352947 | 6480464 | Arsenic affects the methylation of GOLGA4 gene | CTD | PMID:25304211 | arsane | decreases expression | ISO | RGD:1557150 | 6480464 | Arsenic results in decreased expression of GOLGA4 mRNA | CTD | PMID:19654921 | arsenic atom | decreases expression | ISO | RGD:1352947 | 6480464 | Arsenic results in decreased expression of GOLGA4 mRNA | CTD | PMID:16835338 | arsenic atom | affects methylation | ISO | RGD:1352947 | 6480464 | Arsenic affects the methylation of GOLGA4 gene | CTD | PMID:25304211 | arsenic atom | decreases expression | ISO | RGD:1557150 | 6480464 | Arsenic results in decreased expression of GOLGA4 mRNA | CTD | PMID:19654921 | benzo[a]pyrene | increases expression | ISO | RGD:1557150 | 6480464 | Benzo(a)pyrene results in increased expression of GOLGA4 mRNA | CTD | PMID:22228805 | benzo[a]pyrene diol epoxide I | decreases expression | ISO | RGD:1352947 | 6480464 | 7 more ... | CTD | PMID:19150397, PMID:26238291 | bisphenol A | increases expression | EXP | | 6480464 | bisphenol A results in increased expression of GOLGA4 mRNA | CTD | PMID:25181051 | bisphenol A | increases methylation | EXP | | 6480464 | bisphenol A results in increased methylation of GOLGA4 gene | CTD | PMID:28505145 | cadmium dichloride | decreases expression | ISO | RGD:1557150 | 6480464 | Cadmium Chloride results in decreased expression of GOLGA4 mRNA | CTD | PMID:24982889 | carbon nanotube | decreases expression | ISO | RGD:1557150 | 6480464 | Nanotubes, Carbon analog results in decreased expression of GOLGA4 mRNA, Nanotubes, Carbon results in decreased expression of GOLGA4 mRNA | CTD | PMID:25554681 | carmustine | increases expression | ISO | RGD:1352947 | 6480464 | Carmustine results in increased expression of GOLGA4 mRNA | CTD | PMID:15980968 | chromium(6+) | affects expression | ISO | RGD:1557150 | 6480464 | chromium hexavalent ion affects the expression of GOLGA4 mRNA | CTD | PMID:28472532 | cisplatin | decreases phosphorylation | ISO | RGD:1557150 | 6480464 | Cisplatin results in decreased phosphorylation of GOLGA4 protein | CTD | PMID:22006019 | cisplatin | decreases expression | EXP | | 6480464 | Cisplatin results in decreased expression of GOLGA4 mRNA | CTD | PMID:22023808 | clorgyline | increases expression | ISO | RGD:1352947 | 6480464 | Clorgyline results in increased expression of GOLGA4 mRNA | CTD | PMID:19691856 | copper(II) sulfate | decreases expression | ISO | RGD:1352947 | 6480464 | Copper Sulfate results in decreased expression of GOLGA4 mRNA | CTD | PMID:19549813 | cyclosporin A | increases expression | ISO | RGD:1352947 | 6480464 | Cyclosporine results in increased expression of GOLGA4 mRNA | CTD | PMID:20106945, PMID:25562108 | dorsomorphin | multiple interactions | ISO | RGD:1352947 | 6480464 | [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GOLGA4 mRNA | CTD | PMID:27188386 | doxorubicin | decreases expression | ISO | RGD:1557150 | 6480464 | Doxorubicin results in decreased expression of GOLGA4 mRNA | CTD | PMID:19277126 | formaldehyde | increases expression | ISO | RGD:1352947 | 6480464 | Formaldehyde results in increased expression of GOLGA4 mRNA | CTD | PMID:23649840 | hexadecanoic acid | decreases phosphorylation | ISO | RGD:1352947 | 6480464 | Palmitic Acid results in decreased phosphorylation of GOLGA4 protein | CTD | PMID:28073184 | hydrogen peroxide | decreases expression | ISO | RGD:1352947 | 6480464 | Hydrogen Peroxide results in decreased expression of GOLGA4 mRNA | CTD | PMID:18951874 | lead(0) | affects splicing | ISO | RGD:1352947 | 6480464 | Lead affects the splicing of GOLGA4 mRNA | CTD | PMID:28903495 | lead(2+) | affects splicing | ISO | RGD:1352947 | 6480464 | Lead affects the splicing of GOLGA4 mRNA | CTD | PMID:28903495 | linsidomine | increases oxidation | EXP | | 6480464 | linsidomine results in increased oxidation of GOLGA4 protein | CTD | PMID:28086193 | Mecamylamine | increases expression | ISO | RGD:1352947 | 6480464 | Mecamylamine results in increased expression of GOLGA4 mRNA | CTD | PMID:16949557 | methapyrilene | decreases expression | EXP | | 6480464 | Methapyrilene results in decreased expression of GOLGA4 mRNA | CTD | PMID:30467583 | methyl methanesulfonate | increases expression | ISO | RGD:1352947 | 6480464 | Methyl Methanesulfonate results in increased expression of GOLGA4 mRNA | CTD | PMID:23649840 | methylmercury chloride | decreases expression | ISO | RGD:1352947 | 6480464 | methylmercuric chloride results in decreased expression of GOLGA4 mRNA | CTD | PMID:28001369 | nicotine | multiple interactions | ISO | RGD:1352947 | 6480464 | alpha-cobratoxin inhibits the reaction [Nicotine results in increased expression of GOLGA4 mRNA], Tubocurarine inhibits the reaction [Nicotine results in increased expression of GOLGA4 mRNA] | CTD | PMID:16949557 | nicotine | increases expression | ISO | RGD:1352947 | 6480464 | Nicotine results in increased expression of GOLGA4 mRNA | CTD | PMID:16949557 | oxaliplatin | multiple interactions | EXP | | 6480464 | [oxaliplatin co-treated with Topotecan] results in decreased expression of GOLGA4 mRNA | CTD | PMID:25729387 | paracetamol | affects expression | ISO | RGD:1557150 | 6480464 | Acetaminophen affects the expression of GOLGA4 mRNA | CTD | PMID:17562736 | perfluorooctane-1-sulfonic acid | decreases expression | ISO | RGD:1352947 | 6480464 | perfluorooctane sulfonic acid results in decreased expression of GOLGA4 mRNA | CTD | PMID:27153767 | phenobarbital | decreases expression | ISO | RGD:1557150 | 6480464 | Phenobarbital results in decreased expression of GOLGA4 mRNA | CTD | PMID:23091169 | PhIP | increases expression | EXP | | 6480464 | 2-amino-1-methyl-6-phenylimidazo(4, 5-b)pyridine results in increased expression of GOLGA4 mRNA | CTD | PMID:15215175 | rotenone | increases expression | EXP | | 6480464 | Rotenone results in increased expression of GOLGA4 mRNA | CTD | PMID:19013527 | SB 431542 | multiple interactions | ISO | RGD:1352947 | 6480464 | [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GOLGA4 mRNA | CTD | PMID:27188386 | sodium arsenate | increases expression | ISO | RGD:1557150 | 6480464 | sodium arsenate results in increased expression of GOLGA4 mRNA | CTD | PMID:21795629 | sodium arsenite | affects methylation | ISO | RGD:1352947 | 6480464 | sodium arsenite affects the methylation of GOLGA4 gene | CTD | PMID:28589171 | succimer | multiple interactions | ISO | RGD:1557150 | 6480464 | [Succimer binds to Magnetite Nanoparticles] which results in decreased expression of GOLGA4 mRNA | CTD | PMID:21641980 | testosterone enanthate | affects expression | ISO | RGD:1352947 | 6480464 | testosterone enanthate affects the expression of GOLGA4 mRNA | CTD | PMID:17440010 | titanium dioxide | increases expression | ISO | RGD:1557150 | 6480464 | titanium dioxide results in increased expression of GOLGA4 mRNA | CTD | PMID:23131501 | toluene | increases expression | ISO | RGD:1352947 | 6480464 | Toluene results in increased expression of GOLGA4 mRNA | CTD | PMID:28245982 | topotecan | multiple interactions | EXP | | 6480464 | [oxaliplatin co-treated with Topotecan] results in decreased expression of GOLGA4 mRNA | CTD | PMID:25729387 | trichostatin A | increases expression | ISO | RGD:1352947 | 6480464 | trichostatin A results in increased expression of GOLGA4 mRNA | CTD | PMID:24935251, PMID:26272509 | trichostatin A | multiple interactions | ISO | RGD:1352947 | 6480464 | [NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1, 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of GOLGA4 mRNA | CTD | PMID:27188386 | troglitazone | decreases expression | ISO | RGD:1557150 | 6480464 | troglitazone results in decreased expression of GOLGA4 mRNA | CTD | PMID:28973697 | trovafloxacin | multiple interactions | ISO | RGD:1557150 | 6480464 | [trovafloxacin co-treated with lipopolysaccharide, E coli O55-B5] results in decreased expression of GOLGA4 mRNA | CTD | PMID:18930950 | tubocurarine | decreases expression | ISO | RGD:1352947 | 6480464 | Tubocurarine results in decreased expression of GOLGA4 mRNA | CTD | PMID:16949557 | tubocurarine | multiple interactions | ISO | RGD:1352947 | 6480464 | Tubocurarine inhibits the reaction [Nicotine results in increased expression of GOLGA4 mRNA] | CTD | PMID:16949557 | tunicamycin | increases expression | ISO | RGD:1352947 | 6480464 | Tunicamycin results in increased expression of GOLGA4 mRNA | CTD | PMID:22378314 | |
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Golga4 (Rattus norvegicus - Norway rat) |
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GOLGA4 (Homo sapiens - human) |
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Golga4 (Mus musculus - house mouse) |
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Golga4 (Chinchilla lanigera - long-tailed chinchilla) |
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GOLGA4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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GOLGA4 (Canis lupus familiaris - dog) |
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Golga4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GOLGA4 (Sus scrofa - pig) |
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D8Rat2 |
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RH143454 |
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RH129880 |
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RH138253 |
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RH139299 |
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RH135993 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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High | ||||||||||||||||
Medium | 22 | 43 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 41 | 35 | 8 | 8 |
Low | ||||||||||||||||
Below cutoff |
RefSeq Transcripts | NM_001191080 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006244126 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006244132 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006244133 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595853 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595854 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595856 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595857 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017595858 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AABR07071716 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AABR07071717 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01057495 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01057496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC085124 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ231542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_001191080 ⟹ NP_001178009 | |||||||||||||||||||
RefSeq Status: | PROVISIONAL | |||||||||||||||||||
Type: | CODING | |||||||||||||||||||
Position: |
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Sequence: |
ATGTTCAAGAAGCTGAAGCAGAAGATCAGCGAGGAGCAGCAGCAGCTGCAGCAGGCGCTAGCCChide sequence |
RefSeq Acc Id: | XM_006244126 ⟹ XP_006244188 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
GCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGACGhide sequence |
RefSeq Acc Id: | XM_006244132 ⟹ XP_006244194 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
GCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGACGhide sequence |
RefSeq Acc Id: | XM_006244133 ⟹ XP_006244195 | ||||||||||||||
RefSeq Status: | |||||||||||||||
Type: | CODING | ||||||||||||||
Position: |
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Sequence: |
GCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGACGhide sequence |
RefSeq Acc Id: | XM_017595852 ⟹ XP_017451341 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GGCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGAChide sequence |
RefSeq Acc Id: | XM_017595853 ⟹ XP_017451342 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GGCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGAChide sequence |
RefSeq Acc Id: | XM_017595854 ⟹ XP_017451343 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
CCGCCGACCCCTCGCCGCGCCATGTTCAAGAAGCTGAAGCAGAAGATCAGCGAGGAGCAGCAGChide sequence |
RefSeq Acc Id: | XM_017595855 ⟹ XP_017451344 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GGCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGAChide sequence |
RefSeq Acc Id: | XM_017595856 ⟹ XP_017451345 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GGCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGAChide sequence |
RefSeq Acc Id: | XM_017595857 ⟹ XP_017451346 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
GCCGCGCAGGCGCCTAGGGCGCGTTCACCTGCTGCCGTTGTCGCCGCCGCCGCCGCCGCTGACGhide sequence |
RefSeq Acc Id: | XM_017595858 ⟹ XP_017451347 | |||||||||
RefSeq Status: | ||||||||||
Type: | CODING | |||||||||
Position: |
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Sequence: |
ACCCCTGCCTTCCTCACTGTGGTGCTCAGTGGCGCGATGCTCCCTATCTGACTCCACAGCTCCAhide sequence |
Protein RefSeqs | NP_001178009 | (Get FASTA) | NCBI Sequence Viewer |
XP_006244188 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006244194 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006244195 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451341 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451342 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451343 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451344 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451345 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451346 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017451347 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH85124 | (Get FASTA) | NCBI Sequence Viewer |
Q5U4E6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001178009 ⟸ NM_001191080 |
- UniProtKB: | A0A0G2K9I3 (UniProtKB/TrEMBL) |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRESGDTQTFAQKhide sequence |
RefSeq Acc Id: | XP_006244194 ⟸ XM_006244132 |
- Peptide Label: | isoform X2 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_006244188 ⟸ XM_006244126 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A0G2JUE4 (UniProtKB/TrEMBL) |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_006244195 ⟸ XM_006244133 |
- Peptide Label: | isoform X10 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRENASTQATKSPhide sequence |
RefSeq Acc Id: | XP_017451347 ⟸ XM_017595858 |
- Peptide Label: | isoform X9 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_017451342 ⟸ XM_017595853 |
- Peptide Label: | isoform X4 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_017451345 ⟸ XM_017595856 |
- Peptide Label: | isoform X7 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_017451341 ⟸ XM_017595852 |
- Peptide Label: | isoform X1 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_017451344 ⟸ XM_017595855 |
- Peptide Label: | isoform X6 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAhide sequence |
RefSeq Acc Id: | XP_017451346 ⟸ XM_017595857 |
- Peptide Label: | isoform X8 |
- Sequence: |
MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRENASTQATKSPhide sequence |
RefSeq Acc Id: | XP_017451343 ⟸ XM_017595854 |
- Peptide Label: | isoform X5 |
- Sequence: |
MFLLRASSSSSTPTRTRSRTSSFTDQLDDATPNRELLAGMVAEPAFLSEYTIFALDPSKQPKTQhide sequence |
RGD ID: | 13696364 | |||||||||
Promoter ID: | EPDNEW_R6887 | |||||||||
Type: | multiple initiation site | |||||||||
Name: | Golga4_1 | |||||||||
Description: | golgin A4 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
8 | 126413019 | 126413020 | A | G | snv | COP/CrCrl (MCW & UW), WAG/Rij (KNAW), SBN/Ygl (KNAW), FHH/EurMcwi (KNAW), LE/Stm (SOLiD) (KNAW), WN/N (KNAW), IS/Kyo (KyushuU), LE/Stm (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), ZF (KyushuU), GH/OmrMcwi (MCW), MR/N (KNAW), SR/JrHsd (KNAW), GK/Ox (KNAW), SBN/Ygl (MCW), LL/MavRrrc (KNAW), SHR/OlaIpcvPrin (KNAW), WKY/N (KNAW), BUF/N (KNAW), F344/NRrrc (SOLiD) (KNAW), LEW/NCrl (KNAW), LH/MavRrrc (KNAW), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LN/MavRrrc (KNAW), SS/Jr (KNAW), WKY/Gcrc (KNAW), F344/NCrl (KNAW), M520/N (KNAW), MNS/Gib (KNAW), SDLEF7/Barth (UDEL), F344/DuCrlCrlj (KyushuU), F344/Stm (KyushuU), ACI/EurMcwi (MCW), ACI/N (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), F344/NHsd (KNAW), FHL/EurMcwi (KNAW), LE/Stm (Illumina) (KNAW), LEW/Crl (KNAW), LE/OrlBarth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), F344/NSlc (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZFDM (KyushuU), SBH/Ygl (MCW), MHS/Gib (KNAW), SS/JrHsdMcwi (KNAW), ACI/EurMcwi (KNAW), SHR/NHsd (KNAW), WKY/NHsd (KNAW), IS-Tlk/Kyo (KyushuU), FHH/EurMcwi (MCW), BBDP/WorN (KNAW), SBH/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/OlaIpcv (KNAW), WKY/NCrl (KNAW), DA/BklArbNsi (KNAW), RCS/Kyo (KyushuU), DOB/Oda (KyushuU), KFRS3B/Kyo (KyushuU) |
8 | 126448632 | 126448633 | C | T | snv | SHR/NHsd (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcv (KNAW), SHR/NCrlPrin (KNAW), SHR/OlaIpcvPrin (KNAW) |
8 | 126449307 | 126449308 | G | A | snv | GH/OmrMcwi (MCW), SS/JrHsdMcwi (KNAW), SR/JrHsd (KNAW), F344/Stm (KyushuU), ZF (KyushuU), SR/JrHsd (MCW), LN/MavRrrc (KNAW), SS/Jr (KNAW), F344/NHsd (KNAW), LH/MavRrrc (KNAW), MHS/Gib (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/Jcl (KyushuU), LL/MavRrrc (KNAW), F344/NRrrc (Illumina) (KNAW), F344/NCrl (KNAW), LEW/NCrl (KNAW), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), MNS/Gib (KNAW), LEW/Crl (KNAW), F344/NSlc (KyushuU), SS/JrHsdMcwi (MCW) |
Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
8 | 127190713 | 127190714 | A | G | snv | ACI/EurMcwi (MCW), WAG/Rij (RGD), FHL/EurMcwi (MCW), SBH/Ygl (RGD), LEW/Crl (RGD), LE/Stm (RGD), FHH/EurMcwi (RGD), FHL/EurMcwi (RGD), ACI/N (MCW), WKY/NHsd (RGD), SS/JrHsdMcwi (RGD), SR/JrHsd (RGD), ACI/EurMcwi (RGD), F344/NRrrc (MCW), Buf/N (MCW), GH/OmrMcwi (MCW), WKY/NCrl (RGD), SHRSP/Gcrc (RGD), SBN/Ygl (RGD), WKY/N (MCW), LL/MavRrrc (RGD), SHR/NHsd (RGD), SBN/Ygl (MCW), BBDP/Wor (RGD), GK/Ox (RGD), LN/MavRrrc (RGD), MHS/Gib (RGD), SS/Jr (RGD), FHH/EurMcwi (MCW), SR/JrHsd (MCW), M520/N (MCW), F344/NCrl (RGD), LEW/NCrlBR (RGD), COP/CrCrl (MCW & UW), LH/MavRrrc (RGD), MNS/Gib (RGD), WKY/Gcrc (RGD), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), CDR, CDS |
8 | 127226326 | 127226327 | C | T | snv | SHR/NHsd (RGD), SHRSP/Gcrc (RGD) |
8 | 127227001 | 127227002 | G | A | snv | CDR, SS/Jr (RGD), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), LL/MavRrrc (RGD), SR/JrHsd (RGD), MHS/Gib (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), MNS/Gib (RGD), LEW/Crl (RGD), F344/NRrrc (MCW), SS/JrHsdMcwi (RGD), F344/NCrl (RGD), LEW/NCrlBR (RGD), SR/JrHsd (MCW) |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1591925 | AgrOrtholog |
Ensembl Genes | ENSRNOG00000029910 | ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Protein | ENSRNOP00000039533 | UniProtKB/Swiss-Prot |
ENSRNOP00000069066 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSRNOP00000075007 | ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000051290 | UniProtKB/Swiss-Prot |
ENSRNOT00000078625 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSRNOT00000087753 | ENTREZGENE, UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7123209 | IMAGE-MGC_LOAD |
InterPro | GRIP_dom | UniProtKB/Swiss-Prot |
KEGG Report | rno:501069 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:105866 | IMAGE-MGC_LOAD |
NCBI Gene | 501069 | ENTREZGENE |
Pfam | GRIP | UniProtKB/Swiss-Prot |
PhenoGen | Golga4 | PhenoGen |
PROSITE | GRIP | UniProtKB/Swiss-Prot |
SMART | Grip | UniProtKB/Swiss-Prot |
UniGene | Rn.198228 | ENTREZGENE |
UniProt | A0A0G2JUE4 | ENTREZGENE, UniProtKB/TrEMBL |
A0A0G2K9I3 | ENTREZGENE, UniProtKB/TrEMBL | |
GOGA4_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2011-08-02 | Golga4 | golgin A4 | Golga4 | golgi autoantigen, golgin subfamily a, 4 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-05 | Golga4 | golgi autoantigen, golgin subfamily a, 4 | LOC501069 | similar to golgi autoantigen golgin subtype a4; tGolgin-1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-11-20 | LOC501069 | similar to golgi autoantigen golgin subtype a4; tGolgin-1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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More on Golga4 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
RGD Object Information | |
RGD ID: | 1591925 |
Created: | 2006-11-20 |
Species: | Rattus norvegicus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.