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Gene: Golga4 (golgin A4) Rattus norvegicus

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Symbol:

Golga4

Name:

golgin A4

RGD ID:

1591925

Description:

Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi to plasma membrane protein transport and positive regulation of axon extension. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GOLGA4 (golgin A4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

golgi autoantigen, golgin subfamily a, 4; Golgin subfamily A member 4; LOC501069; similar to golgi autoantigen golgin subtype a4; tGolgin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GOLGA4 (golgin A4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Golga4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Golga4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GOLGA4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GOLGA4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Golga4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GOLGA4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GOLGA4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Golga4 (golgin A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GOLGA4 (golgin A4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Golga4 (golgin A4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	golga4 (golgin A4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	golg-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	golg-4	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Golgin245	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Golgin245	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golga4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golga4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	127,085,848 - 127,163,603 (+)	Ensembl				GRCr8
mRatBN7.2	8	118,208,200 - 118,285,003 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	8	123,807,532 - 123,885,204 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,006,475 - 122,084,146 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	119,838,918 - 119,917,014 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	127,171,221 - 127,248,938 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	127,171,537 - 127,248,538 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	126,393,530 - 126,471,244 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	123,404,540 - 123,504,104 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	117,393,586 - 117,470,254 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arsenic Poisoning (ISO)

Lynch syndrome (ISO)

Prostatic Neoplasms (ISO)

skin disease (ISO)

visceral heterotaxy 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-palmitoylglycerol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

chromium(6+) (ISO)

cisplatin (EXP,ISO)

clorgyline (ISO)

copper(II) sulfate (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dextran sulfate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Evodiamine (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

ivermectin (ISO)

lead(0) (ISO)

linsidomine (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

Mecamylamine (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nicotine (ISO)

Nivalenol (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

PhIP (EXP)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

toluene (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triticonazole (EXP)

troglitazone (ISO)

trovafloxacin (ISO)

tubocurarine (ISO)

tunicamycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi to plasma membrane protein transport (ISO)

Golgi vesicle transport (IBA)

positive regulation of axon extension (ISO)

Cellular Component

cytoplasm (IEA,ISO)

Golgi apparatus (IBA,IEA,ISO)

Golgi membrane (IEA)

membrane (IEA)

nucleoplasm (ISO)

Molecular Function

GTPase binding (ISO)

protein binding (ISO)

small GTPase binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12162805	PMID:12477932	PMID:14580338	PMID:15265687	PMID:18570454	PMID:19224922	PMID:22705394

Genomics

Comparative Map Data

Golga4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	127,085,848 - 127,163,603 (+)	Ensembl				GRCr8
mRatBN7.2	8	118,208,200 - 118,285,003 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	8	123,807,532 - 123,885,204 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,006,475 - 122,084,146 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	119,838,918 - 119,917,014 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	127,171,221 - 127,248,938 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	127,171,537 - 127,248,538 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	126,393,530 - 126,471,244 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	123,404,540 - 123,504,104 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	117,393,586 - 117,470,254 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

GOLGA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	37,243,271 - 37,366,879 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	37,243,191 - 37,366,879 (+)	Ensembl			hg38	GRCh38
GRCh37	3	37,284,762 - 37,408,370 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	37,259,742 - 37,383,246 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	37,259,741 - 37,383,245	NCBI
Celera	3	37,218,214 - 37,341,938 (+)	NCBI		Celera
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	37,225,865 - 37,349,347 (+)	NCBI		HuRef
CHM1_1	3	37,236,284 - 37,359,981 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	37,244,671 - 37,368,411 (+)	NCBI		T2T-CHM13v2.0

Golga4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	118,335,280 - 118,411,587 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	118,335,335 - 118,411,587 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	118,506,196 - 118,582,519 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	118,506,267 - 118,582,519 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	118,415,436 - 118,491,637 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	118,355,016 - 118,431,217 (+)	NCBI		MGSCv36	mm8
Celera	9	118,976,652 - 119,052,515 (+)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	70.23	NCBI

Golga4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	4,131,653 - 4,243,651 (+)	Ensembl
ChiLan1.0	NW_004955421	4,130,040 - 4,251,968 (+)	NCBI	ChiLan1.0	ChiLan1.0

GOLGA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	37,205,006 - 37,325,187 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	37,209,970 - 37,329,951 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	37,149,793 - 37,269,709 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	37,437,626 - 37,556,908 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	37,442,669 - 37,545,634 (+)	Ensembl			panPan2	panpan1.1

GOLGA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	7,106,051 - 7,232,628 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	7,106,342 - 7,232,624 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	7,146,003 - 7,276,215 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	7,391,780 - 7,521,590 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	7,387,034 - 7,521,591 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	7,211,290 - 7,337,193 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	7,353,132 - 7,477,262 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	7,344,008 - 7,470,020 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Golga4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	193,602,989 - 193,699,770 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	26,741,858 - 26,838,382 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	26,741,548 - 26,838,342 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GOLGA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	22,125,121 - 22,250,463 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	22,125,131 - 22,250,465 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	24,019,468 - 24,143,177 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GOLGA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	2,046,436 - 2,162,590 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	2,046,156 - 2,162,235 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	10,782,985 - 10,899,389 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Golga4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624890	931,878 - 938,932 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	51
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000051290
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat

Markers in Region

D8Rat2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	118,218,931 - 118,219,066 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,182,508 - 127,182,642	NCBI	Rnor6.0
Rnor_5.0	8	126,404,814 - 126,404,948	UniSTS	Rnor5.0
RGSC_v3.4	8	123,415,272 - 123,415,406	UniSTS	RGSC3.4
RGSC_v3.4	8	123,415,271 - 123,415,406	RGD	RGSC3.4
Celera	8	117,404,316 - 117,404,450	UniSTS
RGSC_v3.1	8	123,435,009 - 123,435,143	RGD
RH 3.4 Map	8	1303.7	UniSTS
RH 3.4 Map	8	1303.7	RGD
RH 2.0 Map	8	1024.7	RGD
SHRSP x BN Map	8	81.9299	RGD
FHH x ACI Map	8	86.7699	RGD
Cytogenetic Map	8	q32	UniSTS

RH143454

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	127,100,336 - 127,100,467 (+)	Marker Load Pipeline
mRatBN7.2	8	118,222,454 - 118,222,585 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,186,031 - 127,186,161	NCBI	Rnor6.0
Rnor_5.0	8	126,408,337 - 126,408,467	UniSTS	Rnor5.0
RGSC_v3.4	8	123,418,795 - 123,418,925	UniSTS	RGSC3.4
Celera	8	117,407,839 - 117,407,969	UniSTS
RH 3.4 Map	8	1302.6	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH129880

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	118,285,031 - 118,285,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,248,567 - 127,248,778	NCBI	Rnor6.0
Rnor_5.0	8	126,470,873 - 126,471,084	UniSTS	Rnor5.0
RGSC_v3.4	8	123,504,133 - 123,504,344	UniSTS	RGSC3.4
Celera	8	117,470,283 - 117,470,494	UniSTS
RH 3.4 Map	8	1292.1	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH138253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	118,260,645 - 118,260,783 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,224,198 - 127,224,335	NCBI	Rnor6.0
Rnor_5.0	8	126,446,504 - 126,446,641	UniSTS	Rnor5.0
RGSC_v3.4	8	123,479,764 - 123,479,901	UniSTS	RGSC3.4
Celera	8	117,445,926 - 117,446,063	UniSTS
RH 3.4 Map	8	1291.9	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH139299

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	118,248,509 - 118,248,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,211,949 - 127,212,108	NCBI	Rnor6.0
Rnor_5.0	8	126,434,255 - 126,434,414	UniSTS	Rnor5.0
RGSC_v3.4	8	123,467,302 - 123,467,461	UniSTS	RGSC3.4
Celera	8	117,433,814 - 117,433,973	UniSTS
RH 3.4 Map	8	1290.4	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH135993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	118,285,100 - 118,285,269 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	127,248,636 - 127,248,804	NCBI	Rnor6.0
Rnor_5.0	8	126,470,942 - 126,471,110	UniSTS	Rnor5.0
RGSC_v3.4	8	123,504,202 - 123,504,370	UniSTS	RGSC3.4
Celera	8	117,470,352 - 117,470,520	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000051290 ⟹ ENSRNOP00000039533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	127,171,636 - 127,248,310 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078625 ⟹ ENSRNOP00000069066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	127,171,537 - 127,248,511 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087753 ⟹ ENSRNOP00000075007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	127,171,636 - 127,248,538 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136370 ⟹ ENSRNOP00000103026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,085,848 - 127,162,827 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151163 ⟹ ENSRNOP00000111701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,104,950 - 127,158,392 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154270 ⟹ ENSRNOP00000098962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,085,848 - 127,163,603 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158028 ⟹ ENSRNOP00000112165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,085,848 - 127,163,603 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170912 ⟹ ENSRNOP00000099161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	127,086,388 - 127,163,229 (+)	Ensembl

RefSeq Acc Id:

NM_001191080 ⟹ NP_001178009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,086,082 - 127,162,827 (+)	NCBI
mRatBN7.2	8	118,208,200 - 118,285,003 (+)	NCBI
Rnor_6.0	8	127,171,636 - 127,248,538 (+)	NCBI
Rnor_5.0	8	126,393,530 - 126,471,244 (+)	NCBI
Celera	8	117,393,586 - 117,470,254 (+)	NCBI

Sequence:

show sequence

ATGTTCAAGAAGCTGAAGCAGAAGATCAGCGAGGAGCAGCAGCAGCTGCAGCAGGCGCTAGCCC
CTGCTCAGGCTTCCTCCAGCTCTTCAACACCAACAAGGACTAGAAGCAGGACATCTTCATTTAC
AGACCAGCTTGATGACGCAACACCCAACAGAGAGTCAGGTGACACACAGACTTTTGCACAGAAG
CTGCAGCTCCGAGTGCCTTCTATGGAGTCTCTGTTTCGAAGTCCCATAAAGGAATCCCTGTTTC
GGTCTTCTAAAGAGTCTTTGGTCCGGACATCTTCCAGAGAGTCCCTGAACCAAGTTGACCTGGA
CTGTGCTGTTGCCACCTTTGATCCACCTTCTGATATGGAGAGCGAGGCTGAAGATGCTCCGTGG
AGCTCAGACAGCCTCAGCAGAGAGCAGCTGCTCCAGCGCTTGCGCAGGATGGAGCGGAGCCTGA
GCAGCTACCGAGGGAAGTACTCCGAGCTGGTCACAGCGTTTCAGACTCTTCAGAGAGAGAAGAA
AAAGCTACAAGGTATATTGAGTCAGAGTCAAGATAAATCACTTCGGAGAATTTCAGAATTAAGA
GAGGAGCTGCAAATGGACCAGCAAGCAAAGAGACACCTGCAGGAGGAGTTTGACGCCTGTGTGG
AGGAGAAGGACCAGTACATCAGTGTTCTCCAGACTCAGGTTTCTCTTCTAAAGCAACGATTACA
GAATGGCCCAATGAGTGTTGATGTTCCAAAACCACTCCCTCCAGTGGAGCTCCAGGCAGAAGCG
CACAGTGACATGGAGAACCCTGCTGATGCTGCTTCACCGTTTGTAGGAGGTGGGACGTCTGCTA
AAACCCTGGAGATGCTCCAGCAGAGAGTGAAACGTCAGGAGAATCTGCTTCAGCGCTGTAAGGA
GACAATCGGGTCCCATAAGGAGCAGTGCGCACTGCTGCTGAGCGAGAAGGAGGCACTGCAGGAG
CAGTTGGAGGAAAGGCTGCAGGAGCTGGAGAAGATGAAGGAGCTTCATATGGCTGAGAAGACTA
AACTTATCACTCAGTTGCGTGATGCAAAGAACTTAATTGAACAGCTTGAACAAGATAAGGGAAT
GGTAATAACAGAGGCGAAGCGGCAAATGCTTGAGACCCTGGAACTGAAAGACGACGAAATTGCC
CAGCTTCGTAGTCATATACAGCGGATGACTACCCAGGGAGAGGAACTGCGGGAGCAGAAGGAAA
AGTCTGAAAGAGCTGCTTTTGAGGAACTCGAAAAAGCCTTGAGTACAGCCCAAAAAACTGAAGA
CGCACAGAGAAGAATGAAGGTGGAGATGGATGAGCAGATAAAGGCTGTTGAGAGAGCGGGCGAG
GAGGAGCGCCTCCGCCTTCAGCACGAACTCAGTCGGGTGAGGCAGGAGGCTGTCAGCATGGCGA
AAAAGAACTCAGAGCAGCGCGCTGACCTTCAGAAGCTGCATGCGGAGCAGTTGGCCAGCAAAGA
GCAGGAGCTGAGCCAGAAGCTGGAGAGCCGGGAGAGGGAGCTGCAGGAGCAGATGAGGATGGCC
CTCGAAAAGAGTCGATCAGAATATTTGAAGCTCACCCAAGAAAAAGAGCAGCAAGAATCCTTGG
CTTTAGAGGAGTTAGAGCTGCAGAAAAAAGCCATACTTACAGAGAGTGAAAATAAACTGCAGGG
ACTTAGGCAAGAAGCAGAGGTGCACCGAACCAGAATTCGTGAGTTGGAAACGTCTTTGGAAAAA
AGCTTACAAGAAAGCAGAACTCAGTCGGAGCGCTTGGCTGTTCATCTGGAAGCTGAGAAGAGCA
AGCACAAAACAGAGCTCACGGCCCTGGCGGAGAAGCACAGGACAGAACTGGAGGGCCTCCAGCA
GCAGCAGCACAGCCTGTGGACCGAGAGACTCCAGAACCTCTCGCAGCAGCATCAGGCTGCTGTG
GAGGAGCTCAGAGAGAAGCATCAGCAAGAAAAGGATGCATTACTGAAGGAGAAGGAGAGTCTCT
TCCAGGCCCACATACAAGACATGAATGAAAAGACCTTGGAGAAGCTCGACAAGAAGCAAATGGA
ACTGGAATCTGTGTCTTCTGAGCTGTCAGAAGCACTGAAAGCCCGGGACCAGCTTGCAGAGGAG
CTTTCTGTCCTAAGGGGGGACGCAGATCAAATGAAGCAGGCTTTAGAGGCCGAGCTGCAGGAGC
AAAGGCGTCACCACCAGCGTGAGGTTGACAGCATCAGTGGGCAACAAGAAATAATCGTCCGCAG
AACCGAGAAGGCACTGAAAGATGAGATCAGTCAGCTGGGGGGGCTCCTGAAGGAGAAGGACGAG
CACCTCCAGGAGCGTCAGGCCCAGGTACACAATCTTGAAGCTTGTCTTCAGAAGTCTGCTGAGG
AGCTCCAGCAGGCCTTGGCCAAGCTGGACCTCCTCCAGGCTCAGCAGAGCACCACACATGCGCA
GACAGGCGCATATGAGGAGCAGCTGGCCCAAATGCAGCAAAAGGTGTCGGACCTGGAAACAGAG
AAGAACCTTCTGACCAAGCAGGTGGTTGAAGTGGAAACACAGAAGAAGCGTGTGTGTGTGGAAT
TGGACGCTCAGAGAGCTCAGGTCCAGCAGCTCGAGAGACAGAGGAGTGAACTGGAGGACAAGGT
CAAATCCTTAGCCCAGCTCCAGGAGTCTCAGCTCAAGAACAGCCATGTGGAGAAAGAGCAAGCA
CAGCAGATCCTGACGGAAAAGGAAAATGTCATTTTACAGATGCGAGAAGAACAGGCCAAGGAAA
TCGAGATCCTCAAACAGAAATTGTTTTCTAAAGAAGAGAGCATTAGTATTTTACACGAGGAATA
TGAAACCAAATTTAAAAATCAGGAAAAAAGAATGGAAAAAATTAAGCAGAAAGCAAAAGAAATG
CAAGAAATGAAGAAAAAGTTGTTGGATCAGGAAGCCAAGCTTAAAAAAGAGCTTGAAAATACTG
TCCTAGAGCTTAGTCAGAAAGAGAAGCAGTTCAATGCCAAAATCCTGGAAATGGCACAGGCTAA
CTCGGCTGGAATTAGCGACACGGTGTCGAGACTAGAGGAGAACCAGAGGCAGCAGATAGAAAGC
CTGACCGGGGCTCATCAGCGAGAACTGGATGATCTCATAGAGTCCTGGGAAAAGAAACTCAGTC
AGCAGGCTGAAGAGCTTCGGGACCAGCATGAGAAGCTGATAGAGGAGAAGGAGCAGGAGCTTGG
GGAGCTGAAGCAGAAGGTCCTCACAGTCCAGTCTGAAAAAGAGGAGGTGACTCAGGAAGTGGCG
CGCCTGACAGAGGCAGTCACTGGGCAGGACGTGACCCTAGCTGGCCTGCAGGGGCAGCTGGAGC
AGAAGTCTGCTGCCGTCCTCGCTCTTTCAGACAGTCACGCTCAGTTGCAGTCACAAGTGGAAAA
GCTGGAAGTTGATTTGGGTTGTGCTCTGAATGAAAAGCTTTCTCTTCAAGAGGAGCTGGCTGAG
CTGAAAATGCTGGCAGAGAGGGAGAAGCTCAGGGTCTCTGAGCTGACTGGCAAGGTGCAGGCTG
CAGAGGAGGAGCTCCAGAGCTGTAAGTCCTTACATGAGGTCAGCAGGAAGAGCTTGGAGGACAA
AAGCTTGAACCTCAGAACCTTGCTTGAGGAGCTAGCATCTCAGCTAGACCGTCACTGTGAGAGA
ACTAAAGCTTTGTTAGAAGCCAAAACAAATGAACTAGTCTGCACCAGCCGGGACAAAGCTGACG
CTATTCTCGCCAGGCTGTCCCGCTGCCAGCGGCACACAGCCACAGTTGGGGAAGCCCTGCTCAG
GAGAATGGGCCAAGTTTCTGAATTAGAAGCACAACTTACACAGTTGACAGAGGAGCAGTGTACA
CTAAAGAACTCTTTTCAGCAAGTTACTAATCAATTGGAAGAAAAAGAAAATCAGATTAAGACCA
TGAAGGCCGATATGGAAGGTCTTATCGCAGAAAAAGAAGCCTTACAGCAAGAAGGAGGTCAGCA
GCAGCAGGTGGCCTCTGAGAAGGAGTCGTGTATCACACAGTTGAAGAAGGAGTTGTCAGAGAAC
ATCAATGCTGTCACACTACTGAGAGAGGAACTCTCCGAGAAGAAGTCTGAGATCGCCAGTCTTA
GCAAGCAGCTAAGTGACGTCAGTGCTCAGCTGGAGAACAGCATCAGCCCGAGCGACAAGGCCGA
GGCCATCTCTGCACTGAGCAAGCAGCATGAGGAACAAGAGCTGCAGCTGCAAGCTCAGCTTCGG
GAGCTGTCTTCAAAAGTCGATGCTCTGAGTAAGGAGAAAATGTCTGCCCTGGAGCAGGTAGATC
ATTGGTCCAACAAGTTCTCAGAGTGGAAGAAGAAAGCACAGCCCAGATTTGCACAGTACCAAAG
CACGATTAAAGACCTGCAGACACAGCTTGACCTAAAAGCCAAAGAAGCTGGTGAGAAGGATGAG
CAGATACGCTTGTTGAAGGAAGACCTTGATCAGCAGAATGAAAGATTTGAAAGTTTAAAGGGCG
AGATGGAGAAAAAGGAGTGTGATCTAGAGACTGAGTTAAAGACTCGGACAGCCAGGGTCGTTGA
ATTAGAAGACTGTATTACTCAGAGGAAAAAAGAAGTAGAGTCCCTAAATGAAGCCCTCAGGAAT
TGCAGCCAGCAGAGGGACACTGAGCACAGTGGCCTGGTTCAGACACTGCAGCGCCTGGAAGAGC
TGGGGCAAGAGAAAGACAACAAGGTCAGGGAGGCTGAGGAGACGGTCCTGGGGCTGCGGGAGCG
CGTGTCCTCGCTGGAAGCTGAACTCCGCGTCGTGAGGAAGGAACTAGACGACGTGAATTCAAGT
GTGAAAAGCAGAGACGGGGAGCTGAAAGCGTTAGAAGACAAACTTGAGTTAGAAAGTGCTGCAA
AAGTGGAGCTGAAGAGGAAGGCGGAGCAGAAGCTCGCCGCCATCCGGAAGCAGCTCTTGTCTCA
GATGGAGGCGAAGGTGCAGCAGTGTGCGAAGGACACAGAGAGCCAGCTGAGTGAGCTGCGTGCA
AAGTTACAGGGCAGAGAAAAGCAAATCCACATCCTAGAAGGAAAACTTAAAAACCTAGCAAGTT
CCCCACACCCAGAAAGAGCAGTTGTGTCAGGATCCATGGGAAACGTGGCAGCGTCTCCTGAGCA
AGAGGCAGCAGATTCCCAAGAGTGCACACAGAAGGCATGCAAGGAGCGAGTCTGCGTGCTGCAG
AGAAGTGTGATTGAGAAAGAGAGGCTGACACAGAGGCTGCAGCAGGGCGAACGGGAGGCGGCGC
CATCGCAGTCTGAGGTTCGGCACAGGGAGCTCTCCGTGAAGTTAGATCGCGCCAGAGCCAAGCA
GCTCGAGGATCAGGTTTTGATAGGATGTCTTCAAGAAGAACTGGAAGAAAGGATGAAGTGTCCC
TCAATTCTGTCCCAGCCCATGGGAGAAGAAACCGGTAAAAACAACACAGGGCTGAAGCAGAATT
GGGCAAGTATGGTTGACACTGTCCAGAAAACGCTCCAGGAAAAGGAGCTGAGCTGCCAGGCCCT
GGAGCGAAGGGTGAGAGAGCTGGAGTCAGACTTAATAACAGAGAGGGACGCCCATAGGCTTGAA
GTGGAAAAGTTGACCTTAAAATATGAAAAATCACAATCTCCACAGCAAGAGATGGGTGGGAAAA
ATACGTCTGTGGAAATTTTGGAAGACAGGCCTGAGGAAAATTCCAAATCCCATGTGATAGAATC
GAAACTGGGGACCCCCATGGACGGCCGGCACAGTGACCTGGAGTCGAAGTTAGCAGGGTCAGAG
CGGGAAAAGCAGAAGCTGAGCAAGGAGGTGGGGAGGCTGCAGAAAGATCTCCGAGCTCTGAGAA
AGGAGCATCAGCAGGAGCTGGACATCCTGAGGAAGGAATGTGAGCAGGAAGCAGAGGAAAAGCT
CAAACAGGAGCAAGAGGATCTTGAGTTGAAGCACAGCTCCACACTGAAGCAGCTGATGCGGGAG
TTTAACACCCAGCTGGCACAGAAGGAGCAGGAGCTGGAGAGAACTGTCCAGGAGACCATCGATA
AGGCCCAAGAGGTGGAAGCTGAACTTCTGCAAAGCCACCAAGAAGAGACACAGCAGCTGCATAG
AAAGATTGCGGAGAAAGAGGATGATCTGCAAAGGACGGCCAGAAGATACGAGGAGATACTTGAT
GCCCGGGAAGAAGAAATGACTGCAAAAGTAATGGACCTGCAGACCCGGCTGGAGGAGCTCCAGA
AGAAATACGAGCACAGGCTAGAGCAGGAGGAGAGCGCCAAGGACAGTGTTACAGTTCTGGAGCT
ACAGACACAGCTGGCCCAGAAGACCACCCTGATCAGCGATTCCAAGCTGAAGGAGCAGGAGTTG
AGAGAGCAGGTCCATAATTTAGAAGACCGTTTGAAAAGCTATGAGAAGAGTGTATGTGCAGCAG
CTGTGGGGGCACCTTACAGAGGAGGCAATTTGTACCACACTGAGGTCTCACTCTTCGGAGAACC
TACTGAGTTCGAATATTTGCGAAAAGTGCTGTTTGAATATATGATGGGTCGAGAGACCAAGACC
ATGGCCAAAGTTATAACTACTGTCCTAAGATTCCCTGATGATCAAGCTCAGAAAATTTTGGAAA
GAGAAGACGCTCGGCTGATGTTCACCTCACCTCGCAGTGGCATCTTCTGATAACCGTCAGTCTG
TGCTTAGTAAGCATGTGTCATGGCTCCGAACCTCATCTTGAAGAAATGGGGAGACTGAGGCTGG
GCATCTGCTGCTGAGGAAGCTGCCCTCCCACATGTGGTGTTTGCGGAGAATGGCGCTGTCATCA
TGGGCCATTCGTGTAGCTTGAAGACACATGCTACCCTGGCCACAGATACATAGCTTTTGAAGCA
GACATTCTTGGTGGGGAAATGGTGATAGTTTTGTTCTTTTTCATTCAGTTTTTTTCTGGGAAGT
TCTCTGTGGT

hide sequence

RefSeq Acc Id:

XM_063266012 ⟹ XP_063122082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266013 ⟹ XP_063122083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266014 ⟹ XP_063122084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266015 ⟹ XP_063122085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,086,030 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266016 ⟹ XP_063122086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,157,351 (+)	NCBI

RefSeq Acc Id:

XM_063266017 ⟹ XP_063122087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266019 ⟹ XP_063122089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266020 ⟹ XP_063122090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266021 ⟹ XP_063122091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266022 ⟹ XP_063122092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266023 ⟹ XP_063122093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266024 ⟹ XP_063122094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,086,030 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266025 ⟹ XP_063122095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266026 ⟹ XP_063122096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266027 ⟹ XP_063122097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,086,030 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266028 ⟹ XP_063122098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

RefSeq Acc Id:

XM_063266029 ⟹ XP_063122099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	127,085,830 - 127,163,227 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178009	(Get FASTA)	NCBI Sequence Viewer
	NP_001416137	(Get FASTA)	NCBI Sequence Viewer
	XP_063122082	(Get FASTA)	NCBI Sequence Viewer
	XP_063122083	(Get FASTA)	NCBI Sequence Viewer
	XP_063122084	(Get FASTA)	NCBI Sequence Viewer
	XP_063122085	(Get FASTA)	NCBI Sequence Viewer
	XP_063122086	(Get FASTA)	NCBI Sequence Viewer
	XP_063122087	(Get FASTA)	NCBI Sequence Viewer
	XP_063122089	(Get FASTA)	NCBI Sequence Viewer
	XP_063122090	(Get FASTA)	NCBI Sequence Viewer
	XP_063122091	(Get FASTA)	NCBI Sequence Viewer
	XP_063122092	(Get FASTA)	NCBI Sequence Viewer
	XP_063122093	(Get FASTA)	NCBI Sequence Viewer
	XP_063122094	(Get FASTA)	NCBI Sequence Viewer
	XP_063122095	(Get FASTA)	NCBI Sequence Viewer
	XP_063122096	(Get FASTA)	NCBI Sequence Viewer
	XP_063122097	(Get FASTA)	NCBI Sequence Viewer
	XP_063122098	(Get FASTA)	NCBI Sequence Viewer
	XP_063122099	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85124	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000098962
	ENSRNOP00000099161
	ENSRNOP00000103026
	ENSRNOP00000112165
GenBank Protein	Q5U4E6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001178009 ⟸ NM_001191080

- Sequence:

show sequence

MFKKLKQKISEEQQQLQQALAPAQASSSSSTPTRTRSRTSSFTDQLDDATPNRESGDTQTFAQK
LQLRVPSMESLFRSPIKESLFRSSKESLVRTSSRESLNQVDLDCAVATFDPPSDMESEAEDAPW
SSDSLSREQLLQRLRRMERSLSSYRGKYSELVTAFQTLQREKKKLQGILSQSQDKSLRRISELR
EELQMDQQAKRHLQEEFDACVEEKDQYISVLQTQVSLLKQRLQNGPMSVDVPKPLPPVELQAEA
HSDMENPADAASPFVGGGTSAKTLEMLQQRVKRQENLLQRCKETIGSHKEQCALLLSEKEALQE
QLEERLQELEKMKELHMAEKTKLITQLRDAKNLIEQLEQDKGMVITEAKRQMLETLELKDDEIA
QLRSHIQRMTTQGEELREQKEKSERAAFEELEKALSTAQKTEDAQRRMKVEMDEQIKAVERAGE
EERLRLQHELSRVRQEAVSMAKKNSEQRADLQKLHAEQLASKEQELSQKLESRERELQEQMRMA
LEKSRSEYLKLTQEKEQQESLALEELELQKKAILTESENKLQGLRQEAEVHRTRIRELETSLEK
SLQESRTQSERLAVHLEAEKSKHKTELTALAEKHRTELEGLQQQQHSLWTERLQNLSQQHQAAV
EELREKHQQEKDALLKEKESLFQAHIQDMNEKTLEKLDKKQMELESVSSELSEALKARDQLAEE
LSVLRGDADQMKQALEAELQEQRRHHQREVDSISGQQEIIVRRTEKALKDEISQLGGLLKEKDE
HLQERQAQVHNLEACLQKSAEELQQALAKLDLLQAQQSTTHAQTGAYEEQLAQMQQKVSDLETE
KNLLTKQVVEVETQKKRVCVELDAQRAQVQQLERQRSELEDKVKSLAQLQESQLKNSHVEKEQA
QQILTEKENVILQMREEQAKEIEILKQKLFSKEESISILHEEYETKFKNQEKRMEKIKQKAKEM
QEMKKKLLDQEAKLKKELENTVLELSQKEKQFNAKILEMAQANSAGISDTVSRLEENQRQQIES
LTGAHQRELDDLIESWEKKLSQQAEELRDQHEKLIEEKEQELGELKQKVLTVQSEKEEVTQEVA
RLTEAVTGQDVTLAGLQGQLEQKSAAVLALSDSHAQLQSQVEKLEVDLGCALNEKLSLQEELAE
LKMLAEREKLRVSELTGKVQAAEEELQSCKSLHEVSRKSLEDKSLNLRTLLEELASQLDRHCER
TKALLEAKTNELVCTSRDKADAILARLSRCQRHTATVGEALLRRMGQVSELEAQLTQLTEEQCT
LKNSFQQVTNQLEEKENQIKTMKADMEGLIAEKEALQQEGGQQQQVASEKESCITQLKKELSEN
INAVTLLREELSEKKSEIASLSKQLSDVSAQLENSISPSDKAEAISALSKQHEEQELQLQAQLR
ELSSKVDALSKEKMSALEQVDHWSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDLKAKEAGEKDE
QIRLLKEDLDQQNERFESLKGEMEKKECDLETELKTRTARVVELEDCITQRKKEVESLNEALRN
CSQQRDTEHSGLVQTLQRLEELGQEKDNKVREAEETVLGLRERVSSLEAELRVVRKELDDVNSS
VKSRDGELKALEDKLELESAAKVELKRKAEQKLAAIRKQLLSQMEAKVQQCAKDTESQLSELRA
KLQGREKQIHILEGKLKNLASSPHPERAVVSGSMGNVAASPEQEAADSQECTQKACKERVCVLQ
RSVIEKERLTQRLQQGEREAAPSQSEVRHRELSVKLDRARAKQLEDQVLIGCLQEELEERMKCP
SILSQPMGEETGKNNTGLKQNWASMVDTVQKTLQEKELSCQALERRVRELESDLITERDAHRLE
VEKLTLKYEKSQSPQQEMGGKNTSVEILEDRPEENSKSHVIESKLGTPMDGRHSDLESKLAGSE
REKQKLSKEVGRLQKDLRALRKEHQQELDILRKECEQEAEEKLKQEQEDLELKHSSTLKQLMRE
FNTQLAQKEQELERTVQETIDKAQEVEAELLQSHQEETQQLHRKIAEKEDDLQRTARRYEEILD
AREEEMTAKVMDLQTRLEELQKKYEHRLEQEESAKDSVTVLELQTQLAQKTTLISDSKLKEQEL
REQVHNLEDRLKSYEKSVCAAAVGAPYRGGNLYHTEVSLFGEPTEFEYLRKVLFEYMMGRETKT
MAKVITTVLRFPDDQAQKILEREDARLMFTSPRSGIF

hide sequence

Ensembl Acc Id:

ENSRNOP00000075007 ⟸ ENSRNOT00000087753

Ensembl Acc Id:

ENSRNOP00000039533 ⟸ ENSRNOT00000051290

Ensembl Acc Id:

ENSRNOP00000069066 ⟸ ENSRNOT00000078625

RefSeq Acc Id:	XP_063122082 ⟸ XM_063266012
- Peptide Label:	isoform X1
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122083 ⟸ XM_063266013
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063122091 ⟸ XM_063266021
- Peptide Label:	isoform X9
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122084 ⟸ XM_063266014
- Peptide Label:	isoform X3
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122087 ⟸ XM_063266017
- Peptide Label:	isoform X6
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122092 ⟸ XM_063266022
- Peptide Label:	isoform X10
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122098 ⟸ XM_063266028
- Peptide Label:	isoform X16
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122089 ⟸ XM_063266019
- Peptide Label:	isoform X7
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122090 ⟸ XM_063266020
- Peptide Label:	isoform X8
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122093 ⟸ XM_063266023
- Peptide Label:	isoform X11
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122095 ⟸ XM_063266025
- Peptide Label:	isoform X13
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122096 ⟸ XM_063266026
- Peptide Label:	isoform X14
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122099 ⟸ XM_063266029
- Peptide Label:	isoform X17
- UniProtKB:	A6I3U3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122086 ⟸ XM_063266016
- Peptide Label:	isoform X5
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122085 ⟸ XM_063266015
- Peptide Label:	isoform X4
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122094 ⟸ XM_063266024
- Peptide Label:	isoform X12
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063122097 ⟸ XM_063266027
- Peptide Label:	isoform X15
- UniProtKB:	Q5U4E6 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000112165 ⟸ ENSRNOT00000158028

Ensembl Acc Id:

ENSRNOP00000111701 ⟸ ENSRNOT00000151163

Ensembl Acc Id:

ENSRNOP00000103026 ⟸ ENSRNOT00000136370

Ensembl Acc Id:

ENSRNOP00000098962 ⟸ ENSRNOT00000154270

Ensembl Acc Id:

ENSRNOP00000099161 ⟸ ENSRNOT00000170912

Protein Domains

GRIP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U4E6-F1-model_v2	AlphaFold	Q5U4E6	1-2259	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696364

Promoter ID:

EPDNEW_R6887

Type:

multiple initiation site

Name:

Golga4_1

Description:

golgin A4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	127,171,672 - 127,171,732	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591925	AgrOrtholog
BioCyc Gene	G2FUF-28817	BioCyc
Ensembl Genes	ENSRNOG00000029910	Ensembl
	ENSRNOG00000085953	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000136370	ENTREZGENE
	ENSRNOT00000154270	ENTREZGENE
	ENSRNOT00000158028	ENTREZGENE
	ENSRNOT00000170912	ENTREZGENE
Gene3D-CATH	GRIP domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123209	IMAGE-MGC_LOAD
InterPro	GRIP_dom	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105866	IMAGE-MGC_LOAD
NCBI Gene	501069	ENTREZGENE
PANTHER	GOLGIN	UniProtKB/Swiss-Prot
	GOLGIN SUBFAMILY A MEMBER 4	UniProtKB/Swiss-Prot
Pfam	GRIP	UniProtKB/Swiss-Prot
PhenoGen	Golga4	PhenoGen
PROSITE	GRIP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000029910	RatGTEx
	ENSRNOG00000085953	RatGTEx
SMART	Grip	UniProtKB/Swiss-Prot
Superfamily-SCOP	GRIP domain	UniProtKB/Swiss-Prot
UniProt	A6I3U3	ENTREZGENE, UniProtKB/TrEMBL
	GOGA4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Golga4	golgin A4	Golga4	golgi autoantigen, golgin subfamily a, 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Golga4	golgi autoantigen, golgin subfamily a, 4	LOC501069	similar to golgi autoantigen golgin subtype a4; tGolgin-1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC501069	similar to golgi autoantigen golgin subtype a4; tGolgin-1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD