Fthl17c (ferritin, heavy polypeptide-like 17, member C) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fthl17c (ferritin, heavy polypeptide-like 17, member C) Rattus norvegicus
Analyze
Symbol: Fthl17c
Name: ferritin, heavy polypeptide-like 17, member C
RGD ID: 1591840
Description: INVOLVED IN iron ion transport (inferred); INTERACTS WITH crocidolite asbestos (ortholog)
Type: protein-coding
Also known as: ferritin heavy polypeptide-like 17; LOC679157; similar to ferritin, heavy polypeptide-like 17
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 EnsemblX14,782,958 - 14,783,792 (-)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.4X25,952,906 - 25,953,436 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX172,741 - 173,962 (+)NCBICelera
Cytogenetic MapX NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References


Genomics

Comparative Map Data
Fthl17c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 EnsemblX14,782,958 - 14,783,792 (-)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.4X25,952,906 - 25,953,436 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX172,741 - 173,962 (+)NCBICelera
Cytogenetic MapX NCBI
FTH1P19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX37,492,021 - 37,492,548 (+)EnsemblGRCh38hg38GRCh38
GRCh38X37,491,957 - 37,492,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X37,351,210 - 37,351,973 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,235,296 - 37,249,900 (+)NCBINCBI36hg18NCBI36
CeleraX41,488,892 - 41,489,649 (+)NCBI
Cytogenetic MapXp21.1NCBI
HuRefX35,097,492 - 35,098,249 (+)NCBIHuRef
CHM1_1X37,382,285 - 37,383,042 (+)NCBICHM1_1
Fthl17c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X8,841,957 - 8,842,798 (-)NCBIGRCm39mm39
GRCm39 EnsemblX8,841,949 - 8,842,798 (-)Ensembl
GRCm38X8,975,718 - 8,976,559 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX8,975,710 - 8,976,559 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X8,552,836 - 8,553,685 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X8,132,677 - 8,133,533 (-)NCBImm8
CeleraX6,073,160 - 6,074,009 (+)NCBICelera
Cytogenetic MapXA1.1NCBI

Position Markers
G65202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X13,841,655 - 13,841,947 (-)MAPPER
mRatBN7.2X13,802,697 - 13,802,989 (+)MAPPER
Rnor_6.0X14,783,239 - 14,783,530NCBIRnor6.0
Rnor_5.0X15,568,994 - 15,569,285UniSTSRnor5.0
RGSC_v3.4X25,953,028 - 25,953,319UniSTSRGSC3.4
RGSC_v3.4X25,991,986 - 25,992,277UniSTSRGSC3.4
CeleraX173,374 - 173,665UniSTS
CeleraX134,168 - 134,459UniSTS
Cytogenetic MapXq13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12
Low 5
Below cutoff 2 2 3 7 10 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001054953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_001054953   ⟹   XP_001054953
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX172,741 - 173,962 (+)NCBI
Sequence:
Protein Sequences
Reference Sequences
RefSeq Acc Id: XP_001054953   ⟸   XM_001054953
- Sequence:
Protein Domains
Ferritin-like diiron

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000059740 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000071832 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087609 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.10 UniProtKB/TrEMBL
InterPro Ferritin-like UniProtKB/TrEMBL
  Ferritin/RR-like UniProtKB/TrEMBL
  Ferritin_CS UniProtKB/TrEMBL
  Ferritin_Dps UniProtKB/TrEMBL
  Ferritin_N UniProtKB/TrEMBL
  Ferritin_rel UniProtKB/TrEMBL
KEGG Report rno:679157 UniProtKB/TrEMBL
  rno:691895 UniProtKB/TrEMBL
NCBI Gene 679157 ENTREZGENE
PANTHER Ferritin_N UniProtKB/TrEMBL
Pfam Ferritin UniProtKB/TrEMBL
PhenoGen Fthl17c PhenoGen
PROSITE FERRITIN_2 UniProtKB/TrEMBL
  FERRITIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP Ferritin/RR_like UniProtKB/TrEMBL
UniProt A0A0G2K1G6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Fthl17c  ferritin, heavy polypeptide-like 17, member C  LOC679157  similar to ferritin, heavy polypeptide-like 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC679157  similar to ferritin, heavy polypeptide-like 17      Symbol and Name status set to provisional 70820 PROVISIONAL