Gene: LOC685680 (similar to TPA-induced transmembrane protein) Rattus norvegicus
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Symbol: LOC685680
Name: similar to TPA-induced transmembrane protein
Description: FOUND IN integral component of membrane (inferred); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : C3orf52 (chromosome 3 open reading frame 52)  HGNC  Alliance
Mus musculus (house mouse) : BC016579 (cDNA sequence, BC016579)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102019416 (chromosome unknown open reading frame, human C3orf52)
Pan paniscus (bonobo/pygmy chimpanzee) : C3H3orf52 (chromosome 3 C3orf52 homolog)
Canis lupus familiaris (dog) : C33H3orf52 (chromosome 33 C3orf52 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : CUNH3orf52 (chromosome unknown C3orf52 homolog)
Sus scrofa (pig) : C13H3orf52 (chromosome 13 C3orf52 homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01160,138,729 - 60,165,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01164,240,482 - 64,266,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,654,125 - 56,680,917 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1154,689,488 - 54,716,157 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on LOC685680
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1591333
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE