Dnajb2 (DnaJ heat shock protein family (Hsp40) member B2)

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Gene: Dnajb2 (DnaJ heat shock protein family (Hsp40) member B2) Rattus norvegicus

Analyze

Symbol:

Dnajb2

Name:

DnaJ heat shock protein family (Hsp40) member B2

RGD ID:

1591035

Description:

Predicted to enable several functions, including Hsp70 protein binding activity; modification-dependent protein binding activity; and proteasome binding activity. Predicted to be involved in several processes, including protein refolding; regulation of protein metabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be located in several cellular components, including endoplasmic reticulum membrane; nuclear membrane; and perinuclear region of cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in distal spinal muscular atrophy type 5. Orthologous to human DNAJB2 (DnaJ heat shock protein family (Hsp40) member B2); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DnaJ (Hsp40) homolog, subfamily B, member 2; dnaJ homolog subfamily B member 2; hypothetical protein LOC689593; LOC689593; similar to DnaJ (Hsp40) homolog, subfamily B, member 10 isoform 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,731,065 - 76,739,277 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	85,175,912 - 85,184,076 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,304,803 - 90,312,970 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	88,691,018 - 88,699,186 (+)	NCBI	Rnor_WKY
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,436,458 - 82,444,668 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,517,647 - 74,525,857 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	74,301,465 - 74,309,675 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

Charcot-Marie-Tooth disease (ISO)

Charcot-Marie-Tooth disease axonal type 2T (ISO)

Charcot-Marie-Tooth disease type 2 (ISO)

Charcot-Marie-Tooth disease X-linked dominant 1 (ISO)

distal spinal muscular atrophy type 5 (ISO)

genetic disease (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

1H-pyrazole (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroacetaldehyde (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

diazinon (ISO)

dinophysistoxin 1 (ISO)

dioxygen (ISO)

diuron (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrazine (ISO)

ibuprofen (ISO)

ifosfamide (ISO)

L-serine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

quercetin (ISO)

sarin (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone-mediated protein folding (IBA,ISO)

negative regulation of cell growth (ISO,ISS)

negative regulation of cell population proliferation (ISO,ISS)

negative regulation of inclusion body assembly (ISO)

negative regulation of protein binding (ISO)

negative regulation of protein deubiquitination (ISO)

positive regulation of ATP-dependent activity (ISO)

positive regulation of proteasomal ubiquitin-dependent protein catabolic process (IBA,ISO)

positive regulation of protein ubiquitination (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (ISO)

protein refolding (IBA,ISO)

regulation of chaperone-mediated protein folding (ISO)

regulation of protein localization (ISO)

regulation of protein ubiquitination (ISO)

ubiquitin-dependent ERAD pathway (IBA,ISO)

Cellular Component

cytoplasm (ISO)

cytosol (IBA,ISO)

endoplasmic reticulum membrane (ISO)

inclusion body (ISO)

nuclear membrane (ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

proteasome complex (ISO)

Molecular Function

ATPase activator activity (IBA,ISO)

Hsp70 protein binding (IBA,ISO)

polyubiquitin modification-dependent protein binding (ISO)

proteasome binding (ISO)

protein binding (ISO)

protein-folding chaperone binding (IBA,ISO)

ubiquitin binding (ISO)

ubiquitin protein ligase binding (ISO)

ubiquitin-dependent protein binding (ISO)

unfolded protein binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7957263	PMID:9553041	PMID:12477932	PMID:12754272	PMID:15936278	PMID:16604191	PMID:20889486	PMID:21231916	PMID:21625540	PMID:22219199	PMID:22871113	PMID:24023695
PMID:28031292

Genomics

Comparative Map Data

Dnajb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,731,065 - 76,739,277 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	85,175,912 - 85,184,076 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,304,803 - 90,312,970 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	88,691,018 - 88,699,186 (+)	NCBI	Rnor_WKY
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,436,458 - 82,444,668 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,517,647 - 74,525,857 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	74,301,465 - 74,309,675 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

DNAJB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,279,366 - 219,286,895 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	219,279,342 - 219,286,898 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	220,144,088 - 220,151,617 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	219,852,284 - 219,859,866 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	219,969,602 - 219,977,127	NCBI
Celera	2	213,913,742 - 213,921,325 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,997,126 - 212,004,708 (+)	NCBI		HuRef
CHM1_1	2	220,149,887 - 220,157,470 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	219,764,122 - 219,771,651 (+)	NCBI		T2T-CHM13v2.0

Dnajb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,213,039 - 75,222,336 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,213,050 - 75,222,336 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	75,236,395 - 75,245,692 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	75,236,406 - 75,245,692 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	75,232,998 - 75,242,267 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	75,119,635 - 75,128,838 (+)	NCBI		MGSCv36	mm8
Celera	1	75,727,318 - 75,736,588 (+)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI

Dnajb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,148,070 - 14,154,670 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	14,147,286 - 14,154,396 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	121,924,702 - 121,932,264 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,536,846 - 106,544,430 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	225,127,967 - 225,135,556 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	225,127,967 - 225,135,556 (+)	Ensembl	panpan1.1		panPan2

DNAJB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,826,496 - 25,834,011 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,827,713 - 25,833,144 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,652,500 - 26,659,869 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,841,856 - 25,849,227 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,841,844 - 25,849,222 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	25,746,217 - 25,753,596 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,681,582 - 25,688,947 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,702,255 - 25,709,637 (+)	NCBI		UU_Cfam_GSD_1.0

Dnajb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,347,122 - 175,354,398 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,689,507 - 1,698,954 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936569	1,689,926 - 1,697,179 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,319,982 - 121,335,991 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	121,319,897 - 121,335,927 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	134,355,341 - 134,363,197 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	105,185,987 - 105,193,749 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	105,186,608 - 105,194,574 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	94,203,755 - 94,211,383 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,730,386 - 5,738,459 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	5,730,553 - 5,737,668 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dnajb2
21 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	384
Count of miRNA genes:	213
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000026467
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	76650629	76771824	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	7	10	74	35	41	11	7
Low							1	1					1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_357089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026467 ⟹ ENSRNOP00000026467

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,065 - 76,739,277 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,436,458 - 82,444,668 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081958 ⟹ ENSRNOP00000074369

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,097 - 76,739,273 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,436,516 - 82,444,668 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095829 ⟹ ENSRNOP00000085337

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,426 - 76,739,259 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098165 ⟹ ENSRNOP00000076642

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,065 - 76,739,277 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102574 ⟹ ENSRNOP00000092193

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,534 - 76,739,277 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111890 ⟹ ENSRNOP00000086434

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	76,731,276 - 76,739,099 (+)	Ensembl

RefSeq Acc Id:

NM_001109541 ⟹ NP_001103011

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,065 - 76,739,277 (+)	NCBI
Rnor_6.0	9	82,436,458 - 82,444,668 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI
RGSC_v3.4	9	74,517,647 - 74,525,857 (+)	RGD
Celera	9	74,301,465 - 74,309,675 (+)	RGD

Sequence:

show sequence

CTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGACGCATG
CTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGGTGCTA
GGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGCCGCCT
GACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTCCCCTG
ATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCGGATAA
TAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTGACAGA
AGTGGTCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCGTAGCC
CTGAGGAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGATGACTT
GGGTGCCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTTTCTCT
TCCTCCTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGCTGGTG
CTTTCCGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAAT
CATGGAGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGTCAATC
AATGGTGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCCTTCAG
TCACCCCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGACAGCGA
CCTTTCTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGGCATCT
GGGCAGAAGCCAGCAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGTTCCAA
CAGGACAGCGCCCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTATGCTG
AGTGTAGAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCTTGGCC
TCTTAACTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGTGCAAT
GCACCTTGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAAGATGA
GCTTCTTGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCCATTTT
GTCCCTGGCAGGGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAGACCCA
GGTTGGAGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGGGCAGT
GGACTGAGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGAAGGCT
GCCTTGGCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTGCTTGA
ATGGCTTTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTCCATGA
GCCACCTGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCTGTGAC
CGGCCTCTGTAACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGACTGTGG
GAAAATGGAGGCAAATAAAGCTGAGTTTTGAG

hide sequence

RefSeq Acc Id:

XM_006245276 ⟹ XP_006245338

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGAC
GCATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGG
TGCTAGGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGC
CGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTC
CCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCG
GATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTG
ACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGGGAAGGGCTGACGGGGGCAGGAAGTGG
TCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCGTAGCCCTGAG
GAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGATGACTTGGGTG
CCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTTTCTCTTCCTC
CTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGCTGGTGCTTTC
CGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGG
AGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGTCAATCAATGG
TGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCCTTCAGTCACC
CCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGACAGCGACCTTT
CTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGGCATCTGGGCA
GAAGCCAGCAGGTGGGCGGGGGGCACCGCAACGACAGCATGGGCAGCCCAAGGCCCAGCACCAA
GACCCTGATGTGGGGGGCCTGCATAAGGGGGCAAGGGGCGAGGCAGCCAAAGTCAGCCCATCCT
CAGAGGAGAAGGCCTCTCGCTGCCTCATTCTCTGAGAACCAGGCCGATGCTGGACTGACGCAGG
TCCCAACTCAGAGTCCAGGTCACTGTCTGGAGTGCAGAATAGTGTGGCCTGACTTGCAGGATTC
CAAACTGTCCCTCCACAAGTTTCCCTCCCGTGTCCACCTGTATTGTGGACAGATTTGTTGTACT
CTGTCCAGGGCTGACAGGTCCCTGGGTAAAGCCCAGATTGGGGGGTGGGGGGACCAGTGCCTGT
GGAGCTCAGAGGCACTGGTTGGATCAGACACTGCTAAAGGACATTAGTGGGTTTGGGGTGCCCA
AGTCTTTTCCTGCCGTTTATGTTGCTGATGCTGTCGAGGAAGGAGGACTTGGCCTGGCATGCTC
TGAGCTTGAGCTTCCCCCAGGGAATAGCACAGGCCGAGGAGCCTCTGCTGTCCTTGGCCAGATG
CAGCCCTCCCGGTTTCTGTGTAGAACTGAGCTCTCACCCACTGTCTCGTTTCCCCTCTGGTGCT
GCCTTCCTCCCACTCCACTCCACTCCGCAACGCCCACCCTTCGGCTGCAACGCTTGCTTTCATT
GCTGCTTGGCTAGGTCTCCCTTCTCCTTCTCTTAGAAGCCCAGGAAGATGCTGGGGCCAGTGGG
TCCATAAGATCTTCTGGGGAGGCTAGCTAGGTAGGGTGGAAGCCTCTCAGCCCTCCAGAGTCTC
AACCAGAGTCAACTCCTCTTCCCTTCTTCTTGCTGCCTCAGCCTGCCCTGGCCATAGGACTAGG
CAGAGGTGAGGCTGGCTGTCCCTGGAGAGGTGGGATAGGGCCAGGGTGACCCAGAGGGAGGCCT
AGGTGGGGACTGTATTTGTACTGCCCACTCATCACACATCAGAGCTGAGGGGCTGGCCTAGGAG
TGCATGCTCAGCTCCATCCTCTTCTGCTTGCAGCTGACCCTCTCTCCTGTCACCCACCCCTGCT
CTCTCCCCAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGTTCCAACAGGAC
AGCGCCCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTATGCTGAGTGTA
GAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCTTGGCCTCTTAA
CTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGTGCAATGCACCT
TGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAAGATGAGCTTCT
TGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCCATTTTGTCCCT
GGCAGGGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAGACCCAGGTTGG
AGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGGGCAGTGGACTG
AGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGAAGGCTGCCTTG
GCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTGCTTGAATGGCT
TTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTCCATGAGCCACC
TGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCTGTGACCGGCCT
CTGTAACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGACTGTGGGAAAAT
GGAGGCAAATAAAGCTGAGTTTTGAGA

hide sequence

RefSeq Acc Id:

XM_006245279 ⟹ XP_006245341

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,067 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,454 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGACG
CATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGCC
TGGAGGAGGGCCGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCG
CGGAGTGCGTCCCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAG
ACAAGAACCCGGATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGA
AGTACTGTCTGACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGGGAAGGGCTGACGGGG
GCAGGAAGTGGTCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCC
GTAGCCCTGAGGAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGA
TGACTTGGGTGCCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACT
TTCTCTTCCTCCTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGG
CTGGTGCTTTCCGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACG
CAGAATCATGGAGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTG
TCAATCAATGGTGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGC
CTTCAGTCACCCCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGA
CAGCGACCTTTCTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAG
GCATCTGGGCAGAAGCCAGCAGGTGGGCGGGGGGCACCGCAACGACAGCATGGGCAGCCCAAGG
CCCAGCACCAAGACCCTGATGTGGGGGGCCTGCATAAGGGGGCAAGGGGCGAGGCAGCCAAAGT
CAGCCCATCCTCAGAGGAGAAGGCCTCTCGCTGCCTCATTCTCTGAGAACCAGGCCGATGCTGG
ACTGACGCAGGTCCCAACTCAGAGTCCAGGTCACTGTCTGGAGTGCAGAATAGTGTGGCCTGAC
TTGCAGGATTCCAAACTGTCCCTCCACAAGTTTCCCTCCCGTGTCCACCTGTATTGTGGACAGA
TTTGTTGTACTCTGTCCAGGGCTGACAGGTCCCTGGGTAAAGCCCAGATTGGGGGGTGGGGGGA
CCAGTGCCTGTGGAGCTCAGAGGCACTGGTTGGATCAGACACTGCTAAAGGACATTAGTGGGTT
TGGGGTGCCCAAGTCTTTTCCTGCCGTTTATGTTGCTGATGCTGTCGAGGAAGGAGGACTTGGC
CTGGCATGCTCTGAGCTTGAGCTTCCCCCAGGGAATAGCACAGGCCGAGGAGCCTCTGCTGTCC
TTGGCCAGATGCAGCCCTCCCGGTTTCTGTGTAGAACTGAGCTCTCACCCACTGTCTCGTTTCC
CCTCTGGTGCTGCCTTCCTCCCACTCCACTCCACTCCGCAACGCCCACCCTTCGGCTGCAACGC
TTGCTTTCATTGCTGCTTGGCTAGGTCTCCCTTCTCCTTCTCTTAGAAGCCCAGGAAGATGCTG
GGGCCAGTGGGTCCATAAGATCTTCTGGGGAGGCTAGCTAGGTAGGGTGGAAGCCTCTCAGCCC
TCCAGAGTCTCAACCAGAGTCAACTCCTCTTCCCTTCTTCTTGCTGCCTCAGCCTGCCCTGGCC
ATAGGACTAGGCAGAGGTGAGGCTGGCTGTCCCTGGAGAGGTGGGATAGGGCCAGGGTGACCCA
GAGGGAGGCCTAGGTGGGGACTGTATTTGTACTGCCCACTCATCACACATCAGAGCTGAGGGGC
TGGCCTAGGAGTGCATGCTCAGCTCCATCCTCTTCTGCTTGCAGCTGACCCTCTCTCCTGTCAC
CCACCCCTGCTCTCTCCCCAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGT
TCCAACAGGACAGCGCCCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTA
TGCTGAGTGTAGAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCT
TGGCCTCTTAACTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGT
GCAATGCACCTTGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAA
GATGAGCTTCTTGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCC
ATTTTGTCCCTGGCAGGGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAG
ACCCAGGTTGGAGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGG
GCAGTGGACTGAGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGA
AGGCTGCCTTGGCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTG
CTTGAATGGCTTTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTC
CATGAGCCACCTGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCT
GTGACCGGCCTCTGTAACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGAC
TGTGGGAAAATGGAGGCAAATAAAGCTGAGTTTTGAGA

hide sequence

RefSeq Acc Id:

XM_006245280 ⟹ XP_006245342

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGAC
GCATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGG
TGCTAGGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGC
CGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTC
CCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCG
GATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTG
ACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGGGAAGGGCTGACGGGGGCAGGAAGTGG
TCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCGTAGCCCTGAG
GAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGATGACTTGGGTG
CCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTTTCTCTTCCTC
CTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGCTGGTGCTTTC
CGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGG
AGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGTCAATCAATGG
TGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCCTTCAGTCACC
CCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGACAGCGACCTTT
CTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGGCATCTGGGCA
GAAGCCAGCAGCCTGCCCTGGCCATAGGACTAGGCAGAGATGTGTTCTGAGCTGGATATCCTGG
ATACAGAGTTGCTGCAGTTCCAACAGGACAGCGCCCTCCCCAATGTGCTAGGAGGGATCACTAC
ATTCCTCTCCCTCATTTATGCTGAGTGTAGAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGT
GGGAGGCATCTGTAGTCTTGGCCTCTTAACTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTG
GACTACAAGTCCCAGAGTGCAATGCACCTTGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAA
GAGCTGCTCAGTTACAAAGATGAGCTTCTTGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAAT
TGGAAGATCTTGTCTTCCATTTTGTCCCTGGCAGGGGTGGTGAGAATTGTAGATGACCAGAACC
TTAGTCCCTTCTTGCTAGACCCAGGTTGGAGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTG
TTTTCCCTTGCTAATGGGGCAGTGGACTGAGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCT
GGCAGAATGTGGGAGAGAAGGCTGCCTTGGCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAG
GGAGTGTCGGACATATTGCTTGAATGGCTTTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCT
TATCATCAATTCATCCTCCATGAGCCACCTGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGG
GGATTGGTGGAGCAGGCTGTGACCGGCCTCTGTAACACTGGGCCTCTGAGACCCATCAAAGCCA
GATGAGCTGAGCTCAGACTGTGGGAAAATGGAGGCAAATAAAGCTGAGTTTTGAGA

hide sequence

RefSeq Acc Id:

XM_006245281 ⟹ XP_006245343

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,078 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGAC
GCATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGG
TGCTAGGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGC
CGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTC
CCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCG
GATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTG
ACAGAAGTGGTCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCG
TAGCCCTGAGGAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGAT
GACTTGGGTGCCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTT
TCTCTTCCTCCTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGC
TGGTGCTTTCCGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGC
AGAATCATGGAGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGT
CAATCAATGGTGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCC
TTCAGTCACCCCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGAC
AGCGACCTTTCTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGG
CATCTGGGCAGAAGCCAGCAGGTGGGCGGGGGGCACCGCAACGACAGCATGGGCAGCCCAAGGC
CCAGCACCAAGACCCTGATGTGGGGGGCCTGCATAAGGGGGCAAGGGGCGAGGCAGCCAAAGTC
AGCCCATCCTCAGAGGAGAAGGCCTCTCGCTGCCTCATTCTCTGAGAACCAGGCCGATGCTGGA
CTGACGCAGGTCCCAACTCAGAGTCCAGGTCACTGTCTGGAGTGCAGAATAGTGTGGCCTGACT
TGCAGGATTCCAAACTGTCCCTCCACAAGTTTCCCTCCCGTGTCCACCTGTATTGTGGACAGAT
TTGTTGTACTCTGTCCAGGGCTGACAGGTCCCTGGGTAAAGCCCAGATTGGGGGGTGGGGGGAC
CAGTGCCTGTGGAGCTCAGAGGCACTGGTTGGATCAGACACTGCTAAAGGACATTAGTGGGTTT
GGGGTGCCCAAGTCTTTTCCTGCCGTTTATGTTGCTGATGCTGTCGAGGAAGGAGGACTTGGCC
TGGCATGCTCTGAGCTTGAGCTTCCCCCAGGGAATAGCACAGGCCGAGGAGCCTCTGCTGTCCT
TGGCCAGATGCAGCCCTCCCGGTTTCTGTGTAGAACTGAGCTCTCACCCACTGTCTCGTTTCCC
CTCTGGTGCTGCCTTCCTCCCACTCCACTCCACTCCGCAACGCCCACCCTTCGGCTGCAACGCT
TGCTTTCATTGCTGCTTGGCTAGGTCTCCCTTCTCCTTCTCTTAGAAGCCCAGGAAGATGCTGG
GGCCAGTGGGTCCATAAGATCTTCTGGGGAGGCTAGCTAGGTAGGGTGGAAGCCTCTCAGCCCT
CCAGAGTCTCAACCAGAGTCAACTCCTCTTCCCTTCTTCTTGCTGCCTCAGCCTGCCCTGGCCA
TAGGACTAGGCAGAGGTGAGGCTGGCTGTCCCTGGAGAGGTGGGATAGGGCCAGGGTGACCCAG
AGGGAGGCCTAGGTGGGGACTGTATTTGTACTGCCCACTCATCACACATCAGAGCTGAGGGGCT
GGCCTAGGAGTGCATGCTCAGCTCCATCCTCTTCTGCTTGCAGCTGACCCTCTCTCCTGTCACC
CACCCCTGCTCTCTCCCCAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGTT
CCAACAGGACAGCGCCCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTAT
GCTGAGTGTAGAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCTT
GGCCTCTTAACTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGTG
CAATGCACCTTGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAAG
ATGAGCTTCTTGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCCA
TTTTGTCCCTGGCAGGGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAGA
CCCAGGTTGGAGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGGG
CAGTGGACTGAGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGAA
GGCTGCCTTGGCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTGC
TTGAATGGCTTTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTCC
ATGAGCCACCTGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCTG
TGACCGGCCTCTGTAACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGACT
GTGGGAAAATGGAGGCAAATAAAGCTGAGTTTTGAGA

hide sequence

RefSeq Acc Id:

XM_006245283 ⟹ XP_006245345

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGAC
GCATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGG
TGCTAGGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGC
CGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTC
CCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCG
GATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTG
ACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGGGAAGGGCTGACGGGGGCAGGAAGTGG
TCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCGTAGCCCTGAG
GAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGATGACTTGGGTG
CCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTTTCTCTTCCTC
CTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGCTGGTGCTTTC
CGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGG
AGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGTCAATCAATGG
TGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCCTTCAGTCACC
CCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGACAGCGACCTTT
CTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGGCATCTGGGCA
GAAGCCAGCAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGTTCCAACAGGA
CAGCGCCCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTATGCTGAGTGT
AGAGCTGGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCTTGGCCTCTTA
ACTCTCTTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGTGCAATGCACC
TTGGCCTCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAAGATGAGCTTC
TTGGGATTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCCATTTTGTCCC
TGGCAGGGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAGACCCAGGTTG
GAGCAAGCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGGGCAGTGGACT
GAGTAGATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGAAGGCTGCCTT
GGCTGGAGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTGCTTGAATGGC
TTTCTTTGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTCCATGAGCCAC
CTGTCCTCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCTGTGACCGGCC
TCTGTAACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGACTGTGGGAAAA
TGGAGGCAAATAAAGCTGAGTTTTGAGA

hide sequence

RefSeq Acc Id:

XM_039084218 ⟹ XP_038940146

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI

RefSeq Acc Id:

XR_005488969

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,738,551 (+)	NCBI

RefSeq Acc Id:

XR_357089

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,731,060 - 76,739,278 (+)	NCBI
Rnor_6.0	9	82,436,453 - 82,444,669 (+)	NCBI
Rnor_5.0	9	82,205,714 - 82,213,930 (+)	NCBI

Sequence:

show sequence

CCCCCCTCGTGTGACCGGCCGAGCCGGCCCTCTCTGAGTCTCTAGTAGTTTCCGCGGCGCTGAC
GCATGCTTGCGCACACAACCCAGCCTGGCGCGTCGTACGCAGCCGCCGCGAGCCGGGCAGCGGG
TGCTAGGCGGTTCCCCCGCGGGGGGCAGGGGCGGGACTCCGGGCAGAGGAGCCTGGAGGAGGGC
CGCCTGACGGCTGAGTTGCCATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTC
CCCTGATGACATCAAGAAGGCGTACCGAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCG
GATAATAAAGAGTTTGCTGAGAAAAAATTTAAGGAGGTGGCAGAGGCCTATGAAGTACTGTCTG
ACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGGGAAGGGCTGACGGGGGCAGGAAGTGG
TCCTTCTCGATCGGAAACTGGTGGTATGGAGCCTGGCTTCACATTCACCTTCCGTAGCCCTGAG
GAAGTCTTCCGGGAGTTCTTCGGGAGTGGAGACCCCTTTTCGGAGCTCTTTGATGACTTGGGTG
CCTTCTCGGAGCTTCAGAACCAGGGTTCCCGACTCACCGGCCCTTTCTTTACTTTCTCTTCCTC
CTTTCCTGGCAACTCTGATTTCTCCTCCTCGTCTTTCTCCTTCAGCCCGGGGGCTGGTGCTTTC
CGCTCTGTTTCTACGTCCACAACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGG
AGAACGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAGCTGAAGTCAGTGTCAATCAATGG
TGTCCCAGATGACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAGCCTTCAGTCACC
CCTGGGTTGGGGGTCATGCAGGTCCGGCCGACCTCTGTCTCTCGTCCCCCTGACAGCGACCTTT
CTGAGGATGAGGACATGCAGCTTGCCATGGCGTACAGCCTGTCAGAGATGGAGGCATCTGGGCA
GAAGCCAGCAGGTGGGCGGGGGGCACCGCAACGACAGCATGGGCAGCCCAAGGCCCAGCACCAA
GACCCTGATGTGGGGGGCCTGCATAAGGGGGCAAGGGGCGAGGCAGCCAAAGTCAGCCCATCCT
CAGAGGAGAAGGCCTCTCGCTGCCTCATTCTCTGAGAACCAGGCCGATGCTGGACTGACGCAGG
TCCCAACTCAGAGTCCAGGTCACTGTCTGGAGTGCAGAATAGTGTGGCCTGACTTGCAGGATTC
CAAACTGTCCCTCCACAAGTTTCCCTCCCGTGTCCACCTGTATTGTGGACAGATTTGTTGTACT
CTGTCCAGGGCTGACAGGTCCCTGGGTAAAGCCCAGATTGGGGGGTGGGGGGACCAGTGCCTGT
GGAGCTCAGAGGCACTGGTTGGATCAGACACTGCTAAAGGACATTAGTGGGTTTGGGGTGCCCA
AGTCTTTTCCTGCCGTTTATGTTGCTGATGCTGTCGAGGAAGGAGGACTTGGCCTGGCATGCTC
TGAGCTTGAGCTTCCCCCAGGGAATAGCACAGGCCGAGGAGCCTCTGCTGTCCTTGGCCAGATG
CAGCCCTCCCGGTTTCTGTGTAGAACTGAGCTCTCACCCACTGTCTCGTTTCCCCTCTGGTGCT
GCCTTCCTCCCACTCCACTCCACTCCGCAACGCCCACCCTTCGGCTGCAACGCTTGCTTTCATT
GCTGCTTGGCTAGGTCTCCCTTCTCCTTCTCTTAGAAGCCCAGGAAGATGCTGGGGCCAGTGGG
TCCATAAGATCTTCTGGGGAGGCTAGCTAGGTAGGGTGGAAGCCTCTCAGCCCTCCAGAGTCTC
AACCAGAGTCAACTCCTCTTCCCTTCTTCTTGCTGCCTCAGCCTGCCCTGGCCATAGGACTAGG
CAGAGATGTGTTCTGAGCTGGATATCCTGGATACAGAGTTGCTGCAGTTCCAACAGGACAGCGC
CCTCCCCAATGTGCTAGGAGGGATCACTACATTCCTCTCCCTCATTTATGCTGAGTGTAGAGCT
GGGGACTGGGGTGGCGGGTGGGGACTGAGTGGGAGGCATCTGTAGTCTTGGCCTCTTAACTCTC
TTCCCTGGGTGCTTAGTGCTGTGTTTGGTGGACTACAAGTCCCAGAGTGCAATGCACCTTGGCC
TCGGTTCTTATAGCTTTTATCCCAGGGGAAGAGCTGCTCAGTTACAAAGATGAGCTTCTTGGGA
TTTGTAGTTCCAACCCTGGCTAGTCTGAATTGGAAGATCTTGTCTTCCATTTTGTCCCTGGCAG
GGGTGGTGAGAATTGTAGATGACCAGAACCTTAGTCCCTTCTTGCTAGACCCAGGTTGGAGCAA
GCAGATTCATGTAGCATCTGAGAGAGGTTGTTTTCCCTTGCTAATGGGGCAGTGGACTGAGTAG
ATAGGGCGTGGTCCTGGACGGCTGTGGGCTGGCAGAATGTGGGAGAGAAGGCTGCCTTGGCTGG
AGTGTGTATGGCAAGGATCGGCATGCAGAGGGAGTGTCGGACATATTGCTTGAATGGCTTTCTT
TGACCTCTGACCTTGCTGCCCACTCTTTCTTATCATCAATTCATCCTCCATGAGCCACCTGTCC
TCCTGCCTGGGGAGCCCAAGGCCAGCAAGGGGATTGGTGGAGCAGGCTGTGACCGGCCTCTGTA
ACACTGGGCCTCTGAGACCCATCAAAGCCAGATGAGCTGAGCTCAGACTGTGGGAAAATGGAGG
CAAATAAAGCTGAGTTTTGAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103011	(Get FASTA)	NCBI Sequence Viewer
	NP_001386044	(Get FASTA)	NCBI Sequence Viewer
	NP_001386045	(Get FASTA)	NCBI Sequence Viewer
	NP_001386046	(Get FASTA)	NCBI Sequence Viewer
	NP_001386047	(Get FASTA)	NCBI Sequence Viewer
	XP_006245338	(Get FASTA)	NCBI Sequence Viewer
	XP_006245341	(Get FASTA)	NCBI Sequence Viewer
	XP_006245342	(Get FASTA)	NCBI Sequence Viewer
	XP_006245343	(Get FASTA)	NCBI Sequence Viewer
	XP_006245345	(Get FASTA)	NCBI Sequence Viewer
	XP_038940146	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66710	(Get FASTA)	NCBI Sequence Viewer
	EDL75414	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001103011 ⟸ NM_001109541

- UniProtKB:

D4ABC2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDRSGPSR
SETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQNQGSRLTGPFFTFSSSFPG
NSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSINGVPD
DLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQLAMAYSLSEMEASGQKPA
DVF

hide sequence

RefSeq Acc Id:

XP_006245338 ⟸ XM_006245276

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI
YDRYGREGLTGAGSGPSRSETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQN
QGSRLTGPFFTFSSSFPGNSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERV
EVEEDGQLKSVSINGVPDDLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQ
LAMAYSLSEMEASGQKPAGGRGAPQRQHGQPKAQHQDPDVGGLHKGARGEAAKVSPSSEEKASR
CLIL

hide sequence

RefSeq Acc Id:	XP_006245342 ⟸ XM_006245280
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A3U5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI YDRYGREGLTGAGSGPSRSETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQN QGSRLTGPFFTFSSSFPGNSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERV EVEEDGQLKSVSINGVPDDLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQ LAMAYSLSEMEASGQKPAACPGHRTRQRCVLSWISWIQSCCSSNRTAPSPMC hide sequence

RefSeq Acc Id:	XP_006245345 ⟸ XM_006245283
- Peptide Label:	isoform X5
- UniProtKB:	B2RYA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI YDRYGREGLTGAGSGPSRSETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQN QGSRLTGPFFTFSSSFPGNSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERV EVEEDGQLKSVSINGVPDDLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQ LAMAYSLSEMEASGQKPADVF hide sequence

RefSeq Acc Id:

XP_006245343 ⟸ XM_006245281

- Peptide Label:

isoform X3

- Sequence:

show sequence

MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDRSGPSR
SETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQNQGSRLTGPFFTFSSSFPG
NSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSINGVPD
DLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQLAMAYSLSEMEASGQKPA
GGRGAPQRQHGQPKAQHQDPDVGGLHKGARGEAAKVSPSSEEKASRCLIL

hide sequence

RefSeq Acc Id:	XP_006245341 ⟸ XM_006245279
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A5U2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI YDRYGREGLTGAGSGPSRSETGGMEPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGAFSELQN QGSRLTGPFFTFSSSFPGNSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERV EVEEDGQLKSVSINGVPDDLALGLELSRREQQPSVTPGLGVMQVRPTSVSRPPDSDLSEDEDMQ LAMAYSLSEMEASGQKPAGGRGAPQRQHGQPKAQHQDPDVGGLHKGARGEAAKVSPSSEEKASR CLIL hide sequence

RefSeq Acc Id:

ENSRNOP00000026467 ⟸ ENSRNOT00000026467

RefSeq Acc Id:

ENSRNOP00000074369 ⟸ ENSRNOT00000081958

RefSeq Acc Id:	XP_038940146 ⟸ XM_039084218
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZJ88 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000076642 ⟸ ENSRNOT00000098165

RefSeq Acc Id:

ENSRNOP00000085337 ⟸ ENSRNOT00000095829

RefSeq Acc Id:

ENSRNOP00000086434 ⟸ ENSRNOT00000111890

RefSeq Acc Id:

ENSRNOP00000092193 ⟸ ENSRNOT00000102574

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYA8-F1-model_v2	AlphaFold	B2RYA8	1-277	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696776

Promoter ID:

EPDNEW_R7300

Type:

initiation region

Name:

Dnajb2_1

Description:

DnaJ heat shock protein family member B2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,436,499 - 82,436,559	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591035	AgrOrtholog
BioCyc Gene	G2FUF-27086	BioCyc
Ensembl Genes	ENSRNOG00000019506	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026467	ENTREZGENE
	ENSRNOP00000026467.2	UniProtKB/TrEMBL
	ENSRNOP00000074369	ENTREZGENE
	ENSRNOP00000074369.1	UniProtKB/TrEMBL
	ENSRNOP00000076642	ENTREZGENE
	ENSRNOP00000076642.1	UniProtKB/TrEMBL
	ENSRNOP00000085337	ENTREZGENE
	ENSRNOP00000085337.1	UniProtKB/TrEMBL
	ENSRNOP00000086434	ENTREZGENE
	ENSRNOP00000086434.1	UniProtKB/TrEMBL
	ENSRNOP00000092193.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026467	ENTREZGENE
	ENSRNOT00000026467.5	UniProtKB/TrEMBL
	ENSRNOT00000081958	ENTREZGENE
	ENSRNOT00000081958.2	UniProtKB/TrEMBL
	ENSRNOT00000095829	ENTREZGENE
	ENSRNOT00000095829.1	UniProtKB/TrEMBL
	ENSRNOT00000098165	ENTREZGENE
	ENSRNOT00000098165.1	UniProtKB/TrEMBL
	ENSRNOT00000102574.1	UniProtKB/TrEMBL
	ENSRNOT00000111890	ENTREZGENE
	ENSRNOT00000111890.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
	6.10.140.100	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7930287	IMAGE-MGC_LOAD
InterPro	DnaJ_dom_sf	UniProtKB/TrEMBL
	DnaJ_domain_CS	UniProtKB/TrEMBL
	DnaJ_N	UniProtKB/TrEMBL
	DNJB2	UniProtKB/TrEMBL
	Ubiquitin-int_motif	UniProtKB/TrEMBL
KEGG Report	rno:689593	UniProtKB/TrEMBL
MGC_CLONE	MGC:188408	IMAGE-MGC_LOAD
NCBI Gene	689593	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 2	UniProtKB/TrEMBL
	PTHR45168	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
PhenoGen	Dnajb2	PhenoGen
PRINTS	JDOMAIN	UniProtKB/TrEMBL
PROSITE	DNAJ_1	UniProtKB/TrEMBL
	DNAJ_2	UniProtKB/TrEMBL
	UIM	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
	UIM	UniProtKB/TrEMBL
Superfamily-SCOP	DnaJ_N	UniProtKB/TrEMBL
UniProt	A0A8I5ZJ88	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A3U5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5U2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJK4_RAT	UniProtKB/TrEMBL
	B2RYA8	ENTREZGENE, UniProtKB/TrEMBL
	D4ABC2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Dnajb2	DnaJ heat shock protein family (Hsp40) member B2	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Dnajb2	DnaJ (Hsp40) homolog, subfamily B, member 2	LOC689593	similar to DnaJ (Hsp40) homolog, subfamily B, member 10 isoform 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC689593	similar to DnaJ (Hsp40) homolog, subfamily B, member 10 isoform 2	LOC681650	similar to DnaJ homolog subfamily B member 10 (mDJ8)	Data Merged	1643240	APPROVED
2006-11-20	LOC689593	similar to DnaJ (Hsp40) homolog, subfamily B, member 10 isoform 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC681650	similar to DnaJ homolog subfamily B member 10 (mDJ8)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)