Rnf170 (ring finger protein 170) - Rat Genome Database

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Gene: Rnf170 (ring finger protein 170) Rattus norvegicus
Analyze
Symbol: Rnf170
Name: ring finger protein 170
RGD ID: 1590842
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of toll-like receptor 3 signaling pathway and protein K48-linked ubiquitination. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in autosomal dominant sensory ataxia 1 and hereditary spastic paraplegia 85. Orthologous to human RNF170 (ring finger protein 170); INTERACTS WITH (+)-schisandrin B; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase RNF170; LOC364654; similar to ring finger protein 170; uncharacterized protein LOC364654
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81672,631,638 - 72,656,893 (-)NCBIGRCr8
mRatBN7.21665,928,886 - 65,954,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1665,928,895 - 65,954,083 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1671,211,881 - 71,237,090 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01674,618,219 - 74,643,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01669,858,336 - 69,883,606 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01670,684,886 - 70,710,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1670,687,487 - 70,705,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,350,525 - 70,376,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1663,840,220 - 63,865,468 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21610068  


Genomics

Comparative Map Data
Rnf170
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81672,631,638 - 72,656,893 (-)NCBIGRCr8
mRatBN7.21665,928,886 - 65,954,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1665,928,895 - 65,954,083 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1671,211,881 - 71,237,090 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01674,618,219 - 74,643,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01669,858,336 - 69,883,606 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01670,684,886 - 70,710,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1670,687,487 - 70,705,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,350,525 - 70,376,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1663,840,220 - 63,865,468 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
RNF170
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38842,849,637 - 42,897,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl842,849,637 - 42,897,290 (-)EnsemblGRCh38hg38GRCh38
GRCh37842,704,780 - 42,751,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,829,548 - 42,870,939 (-)NCBINCBI36Build 36hg18NCBI36
Build 34842,829,547 - 42,870,939NCBI
Celera841,652,777 - 41,700,691 (-)NCBICelera
Cytogenetic Map8p11.21NCBI
HuRef841,227,278 - 41,275,153 (-)NCBIHuRef
CHM1_1842,751,675 - 42,798,772 (-)NCBICHM1_1
T2T-CHM13v2.0843,117,750 - 43,166,240 (-)NCBIT2T-CHM13v2.0
Rnf170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,609,396 - 26,633,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl826,609,396 - 26,641,818 (+)EnsemblGRCm39 Ensembl
GRCm38826,119,368 - 26,143,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl826,119,368 - 26,151,790 (+)EnsemblGRCm38mm10GRCm38
MGSCv37827,229,852 - 27,254,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36827,585,066 - 27,607,163 (+)NCBIMGSCv36mm8
Celera827,589,477 - 27,613,755 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map814.38NCBI
Rnf170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,096,483 - 13,147,637 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,093,914 - 13,148,800 (-)NCBIChiLan1.0ChiLan1.0
RNF170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2761,305,644 - 61,354,513 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1837,021,674 - 37,070,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0842,097,900 - 42,145,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1839,541,479 - 39,588,163 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,541,479 - 39,588,163 (-)Ensemblpanpan1.1panPan2
RNF170
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11622,901,224 - 22,929,990 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1622,900,313 - 22,927,125 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,406,404 - 23,435,154 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01624,652,836 - 24,681,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1624,651,914 - 24,681,602 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11623,021,166 - 23,049,910 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01623,586,183 - 23,614,945 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01623,637,006 - 23,665,786 (+)NCBIUU_Cfam_GSD_1.0
Rnf170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494345,936,442 - 45,975,111 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937108117,881 - 150,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937108111,111 - 147,077 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,780,129 - 11,816,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,777,942 - 11,817,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,589,027 - 12,602,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF170
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,852,995 - 40,896,800 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl840,850,552 - 40,896,887 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666052873,483 - 920,488 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf170
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478066,049 - 126,383 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478067,160 - 127,620 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf170
113 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:151
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000071134, ENSRNOT00000071258, ENSRNOT00000073124, ENSRNOT00000074584
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

Markers in Region
D16Got127  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21663,111,433 - 63,111,615 (+)MAPPERmRatBN7.2
Rnor_6.01667,300,852 - 67,301,033NCBIRnor6.0
Rnor_5.01666,932,584 - 66,932,765UniSTSRnor5.0
Celera1661,104,944 - 61,105,125UniSTS
Cytogenetic Map16q12.3UniSTS
BF387586  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21665,941,838 - 65,942,021 (+)MAPPERmRatBN7.2
Rnor_6.01670,697,837 - 70,698,019NCBIRnor6.0
Rnor_5.01670,364,028 - 70,364,210UniSTSRnor5.0
Celera1663,853,177 - 63,853,359UniSTS
RH 3.4 Map16620.1UniSTS
BF399659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21665,938,577 - 65,938,691 (+)MAPPERmRatBN7.2
Rnor_6.01670,694,578 - 70,694,691NCBIRnor6.0
Rnor_5.01670,360,769 - 70,360,882UniSTSRnor5.0
Celera1663,849,918 - 63,850,031UniSTS
RH 3.4 Map16622.4UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 57 41 19 41 8 10 74 35 37 11 8
Low 6 1 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001061874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_341189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_360569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071258   ⟹   ENSRNOP00000064113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,928,895 - 65,954,036 (-)Ensembl
Rnor_6.0 Ensembl1670,687,487 - 70,705,128 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107367   ⟹   ENSRNOP00000077528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,928,896 - 65,953,061 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110314   ⟹   ENSRNOP00000078493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,928,896 - 65,954,083 (-)Ensembl
RefSeq Acc Id: NM_001399260   ⟹   NP_001386189
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,828 (-)NCBI
mRatBN7.21665,928,890 - 65,954,083 (-)NCBI
RefSeq Acc Id: XM_006253329   ⟹   XP_006253391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,636 (-)NCBI
mRatBN7.21665,928,886 - 65,953,892 (-)NCBI
Rnor_6.01670,684,886 - 70,709,881 (-)NCBI
Rnor_5.01670,350,525 - 70,376,322 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253330   ⟹   XP_006253392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,891 (-)NCBI
mRatBN7.21665,928,888 - 65,954,071 (-)NCBI
Rnor_6.01670,684,886 - 70,710,147 (-)NCBI
Rnor_5.01670,350,525 - 70,376,322 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253331   ⟹   XP_006253393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,636 (-)NCBI
mRatBN7.21665,928,886 - 65,953,892 (-)NCBI
Rnor_6.01670,684,886 - 70,709,881 (-)NCBI
Rnor_5.01670,350,525 - 70,376,322 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253332   ⟹   XP_006253394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,636 (-)NCBI
mRatBN7.21665,928,886 - 65,953,892 (-)NCBI
Rnor_6.01670,684,886 - 70,709,881 (-)NCBI
Rnor_5.01670,350,525 - 70,376,322 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095193   ⟹   XP_038951121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,639,860 - 72,656,872 (-)NCBI
mRatBN7.21665,937,727 - 65,954,078 (-)NCBI
RefSeq Acc Id: XM_063275623   ⟹   XP_063131693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,636 (-)NCBI
RefSeq Acc Id: XM_063275624   ⟹   XP_063131694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,636,494 - 72,656,872 (-)NCBI
RefSeq Acc Id: XR_010058304
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,636 (-)NCBI
RefSeq Acc Id: XR_010058305
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,891 (-)NCBI
RefSeq Acc Id: XR_360569
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81672,631,638 - 72,656,893 (-)NCBI
mRatBN7.21665,928,888 - 65,954,073 (-)NCBI
Rnor_6.01670,684,886 - 70,710,147 (-)NCBI
Rnor_5.01670,350,525 - 70,376,322 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_006253392   ⟸   XM_006253330
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKY1 (UniProtKB/TrEMBL),   A6IVZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253393   ⟸   XM_006253331
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKY1 (UniProtKB/TrEMBL),   A6IVZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253391   ⟸   XM_006253329
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKY1 (UniProtKB/TrEMBL),   A6IVZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253394   ⟸   XM_006253332
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKY1 (UniProtKB/TrEMBL),   A6IVZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064113   ⟸   ENSRNOT00000071258
RefSeq Acc Id: XP_038951121   ⟸   XM_039095193
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000077528   ⟸   ENSRNOT00000107367
RefSeq Acc Id: ENSRNOP00000078493   ⟸   ENSRNOT00000110314
RefSeq Acc Id: NP_001386189   ⟸   NM_001399260
RefSeq Acc Id: XP_063131693   ⟸   XM_063275623
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063131694   ⟸   XM_063275624
- Peptide Label: isoform X2
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R436-F1-model_v2 AlphaFold M0R436 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590842 AgrOrtholog
BioCyc Gene G2FUF-10989 BioCyc
Ensembl Genes ENSRNOG00000045943 Ensembl
  ENSRNOG00000069749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071258.4 UniProtKB/TrEMBL
  ENSRNOT00000107367.1 UniProtKB/TrEMBL
  ENSRNOT00000110314.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro DUF1232 UniProtKB/TrEMBL
  RNF170 UniProtKB/TrEMBL
  Znf-RING_euk UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:364654 UniProtKB/TrEMBL
NCBI Gene 364654 ENTREZGENE
PANTHER PTHR22894 UniProtKB/TrEMBL
  PTHR22894:SF1 UniProtKB/TrEMBL
Pfam DUF1232 UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PhenoGen Rnf170 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045943 RatGTEx
  ENSRNOG00000069749 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I5Y6F4_RAT UniProtKB/TrEMBL
  A0A8I5ZKY1 ENTREZGENE, UniProtKB/TrEMBL
  A6IVZ0 ENTREZGENE, UniProtKB/TrEMBL
  M0R436_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rnf170  ring finger protein 170  Rnf170  ring finger protein 170  Data merged from RGD:149736326 737654 PROVISIONAL
2021-08-09 Rnf170  ring finger protein 170      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-03-17 Rnf170  ring finger protein 170  LOC364654  similar to ring finger protein 170  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC364654  similar to ring finger protein 170      Symbol and Name status set to provisional 70820 PROVISIONAL