Ppip5k2 (diphosphoinositol pentakisphosphate kinase 2) - Rat Genome Database
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Gene: Ppip5k2 (diphosphoinositol pentakisphosphate kinase 2) Rattus norvegicus
Analyze
Symbol: Ppip5k2
Name: diphosphoinositol pentakisphosphate kinase 2
RGD ID: 1590765
Description: Predicted to have ATP binding activity; diphosphoinositol-pentakisphosphate kinase activity; and inositol hexakisphosphate kinase activity. Predicted to be involved in phosphorylation. Predicted to localize to cytosol. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 100. Orthologous to human PPIP5K2 (diphosphoinositol pentakisphosphate kinase 2); INTERACTS WITH (+)-schisandrin B; 3,4-methylenedioxymethamphetamine; acetamide.
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC501194; inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2; LOC501194; MGC114398; similar to hypothetical protein D330021B20; uncharacterized protein LOC501194
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2998,315,280 - 98,394,537 (+)NCBI
Rnor_6.0 Ensembl9111,220,858 - 111,286,185 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09111,232,967 - 111,249,613 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09110,786,864 - 110,802,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4997,104,185 - 97,138,131 (+)NCBIRGSC3.4rn4RGSC3.4
Celera995,768,406 - 95,784,682 (+)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)

References

Additional References at PubMed
PMID:12477932   PMID:16751776   PMID:17690096   PMID:22119861  


Genomics

Comparative Map Data
Ppip5k2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2998,315,280 - 98,394,537 (+)NCBI
Rnor_6.0 Ensembl9111,220,858 - 111,286,185 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09111,232,967 - 111,249,613 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09110,786,864 - 110,802,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4997,104,185 - 97,138,131 (+)NCBIRGSC3.4rn4RGSC3.4
Celera995,768,406 - 95,784,682 (+)NCBICelera
Cytogenetic Map9q37NCBI
PPIP5K2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5103,120,149 - 103,212,799 (+)EnsemblGRCh38hg38GRCh38
GRCh385103,120,273 - 103,212,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375102,456,005 - 102,548,500 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365102,493,156 - 102,566,809 (+)NCBINCBI36hg18NCBI36
Celera598,413,095 - 98,486,730 (+)NCBI
Cytogenetic Map5q21.1NCBI
HuRef597,637,230 - 97,720,762 (+)NCBIHuRef
CHM1_15101,888,592 - 101,971,887 (+)NCBICHM1_1
Ppip5k2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,633,768 - 97,698,136 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,633,773 - 97,698,136 (-)Ensembl
GRCm38197,706,043 - 97,770,411 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,706,048 - 97,770,411 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,602,623 - 99,666,669 (-)NCBIGRCm37mm9NCBIm37
MGSCv36199,536,565 - 99,591,955 (-)NCBImm8
Celera1100,585,256 - 100,649,590 (-)NCBICelera
Cytogenetic Map1DNCBI
Ppip5k2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541810,821,782 - 10,891,482 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541810,822,220 - 10,898,070 (-)NCBIChiLan1.0ChiLan1.0
PPIP5K2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15104,175,883 - 104,258,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5104,175,883 - 104,258,688 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0598,475,410 - 98,558,189 (+)NCBIMhudiblu_PPA_v0panPan3
PPIP5K2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl38,002,012 - 8,087,684 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.138,013,879 - 8,083,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ppip5k2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365231,321,755 - 1,418,267 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPIP5K2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2108,585,959 - 108,690,869 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12108,596,733 - 108,690,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22112,660,171 - 112,712,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPIP5K2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,562,435 - 6,639,330 (+)NCBI
ChlSab1.1 Ensembl236,571,657 - 6,641,002 (+)Ensembl
Ppip5k2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474321,236,965 - 21,322,791 (+)NCBI

Position Markers
BE114061  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.09111,245,493 - 111,245,706NCBIRnor6.0
Rnor_5.09110,799,390 - 110,799,603UniSTSRnor5.0
RGSC_v3.4997,135,068 - 97,135,281UniSTSRGSC3.4
Celera995,780,933 - 95,781,146UniSTS
RH 3.4 Map9819.8UniSTS
Cytogenetic Map9q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)981411073119983851Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)983686153111609081Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)990024661119983851Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:296
Count of miRNA genes:156
Interacting mature miRNAs:176
Transcripts:ENSRNOT00000056439
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 1 1 74 33 41 11 1
Low 1 7 10 2 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039084862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ614676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000056439   ⟹   ENSRNOP00000053278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9111,233,147 - 111,249,477 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000072791   ⟹   ENSRNOP00000066251
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9111,279,495 - 111,284,630 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9111,243,050 - 111,245,251 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076669   ⟹   ENSRNOP00000068491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9111,220,858 - 111,246,986 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076729   ⟹   ENSRNOP00000068346
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9111,249,351 - 111,286,185 (+)Ensembl
RefSeq Acc Id: NM_001025775   ⟹   NP_001020946
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09111,232,967 - 111,249,613 (+)NCBI
Rnor_5.09110,786,864 - 110,802,995 (+)NCBI
RGSC_v3.4997,104,185 - 97,138,131 (+)RGD
Celera995,768,406 - 95,784,682 (+)RGD
Sequence:
RefSeq Acc Id: XM_039084862   ⟹   XP_038940790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084863   ⟹   XP_038940791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,340 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084864   ⟹   XP_038940792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,323,869 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084865   ⟹   XP_038940793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,748 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084866   ⟹   XP_038940794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,886 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084867   ⟹   XP_038940795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,504 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084868   ⟹   XP_038940796
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084869   ⟹   XP_038940797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084871   ⟹   XP_038940799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084872   ⟹   XP_038940800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,394,537 (+)NCBI
RefSeq Acc Id: XM_039084873   ⟹   XP_038940801
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084874   ⟹   XP_038940802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084875   ⟹   XP_038940803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084876   ⟹   XP_038940804
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084877   ⟹   XP_038940805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084878   ⟹   XP_038940806
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084879   ⟹   XP_038940807
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084880   ⟹   XP_038940808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084882   ⟹   XP_038940810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084883   ⟹   XP_038940811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084884   ⟹   XP_038940812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084885   ⟹   XP_038940813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084886   ⟹   XP_038940814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084887   ⟹   XP_038940815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084888   ⟹   XP_038940816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,374,519 (+)NCBI
RefSeq Acc Id: XM_039084889   ⟹   XP_038940817
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084890   ⟹   XP_038940818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084891   ⟹   XP_038940819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084892   ⟹   XP_038940820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,390,846 (+)NCBI
RefSeq Acc Id: XM_039084893   ⟹   XP_038940821
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084894   ⟹   XP_038940822
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,315,280 - 98,381,101 (+)NCBI
RefSeq Acc Id: XM_039084895   ⟹   XP_038940823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,329,641 - 98,381,101 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038940790 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940791 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940792 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940793 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940794 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940795 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940796 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940797 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940799 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940800 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940801 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940802 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940803 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940804 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940810 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940812 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940815 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940816 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940817 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940819 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940820 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940822 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940823 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97365 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001020946   ⟸   NM_001025775
- Sequence:
RefSeq Acc Id: ENSRNOP00000066251   ⟸   ENSRNOT00000072791
RefSeq Acc Id: ENSRNOP00000053278   ⟸   ENSRNOT00000056439
RefSeq Acc Id: ENSRNOP00000068491   ⟸   ENSRNOT00000076669
RefSeq Acc Id: ENSRNOP00000068346   ⟸   ENSRNOT00000076729
RefSeq Acc Id: XP_038940800   ⟸   XM_039084872
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038940820   ⟸   XM_039084892
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038940790   ⟸   XM_039084862
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940797   ⟸   XM_039084869
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940799   ⟸   XM_039084871
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940803   ⟸   XM_039084875
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038940802   ⟸   XM_039084874
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038940807   ⟸   XM_039084879
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038940811   ⟸   XM_039084883
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038940804   ⟸   XM_039084876
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038940808   ⟸   XM_039084880
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038940812   ⟸   XM_039084884
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038940818   ⟸   XM_039084890
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038940819   ⟸   XM_039084891
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038940796   ⟸   XM_039084868
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038940801   ⟸   XM_039084873
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038940805   ⟸   XM_039084877
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038940810   ⟸   XM_039084882
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038940814   ⟸   XM_039084886
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038940813   ⟸   XM_039084885
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038940817   ⟸   XM_039084889
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038940821   ⟸   XM_039084893
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038940806   ⟸   XM_039084878
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038940815   ⟸   XM_039084887
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038940822   ⟸   XM_039084894
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038940816   ⟸   XM_039084888
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038940791   ⟸   XM_039084863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940795   ⟸   XM_039084867
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940793   ⟸   XM_039084865
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940794   ⟸   XM_039084866
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940792   ⟸   XM_039084864
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940823   ⟸   XM_039084895
- Peptide Label: isoform X27
Protein Domains
PPIP5K2_N

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590765 AgrOrtholog
Ensembl Genes ENSRNOG00000011613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000053278 UniProtKB/TrEMBL
  ENSRNOP00000066251 UniProtKB/TrEMBL
  ENSRNOP00000068346 UniProtKB/TrEMBL
  ENSRNOP00000068491 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056439 UniProtKB/TrEMBL
  ENSRNOT00000072791 UniProtKB/TrEMBL
  ENSRNOT00000076669 UniProtKB/TrEMBL
  ENSRNOT00000076729 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7443073 IMAGE-MGC_LOAD
InterPro Acid_Pase_AS UniProtKB/TrEMBL
  His_Pase_superF_clade-2 UniProtKB/TrEMBL
  His_Pase_VIP1 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  VIP1_N UniProtKB/TrEMBL
KEGG Report rno:501194 UniProtKB/TrEMBL
MGC_CLONE MGC:114398 IMAGE-MGC_LOAD
NCBI Gene 501194 ENTREZGENE
PANTHER PTHR12750 UniProtKB/TrEMBL
Pfam Acid_phosphat_A UniProtKB/TrEMBL
  PPIP5K2_N UniProtKB/TrEMBL
PhenoGen Ppip5k2 PhenoGen
PROSITE HIS_ACID_PHOSPHAT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A096MK18_RAT UniProtKB/TrEMBL
  A0A096MKF1_RAT UniProtKB/TrEMBL
  F1LPI7_RAT UniProtKB/TrEMBL
  M0R9S1_RAT UniProtKB/TrEMBL
  Q4V8J1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-16 Ppip5k2  diphosphoinositol pentakisphosphate kinase 2  LOC501194  similar to hypothetical protein D330021B20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC501194  similar to hypothetical protein D330021B20      Symbol and Name status set to provisional 70820 PROVISIONAL