Sapcd2 (suppressor APC domain containing 2) - Rat Genome Database

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Gene: Sapcd2 (suppressor APC domain containing 2) Rattus norvegicus
Analyze
Symbol: Sapcd2
Name: suppressor APC domain containing 2
RGD ID: 1590629
Description: Predicted to be involved in several processes, including establishment of mitotic spindle orientation; negative regulation of protein localization to cell cortex; and symmetric cell division. Predicted to be located in several cellular components, including apical cortex; apical junction complex; and nuclear lumen. Orthologous to human SAPCD2 (suppressor APC domain containing 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC680531; LOC680531; similar to CG3880-PA; suppressor APC domain-containing protein 2; uncharacterized protein LOC680531
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,186,089 - 8,195,119 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,187,266 - 8,192,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,292,416 - 11,297,595 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0319,878,646 - 19,883,825 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0318,068,487 - 18,073,666 (+)NCBIRnor_WKY
Rnor_6.032,590,355 - 2,597,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,591,331 - 2,596,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,572,744 - 2,577,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,538,477 - 3,543,730 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,013,398 - 3,018,651 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23576022   PMID:23704824   PMID:26766442  


Genomics

Comparative Map Data
Sapcd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,186,089 - 8,195,119 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,187,266 - 8,192,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,292,416 - 11,297,595 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0319,878,646 - 19,883,825 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0318,068,487 - 18,073,666 (+)NCBIRnor_WKY
Rnor_6.032,590,355 - 2,597,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,591,331 - 2,596,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,572,744 - 2,577,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,538,477 - 3,543,730 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,013,398 - 3,018,651 (+)NCBICelera
Cytogenetic Map3p13NCBI
SAPCD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,062,127 - 137,070,557 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9137,062,127 - 137,070,557 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,956,579 - 139,965,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,076,585 - 139,084,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 349137,232,612 - 137,240,865NCBI
Celera9110,469,998 - 110,478,498 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,416,325 - 109,424,724 (-)NCBIHuRef
CHM1_19140,105,341 - 140,113,747 (-)NCBICHM1_1
T2T-CHM13v2.09149,298,084 - 149,306,470 (-)NCBIT2T-CHM13v2.0
Sapcd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,261,974 - 25,268,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,262,333 - 25,268,225 (+)EnsemblGRCm39 Ensembl
GRCm38225,372,035 - 25,378,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,372,321 - 25,378,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,227,841 - 25,233,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,194,330 - 25,217,374 (+)NCBIMGSCv36mm8
Celera225,099,316 - 25,105,204 (+)NCBICelera
Cytogenetic Map2A3NCBI
Sapcd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555135,086,379 - 5,090,876 (-)NCBIChiLan1.0ChiLan1.0
SAPCD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19137,091,559 - 137,099,275 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v09108,122,658 - 108,132,397 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SAPCD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,571,045 - 48,578,517 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,570,891 - 48,594,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,784,755 - 47,792,772 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,449,167 - 49,456,459 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,449,028 - 49,453,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,225,429 - 48,233,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,524,187 - 48,531,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,571,456 - 48,579,474 (+)NCBIUU_Cfam_GSD_1.0
Sapcd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,481,287 - 202,486,112 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936669888,911 - 893,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAPCD2
(Sus scrofa - pig)
No map positions available.
SAPCD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,119,873 - 1,127,966 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,121,302 - 1,127,533 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,174,059 - 4,182,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sapcd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760843,760 - 847,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760843,746 - 848,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AU047987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.238,188,382 - 8,188,604 (+)MAPPERmRatBN7.2
Rnor_6.032,592,423 - 2,592,644NCBIRnor6.0
Rnor_5.032,573,836 - 2,574,057UniSTSRnor5.0
RGSC_v3.433,539,569 - 3,539,790UniSTSRGSC3.4
Celera33,014,490 - 3,014,711UniSTS
Cytogenetic Map3p13UniSTS
RH136662  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.238,192,153 - 8,192,338 (+)MAPPERmRatBN7.2
Rnor_6.032,596,194 - 2,596,378NCBIRnor6.0
Rnor_5.032,577,607 - 2,577,791UniSTSRnor5.0
RGSC_v3.433,543,340 - 3,543,524UniSTSRGSC3.4
Celera33,018,261 - 3,018,445UniSTS
Cytogenetic Map3p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:237
Count of miRNA genes:173
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000017466
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 22 20 14 6 14 46 14 22
Low 2 21 22 16 13 16 2 4 28 17 18 11 2
Below cutoff 13 9 9 6 7 4 1 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017466   ⟹   ENSRNOP00000017466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,187,266 - 8,192,546 (+)Ensembl
Rnor_6.0 Ensembl32,591,331 - 2,596,583 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097743   ⟹   ENSRNOP00000093941
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,187,371 - 8,192,546 (+)Ensembl
RefSeq Acc Id: NM_001109418   ⟹   NP_001102888
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,187,291 - 8,192,544 (+)NCBI
Rnor_6.032,591,331 - 2,596,584 (+)NCBI
Rnor_5.032,572,744 - 2,577,997 (+)NCBI
RGSC_v3.433,538,477 - 3,543,730 (+)RGD
Celera33,013,398 - 3,018,651 (+)RGD
Sequence:
RefSeq Acc Id: XM_008761607   ⟹   XP_008759829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.238,186,089 - 8,195,119 (+)NCBI
Rnor_6.032,590,355 - 2,597,283 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102888 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759829 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58702 (Get FASTA)   NCBI Sequence Viewer  
  EDL93596 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102888   ⟸   NM_001109418
- UniProtKB: B0BN66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759829   ⟸   XM_008761607
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000017466   ⟸   ENSRNOT00000017466
RefSeq Acc Id: ENSRNOP00000093941   ⟸   ENSRNOT00000097743

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN66-F1-model_v2 AlphaFold B0BN66 1-387 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691876
Promoter ID:EPDNEW_R2399
Type:initiation region
Name:Sapcd2_1
Description:suppressor APC domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.032,591,309 - 2,591,369EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590629 AgrOrtholog
BioCyc Gene G2FUF-50458 BioCyc
Ensembl Genes ENSRNOG00000013069 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017466 ENTREZGENE
  ENSRNOP00000017466.2 UniProtKB/TrEMBL
  ENSRNOP00000093941.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017466 ENTREZGENE
  ENSRNOT00000017466.4 UniProtKB/TrEMBL
  ENSRNOT00000097743.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9028527 IMAGE-MGC_LOAD
InterPro Suppressor_APCD_1/2 UniProtKB/TrEMBL
KEGG Report rno:680531 UniProtKB/TrEMBL
MGC_CLONE MGC:187776 IMAGE-MGC_LOAD
NCBI Gene 680531 ENTREZGENE
PANTHER PTHR14907 UniProtKB/TrEMBL
PhenoGen Sapcd2 PhenoGen
UniProt A0A8I6AIH9_RAT UniProtKB/TrEMBL
  B0BN66 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-26 Sapcd2  suppressor APC domain containing 2  LOC680531  similar to CG3880-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680531  similar to CG3880-PA  LOC687229  similar to CG3880-PA  Data Merged 1643240 APPROVED
2006-11-20 LOC680531  similar to CG3880-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687229  similar to CG3880-PA      Symbol and Name status set to provisional 70820 PROVISIONAL