Tlr8 (toll-like receptor 8) - Rat Genome Database

Name: Tlr8
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tlr8 (toll-like receptor 8) Rattus norvegicus

Analyze

Symbol:

Tlr8

Name:

toll-like receptor 8

RGD ID:

1590327

Description:

Predicted to enable identical protein binding activity; nucleic acid binding activity; and pattern recognition receptor activity. Predicted to be involved in several processes, including cellular response to mechanical stimulus; pattern recognition receptor signaling pathway; and positive regulation of cytokine production. Predicted to act upstream of or within regulation of protein phosphorylation. Predicted to be located in external side of plasma membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human TLR8 (toll like receptor 8); PARTICIPATES IN Toll-like receptor signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC684440; similar to toll-like receptor 8

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TLR8 (toll like receptor 8)	RGD	RGD
Mus musculus (house mouse):	Tlr8 (toll-like receptor 8)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Tlr8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TLR8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TLR8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tlr8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TLR8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TLR8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tlr8 (toll like receptor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TLR8 (toll like receptor 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tlr8 (toll-like receptor 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tlr8a (toll-like receptor 8a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tlr8b (toll-like receptor 8b)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	lron-15	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	CG4168	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	tlr8	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	27,091,780 - 27,116,092 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	27,091,778 - 27,116,549 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	28,164,972 - 28,187,831 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	X	31,566,484 - 31,589,384 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	X	27,779,612 - 27,802,461 (+)	NCBI	Rnor_WKY
Rnor_6.0	X	28,539,158 - 28,562,803 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	28,539,158 - 28,562,803 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	28,932,434 - 28,956,373 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	27,503,122 - 27,525,908 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

anogenital venereal wart (ISO)

autistic disorder (ISO)

autoimmune hemolytic anemia (ISO)

contact dermatitis (ISO)

genetic disease (ISO)

hepatitis C (ISO)

Immunodeficiency 98 with Autoinflammation, X-Linked (ISO)

Joubert syndrome (ISO)

membranoproliferative glomerulonephritis (ISO)

Neurodevelopmental Disorders (ISO)

osteoarthritis (ISO)

respiratory syncytial virus infectious disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

bafilomycin A1 (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP)

chloroquine (ISO)

crocidolite asbestos (ISO)

diazinon (ISO)

dimethylarsinic acid (ISO)

Echimidine (EXP)

endosulfan (EXP)

epoxiconazole (ISO)

furan (EXP)

Heliotrine (EXP)

Lasiocarpine (EXP)

lead diacetate (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

malathion (ISO)

mangiferin (ISO)

metformin (ISO)

methamphetamine (ISO)

methylarsonic acid (ISO)

N-ethyl-N-nitrosourea (ISO)

nickel atom (ISO)

nitrates (EXP)

ozone (ISO)

paclitaxel (ISO)

Platyphylline (EXP)

potassium dichromate (ISO)

protein kinase inhibitor (ISO)

quinoline (ISO)

resiquimod (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

senecionine (EXP)

Senkirkine (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to mechanical stimulus (ISO)

defense response to virus (IBA,ISO)

I-kappaB kinase/NF-kappaB signaling (IBA,ISO)

inflammatory response (IEA)

innate immune response (IEA)

negative regulation of interleukin-12 production (ISO)

positive regulation of innate immune response (ISO)

positive regulation of interferon-alpha production (ISO)

positive regulation of interferon-beta production (ISO)

positive regulation of interleukin-1 beta production (ISO)

positive regulation of interleukin-6 production (IBA,ISO)

positive regulation of interleukin-8 production (ISO)

positive regulation of type II interferon production (ISO)

regulation of protein phosphorylation (ISO)

response to virus (ISO)

toll-like receptor 8 signaling pathway (ISO)

toll-like receptor signaling pathway (IBA)

Cellular Component

external side of plasma membrane (ISO)

plasma membrane (IBA)

Molecular Function

DNA binding (ISO)

double-stranded RNA binding (ISO)

identical protein binding (ISO)

pattern recognition receptor activity (IBA)

protein binding (ISO)

single-stranded RNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Toll-like receptor signaling pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	TLR4 links podocytes with the innate immune system to mediate glomerular injury.	Banas MC, etal., J Am Soc Nephrol. 2008 Apr;19(4):704-13. doi: 10.1681/ASN.2007040395. Epub 2008 Feb 6.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Combinations of TLR and NOD2 ligands stimulate rat microglial P2X4R expression.	Guo LH, etal., Biochem Biophys Res Commun. 2006 Oct 27;349(3):1156-62. Epub 2006 Sep 1.
4.	Pathogen recognition by the innate immune system.	Kumar H, etal., Int Rev Immunol. 2011 Feb;30(1):16-34.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Gene expression of nucleic acid-sensing pattern recognition receptors in children hospitalized for respiratory syncytial virus-associated acute bronchiolitis.	Scagnolari C, etal., Clin Vaccine Immunol. 2009 Jun;16(6):816-23. Epub 2009 Apr 22.
10.	Mechanistic investigation of immunosuppression in patients with condyloma acuminata.	Shi YJ, etal., Mol Med Rep. 2013 Aug;8(2):480-6. doi: 10.3892/mmr.2013.1511. Epub 2013 Jun 6.

Additional References at PubMed

PMID:12032557	PMID:14976262	PMID:16111635	PMID:16123302	PMID:16188996	PMID:16286015	PMID:19593445	PMID:20004021	PMID:23520111	PMID:24091496	PMID:24740015	PMID:24942581
PMID:25599397	PMID:32815784

Genomics

Comparative Map Data

Tlr8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	27,091,780 - 27,116,092 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	27,091,778 - 27,116,549 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	28,164,972 - 28,187,831 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	X	31,566,484 - 31,589,384 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	X	27,779,612 - 27,802,461 (+)	NCBI	Rnor_WKY
Rnor_6.0	X	28,539,158 - 28,562,803 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	28,539,158 - 28,562,803 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	28,932,434 - 28,956,373 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	27,503,122 - 27,525,908 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

TLR8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	12,906,620 - 12,923,169 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	X	12,906,620 - 12,923,169 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	12,924,739 - 12,941,288 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	12,834,679 - 12,851,209 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	17,038,744 - 17,055,292 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	10,691,356 - 10,708,478 (+)	NCBI		HuRef
CHM1_1	X	12,955,183 - 12,971,731 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	12,488,083 - 12,504,631 (+)	NCBI		T2T-CHM13v2.0

Tlr8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	166,024,119 - 166,047,325 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	166,025,692 - 166,047,325 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	167,241,123 - 167,264,329 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	167,242,696 - 167,264,329 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	163,680,664 - 163,701,720 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	162,580,693 - 162,607,911 (-)	NCBI		MGSCv36	mm8
Celera	X	150,416,046 - 150,437,421 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI

Tlr8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955544	303,319 - 306,426 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955544	302,027 - 317,110 (-)	NCBI	ChiLan1.0	ChiLan1.0

TLR8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	X	14,694,594 - 14,711,092 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	5,518,742 - 5,535,304 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	12,808,144 - 12,824,720 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TLR8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	9,381,159 - 9,399,938 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	9,337,717 - 9,356,229 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	9,333,237 - 9,351,758 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	9,317,807 - 9,336,322 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	9,357,237 - 9,375,770 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	9,349,380 - 9,367,898 (+)	NCBI		UU_Cfam_GSD_1.0

Tlr8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	2,638,020 - 2,642,609 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	2,638,014 - 2,641,133 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936470	2,638,020 - 2,642,201 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TLR8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	9,597,604 - 9,616,757 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	9,551,284 - 9,616,762 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	10,451,110 - 10,512,940 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TLR8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	11,387,933 - 11,405,056 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	11,400,907 - 11,404,029 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	13,179,722 - 13,196,707 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tlr8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624882	1,240,626 - 1,312,468 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624882	1,240,519 - 1,247,311 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tlr8
70 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	86
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000073535
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			1		12						4	9
Low	2	22	51	36	7	36	8	9	8	27	23	2	8
Below cutoff	1	15	5	5		5		1	41	8	9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001101009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	EF032638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000073535 ⟹ ENSRNOP00000066040

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	27,091,778 - 27,116,549 (+)	Ensembl
Rnor_6.0 Ensembl	X	28,539,158 - 28,562,803 (+)	Ensembl

RefSeq Acc Id:

NM_001101009 ⟹ NP_001094479

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	27,091,780 - 27,114,679 (+)	NCBI
Rnor_6.0	X	28,539,158 - 28,562,803 (+)	NCBI
Rnor_5.0	X	28,932,434 - 28,956,373 (+)	NCBI
Celera	X	27,503,122 - 27,525,908 (+)	RGD

Sequence:

show sequence

TGATGCTAAAACAACCAGATTTCAGAAGTTTGCCAAAATCTGCTCTCTGCACAACTCCTGTACA
CAGAGGACCACACTGCACTGCTACTGCAAGCTATTGAAAGAGAACCTTCCAGGGATCTCAGCCG
GAAAGGGGAAAACATGTCCCCTCAGTCGTGGATTCTGACCTGCTTTTGCCTGCTCTCCTCTGGA
ACCAGTGCAGTCTTCCTCAAAGGGAACTTTTCCAGAAGCTATCCCTGTGATGAGAAAAGGCACA
ATGCCCTTGTGACTGCAGAATGCAATCATCGTCAACTGCATGAAGTTCCCCAAACTATCGGCAA
ATATGTGACAGATGTAGACTTGTCAGACAATACTATTATGCACATAACAAATGAGTCCTTTCAG
AAGTTTCGAAACCTCACTAAAATCAATCTGAACCACAATGCCAAACAACAGCACCCAAATGAAA
ATAAAAATGGTATGAATATTACAGAAGGGGCTTTCCTCAGCCTAAGAAATCTAACTGAATTACT
GTTGGAAGACAACCAGTTATATACTATACCTGCTGGGTTGCCTGAGTCTTTGAAAGAACTTAGC
CTAATTCAAAACAATATATTTCAGGTAACTAAAAACAACACTTTCGGGCTCAGGAACTTGGAAA
GACTCTATTTGGGCTGGAACTGCTATTTTAAGTGTAATCAAATCTTTAAAGTAGAAGATGGGGC
ATTTAACAATCTTATAAACTTGAAGCTTCTCTCATTATCTTTCAATAACCTTTTCTCCGTGCCT
CCCAAACTACCAAGCTCTCTAAGCAAACTTTTTCTGAGCAATGCCAAGATCTCAACCATCACTC
AGGAAGACTTCAAAGGACTGGAACATTTAATATTACTAGATTTGAGTGGAAACTGCCCAAGGTG
TTTCAATGCCCCATTTCCTTGTGAATCTTGCAACTTAAGTGCGTCCATCAGAATACATCCTCTT
GCTTTTCAAAATCTCACTCAACTTCGCTTTCTTAACCTCTCTAGCACTTCCCTCAGGACGATTC
CTTCTACCTGGTTCGACAATCTGACAAATTTGAAGGAACTCCATCTTGAATTCAATTATTTAGT
TCAAGAAATTGCCTCAGGAGCATTTTTAACCAAGCTACCCAGTTTACAAACCCTTGACCTGTCC
TTCAACTTTATACATAAAGAATATTTACAATATATTACTATCTCCCCGAACTTCTCTATGCTTC
GTTCTCTCAGGAAGTTGCACTTAAAAGGTTATGTGTTCCGAGAACTTAAAAAGGAACATTTCAA
GCCCCTCCAGAATCTTCCAAACTTAACAACCATTAACTTGGGCATTAACTTTATTGAGAAAATT
GATTTCAAAGCTTTCCAGGATTTTCCCAACCTCAAAGTTATTTACTTATCGGGAAATCGCATAG
CATCCGTAATAGATGGTACAGACCACTCCTCTTGGCGAAACCGTCTTAGGAAGCCTCTCTCAAC
AGACTATGACGAGTTTGATCCACACATGAATTTTTACCATAGCACTGAACCTTTAATAAAGCCA
CAGTGTACTACTTATGGCAAGGCCTTGGATTTAAGTTTGAACAATATTTTCGTTATTGGGAAAA
GTCAATTTGAAGGTTTTCAGGATATCGCCTGCTTAAATCTGTCTTTCAATGCCAATGGTCAAGT
GTTGAATGGCACAGAATTCTCATCCATGCCCCACATTAAATACTTGGATTTAACCAACAACAGA
CTAGACTTTGATGATAACCAGACCTTCAGTGACCTTCATGATCTAGAAGTGTTGGACCTGAGCC
ACAATGCACACTATTTCAGTATAGCAGGGGTAACACACCGTCTAGGATTTATCCAGAACTTAAT
AAAGCTCAAGGTGTTAAACCTGAGCCACAATGGCATTTACACGCTCACAGATGAATACAAGCTG
CAAAGCAAATCTCTGAAAGAGTTGGTTTTTAGTGGAAATCGCCTTGACCGTCTGTGGAATGCAA
ATGATGGCAAATACTGGTCCATTTTTACAAGTCTCGAGACTCTGACACGCTTGGACTTATCGTA
CAATAACCTTCAACAAATCCCAAATGAAGCATTCCTCAACTTGCCTCAGAGCCTCCAAGAGCTA
CATATCAATGATAACAGATTACGTTTCTTTAATTGGACATTACTCCAGTATTTTCCTCACCTTC
ATGTGCTGGACTTGGGGAGAAATGAGCTGTATTTTCTAACCAATTGCCTATCGAAGTTTACACA
TTCCCTGAAGACACTGCTGCTGAACCACAATCATTTCTCTCACCTACCTGCTGGCTTCCTCTCC
GAAGCCAGGAATCTGGTGTACCTGGATCTAAGTTTCAACACAATAAAGATGATCAATAAATCCT
CCCTGCAAACTGAGACAAAAACAAACTTGTCTGTTCTGGATCTACAAGGGAACCATTTTGACTG
CACGTGTGACATAAGTGATTTCCGAAGCTGGCTAGAAGAAAATCCGCATGTCAGAATTCCTAGA
TTGGTAGATGTCATTTGTTCCAATCCTGGGGATCAGAGATGGAAGAGTGTCATGAGCCTAGATC
TCACGACTTGTGTGTCAGATACCACTGCAGCTATCCTGTTCTTCTTCACATTCCTTACCACCTC
CACAGTGCTGTTGGCTGCTCTGGTTCATCATCTGTTTTACTGGGATGTTTGGTTTATCTATCAC
ATGTGCTCTGCTAAGTTAAGAGGCTACAGGTCTTCATCCACATCCCAAACTTTCTATGATGCTT
ACATTTCTTATGACACCAAAGACGCATCCGTCACTGACTGGGTGATCAATGAGCTGCGCTACCA
CCTTGAAGAGAGTGAGGACAAAAGTGTCCTCCTTTGCTTAGAGGAGAGGGATTGGGATCCGGGA
TTACCTATCATTGATAACCTCATGCAGAGCATAAACCAGAGCAAGAAGACAATCTTTGTTTTAA
CCAAGAAATATGCCAAGAGCTGGAACTTTAAAACCGCTTTCTACTTGGCCTTGCAGAGGCTAAT
GGATGAGAACATGGATGTGATTATCTTCATCCTCCTGGAACCAGTGTTACAGTATTCACAGTAC
CTGAGGCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAACCCCAAAGCGG
AAAACTTGTTTTGGCAAAGTCTTAAAAATGTGGTCTTGACCGAAAATGATTCACGGTATGACAA
TTTGTACATCGATTCCATTAGGCAATACTAATGCTGGGAAGTTATGGCTCTGTGCCATCAAAAA
AACCACACAGCTTCTCTTTATAATGAACTGTGGCAAGTGAATGGGCACATGGCTGCGCGAGGTG
CTGAAAATAAGGGACAATTGGGTGTTCAGCCCTAAAGAGGACACTTATACCAG

hide sequence

RefSeq Acc Id:

XM_039100074 ⟹ XP_038956002

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	27,091,780 - 27,116,092 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094479	(Get FASTA)	NCBI Sequence Viewer
	XP_038956002	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABM92444	(Get FASTA)	NCBI Sequence Viewer
	QQJ43002	(Get FASTA)	NCBI Sequence Viewer
	QQJ43003	(Get FASTA)	NCBI Sequence Viewer
	QQJ43004	(Get FASTA)	NCBI Sequence Viewer
	QQJ43005	(Get FASTA)	NCBI Sequence Viewer
	QQJ43006	(Get FASTA)	NCBI Sequence Viewer
	QQJ43007	(Get FASTA)	NCBI Sequence Viewer
	QQJ43008	(Get FASTA)	NCBI Sequence Viewer
	QQJ43009	(Get FASTA)	NCBI Sequence Viewer
	QQJ43010	(Get FASTA)	NCBI Sequence Viewer
	QQJ43011	(Get FASTA)	NCBI Sequence Viewer
	QQJ43012	(Get FASTA)	NCBI Sequence Viewer
	QQJ43013	(Get FASTA)	NCBI Sequence Viewer
	QQJ43014	(Get FASTA)	NCBI Sequence Viewer
	QQJ43015	(Get FASTA)	NCBI Sequence Viewer
	QQJ43016	(Get FASTA)	NCBI Sequence Viewer
	QQJ43017	(Get FASTA)	NCBI Sequence Viewer
	QQJ43018	(Get FASTA)	NCBI Sequence Viewer
	QQJ43019	(Get FASTA)	NCBI Sequence Viewer
	QQJ43020	(Get FASTA)	NCBI Sequence Viewer
	QQJ43021	(Get FASTA)	NCBI Sequence Viewer
	QQJ43022	(Get FASTA)	NCBI Sequence Viewer
	QQJ43023	(Get FASTA)	NCBI Sequence Viewer
	QQJ43024	(Get FASTA)	NCBI Sequence Viewer
	QQJ43025	(Get FASTA)	NCBI Sequence Viewer
	QQJ43026	(Get FASTA)	NCBI Sequence Viewer
	QQJ43027	(Get FASTA)	NCBI Sequence Viewer
	QQJ43028	(Get FASTA)	NCBI Sequence Viewer
	QQJ43029	(Get FASTA)	NCBI Sequence Viewer
	QQJ43030	(Get FASTA)	NCBI Sequence Viewer
	QQJ43031	(Get FASTA)	NCBI Sequence Viewer
	QQJ43032	(Get FASTA)	NCBI Sequence Viewer
	QQJ43033	(Get FASTA)	NCBI Sequence Viewer
	QQJ43034	(Get FASTA)	NCBI Sequence Viewer
	QQJ43035	(Get FASTA)	NCBI Sequence Viewer
	QQJ43036	(Get FASTA)	NCBI Sequence Viewer
	QQJ43037	(Get FASTA)	NCBI Sequence Viewer
	QQJ43038	(Get FASTA)	NCBI Sequence Viewer
	QQJ43039	(Get FASTA)	NCBI Sequence Viewer
	QQJ43040	(Get FASTA)	NCBI Sequence Viewer
	QQJ43041	(Get FASTA)	NCBI Sequence Viewer
	QQJ43042	(Get FASTA)	NCBI Sequence Viewer
	QQJ43043	(Get FASTA)	NCBI Sequence Viewer
	QQJ43044	(Get FASTA)	NCBI Sequence Viewer
	QQJ43045	(Get FASTA)	NCBI Sequence Viewer
	QQJ43046	(Get FASTA)	NCBI Sequence Viewer
	QQJ43047	(Get FASTA)	NCBI Sequence Viewer
	QQJ43048	(Get FASTA)	NCBI Sequence Viewer
	QQJ43049	(Get FASTA)	NCBI Sequence Viewer
	QQJ43050	(Get FASTA)	NCBI Sequence Viewer
	QQJ43051	(Get FASTA)	NCBI Sequence Viewer
	QQJ43052	(Get FASTA)	NCBI Sequence Viewer
	QQJ43053	(Get FASTA)	NCBI Sequence Viewer
	QQJ43054	(Get FASTA)	NCBI Sequence Viewer
	QQJ43055	(Get FASTA)	NCBI Sequence Viewer
	QQJ43056	(Get FASTA)	NCBI Sequence Viewer
	QQJ43057	(Get FASTA)	NCBI Sequence Viewer
	QQJ43058	(Get FASTA)	NCBI Sequence Viewer
	QQJ43059	(Get FASTA)	NCBI Sequence Viewer
	QQJ43060	(Get FASTA)	NCBI Sequence Viewer
	QQJ43061	(Get FASTA)	NCBI Sequence Viewer
	QQJ43062	(Get FASTA)	NCBI Sequence Viewer
	QQJ43063	(Get FASTA)	NCBI Sequence Viewer
	QQJ43064	(Get FASTA)	NCBI Sequence Viewer
	QQJ43065	(Get FASTA)	NCBI Sequence Viewer
	QQJ43066	(Get FASTA)	NCBI Sequence Viewer
	QQJ43067	(Get FASTA)	NCBI Sequence Viewer
	QQJ43068	(Get FASTA)	NCBI Sequence Viewer
	QQJ43069	(Get FASTA)	NCBI Sequence Viewer
	QQJ43070	(Get FASTA)	NCBI Sequence Viewer
	QQJ43071	(Get FASTA)	NCBI Sequence Viewer
	QQJ43072	(Get FASTA)	NCBI Sequence Viewer
	QQJ43073	(Get FASTA)	NCBI Sequence Viewer
	QQJ43074	(Get FASTA)	NCBI Sequence Viewer
	QQJ43075	(Get FASTA)	NCBI Sequence Viewer
	QQJ43076	(Get FASTA)	NCBI Sequence Viewer
	QQJ43077	(Get FASTA)	NCBI Sequence Viewer
	QQJ43078	(Get FASTA)	NCBI Sequence Viewer
	QQJ43079	(Get FASTA)	NCBI Sequence Viewer
	QQJ43080	(Get FASTA)	NCBI Sequence Viewer
	QQJ43081	(Get FASTA)	NCBI Sequence Viewer
	QQJ43082	(Get FASTA)	NCBI Sequence Viewer
	QQJ43083	(Get FASTA)	NCBI Sequence Viewer
	QQJ43084	(Get FASTA)	NCBI Sequence Viewer
	QQJ43085	(Get FASTA)	NCBI Sequence Viewer
	QQJ43086	(Get FASTA)	NCBI Sequence Viewer
	QQJ43087	(Get FASTA)	NCBI Sequence Viewer
	QQJ43088	(Get FASTA)	NCBI Sequence Viewer
	QQJ43089	(Get FASTA)	NCBI Sequence Viewer
	QQJ43090	(Get FASTA)	NCBI Sequence Viewer
	QQJ43091	(Get FASTA)	NCBI Sequence Viewer
	QQJ43092	(Get FASTA)	NCBI Sequence Viewer
	QQJ43093	(Get FASTA)	NCBI Sequence Viewer
	QQJ43094	(Get FASTA)	NCBI Sequence Viewer
	QQJ43095	(Get FASTA)	NCBI Sequence Viewer
	QQJ43096	(Get FASTA)	NCBI Sequence Viewer
	QQJ43097	(Get FASTA)	NCBI Sequence Viewer
	QQJ43098	(Get FASTA)	NCBI Sequence Viewer
	QQJ43099	(Get FASTA)	NCBI Sequence Viewer
	QQJ43100	(Get FASTA)	NCBI Sequence Viewer
	QQJ43101	(Get FASTA)	NCBI Sequence Viewer
	QQJ43102	(Get FASTA)	NCBI Sequence Viewer
	QQJ43103	(Get FASTA)	NCBI Sequence Viewer
	QQJ43104	(Get FASTA)	NCBI Sequence Viewer
	QQJ43105	(Get FASTA)	NCBI Sequence Viewer
	QQJ43106	(Get FASTA)	NCBI Sequence Viewer
	QQJ43107	(Get FASTA)	NCBI Sequence Viewer
	QQJ43108	(Get FASTA)	NCBI Sequence Viewer
	QQJ43109	(Get FASTA)	NCBI Sequence Viewer
	QQJ43110	(Get FASTA)	NCBI Sequence Viewer
	QQJ43111	(Get FASTA)	NCBI Sequence Viewer
	QQJ43112	(Get FASTA)	NCBI Sequence Viewer
	QQJ43113	(Get FASTA)	NCBI Sequence Viewer
	QQJ43114	(Get FASTA)	NCBI Sequence Viewer
	QQJ43115	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001094479 ⟸ NM_001101009
- Peptide Label:	precursor
- UniProtKB:	A5H300 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPQSWILTCFCLLSSGTSAVFLKGNFSRSYPCDEKRHNALVTAECNHRQLHEVPQTIGKYVTD VDLSDNTIMHITNESFQKFRNLTKINLNHNAKQQHPNENKNGMNITEGAFLSLRNLTELLLEDN QLYTIPAGLPESLKELSLIQNNIFQVTKNNTFGLRNLERLYLGWNCYFKCNQIFKVEDGAFNNL INLKLLSLSFNNLFSVPPKLPSSLSKLFLSNAKISTITQEDFKGLEHLILLDLSGNCPRCFNAP FPCESCNLSASIRIHPLAFQNLTQLRFLNLSSTSLRTIPSTWFDNLTNLKELHLEFNYLVQEIA SGAFLTKLPSLQTLDLSFNFIHKEYLQYITISPNFSMLRSLRKLHLKGYVFRELKKEHFKPLQN LPNLTTINLGINFIEKIDFKAFQDFPNLKVIYLSGNRIASVIDGTDHSSWRNRLRKPLSTDYDE FDPHMNFYHSTEPLIKPQCTTYGKALDLSLNNIFVIGKSQFEGFQDIACLNLSFNANGQVLNGT EFSSMPHIKYLDLTNNRLDFDDNQTFSDLHDLEVLDLSHNAHYFSIAGVTHRLGFIQNLIKLKV LNLSHNGIYTLTDEYKLQSKSLKELVFSGNRLDRLWNANDGKYWSIFTSLETLTRLDLSYNNLQ QIPNEAFLNLPQSLQELHINDNRLRFFNWTLLQYFPHLHVLDLGRNELYFLTNCLSKFTHSLKT LLLNHNHFSHLPAGFLSEARNLVYLDLSFNTIKMINKSSLQTETKTNLSVLDLQGNHFDCTCDI SDFRSWLEENPHVRIPRLVDVICSNPGDQRWKSVMSLDLTTCVSDTTAAILFFFTFLTTSTVLL AALVHHLFYWDVWFIYHMCSAKLRGYRSSSTSQTFYDAYISYDTKDASVTDWVINELRYHLEES EDKSVLLCLEERDWDPGLPIIDNLMQSINQSKKTIFVLTKKYAKSWNFKTAFYLALQRLMDENM DVIIFILLEPVLQYSQYLRLRQRICKSSILQWPNNPKAENLFWQSLKNVVLTENDSRYDNLYID SIRQY hide sequence

RefSeq Acc Id:

ENSRNOP00000066040 ⟸ ENSRNOT00000073535

RefSeq Acc Id:	XP_038956002 ⟸ XM_039100074
- Peptide Label:	isoform X1
- UniProtKB:	A5H300 (UniProtKB/TrEMBL)

Protein Domains

LRRCT TIR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A5H300-F1-model_v2	AlphaFold	A5H300	1-1029	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701785

Promoter ID:

EPDNEW_R12308

Type:

initiation region

Name:

Tlr8_1

Description:

toll-like receptor 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	28,539,206 - 28,539,266	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1590327	AgrOrtholog
BioCyc Gene	G2FUF-2659	BioCyc
Ensembl Genes	ENSRNOG00000045992	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000066040	ENTREZGENE
	ENSRNOP00000066040.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000073535	ENTREZGENE
	ENSRNOT00000073535.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10140	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	Toll-Interleukin_rcpt	UniProtKB/TrEMBL
	Toll_tir_struct_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:684440	UniProtKB/TrEMBL
NCBI Gene	684440	ENTREZGENE
PANTHER	PTHR47410:SF1	UniProtKB/TrEMBL
	TOLL-LIKE RECEPTOR 7-RELATED	UniProtKB/TrEMBL
Pfam	LRR_1	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
PhenoGen	Tlr8	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
SMART	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
UniProt	A0A8K0ZN04_RAT	UniProtKB/TrEMBL
	A0A8K0ZNB8_RAT	UniProtKB/TrEMBL
	A0A8K0ZQ97_RAT	UniProtKB/TrEMBL
	A0A8K2AD52_RAT	UniProtKB/TrEMBL
	A5H300	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-02	Tlr8	toll-like receptor 8	LOC684440	similar to toll-like receptor 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC684440	similar to toll-like receptor 8			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)