Cog2 (component of oligomeric golgi complex 2) - Rat Genome Database

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Gene: Cog2 (component of oligomeric golgi complex 2) Rattus norvegicus
Analyze
Symbol: Cog2
Name: component of oligomeric golgi complex 2
RGD ID: 1589822
Description: Predicted to be involved in Golgi organization; glycosylation; and retrograde transport, vesicle recycling within Golgi. Located in cytosol. Part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2); INTERACTS WITH bisphenol A; cadmium dichloride; paracetamol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: conserved oligomeric Golgi complex subunit 2; LOC690961; similar to component of oligomeric golgi complex 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,493,901 - 52,532,667 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,493,932 - 52,526,874 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,278,917 - 59,311,419 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01960,130,352 - 60,163,480 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01962,205,372 - 62,237,874 (+)NCBIRnor_WKY
Rnor_6.01957,286,955 - 57,322,853 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,286,985 - 57,319,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,991,534 - 68,027,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,703,252 - 54,736,246 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1951,863,929 - 51,896,870 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IDA)
Golgi stack  (ISO)
Golgi transport complex  (IBA,IDA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Sec34 is implicated in traffic from the endoplasmic reticulum to the Golgi and exists in a complex with GTC-90 and ldlBp. Loh E and Hong W, J Biol Chem. 2002 Jun 14;277(24):21955-61. Epub 2002 Apr 2.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Characterization of a mammalian Golgi-localized protein complex, COG, that is required for normal Golgi morphology and function. Ungar D, etal., J Cell Biol. 2002 Apr 29;157(3):405-15. Epub 2002 Apr 29.
Additional References at PubMed
PMID:7962052   PMID:15047703  


Genomics

Comparative Map Data
Cog2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,493,901 - 52,532,667 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,493,932 - 52,526,874 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,278,917 - 59,311,419 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01960,130,352 - 60,163,480 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01962,205,372 - 62,237,874 (+)NCBIRnor_WKY
Rnor_6.01957,286,955 - 57,322,853 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,286,985 - 57,319,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,991,534 - 68,027,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,703,252 - 54,736,246 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1951,863,929 - 51,896,870 (+)NCBICelera
Cytogenetic Map19q12NCBI
COG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,642,481 - 230,693,982 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1230,642,481 - 230,693,982 (+)EnsemblGRCh38hg38GRCh38
GRCh371230,778,227 - 230,829,728 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,844,881 - 228,896,351 (+)NCBINCBI36Build 36hg18NCBI36
Build 341227,084,992 - 227,136,462NCBI
Celera1204,044,170 - 204,095,755 (+)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,263,101 - 201,314,677 (+)NCBIHuRef
CHM1_11232,051,215 - 232,102,746 (+)NCBICHM1_1
T2T-CHM13v2.01230,022,982 - 230,074,527 (+)NCBIT2T-CHM13v2.0
Cog2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,247,506 - 125,278,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,247,506 - 125,278,747 (+)EnsemblGRCm39 Ensembl
GRCm388124,520,767 - 124,552,008 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,520,767 - 124,552,008 (+)EnsemblGRCm38mm10GRCm38
MGSCv378127,044,667 - 127,075,908 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,406,917 - 127,438,098 (+)NCBIMGSCv36mm8
Celera8128,824,258 - 128,856,384 (+)NCBICelera
Cytogenetic Map8E2NCBI
Cog2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554927,879,548 - 7,922,266 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554927,879,071 - 7,922,195 (-)NCBIChiLan1.0ChiLan1.0
COG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11211,219,050 - 211,270,483 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,219,199 - 211,269,894 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01206,192,089 - 206,243,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
COG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.048,726,595 - 8,777,957 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl48,726,595 - 8,777,970 (-)EnsemblROS_Cfam_1.0 Ensembl
Cog2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,558,250 - 43,590,958 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648419,723,475 - 19,756,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,661,768 - 59,704,008 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,661,762 - 59,704,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,343,277 - 64,376,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12567,904,611 - 67,956,278 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2567,904,638 - 67,956,435 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605569,810,151 - 69,861,840 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,861,823 - 18,906,517 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477518,861,329 - 18,906,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH129735  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,526,610 - 52,526,817 (+)MAPPERmRatBN7.2
Rnor_6.01957,319,066 - 57,319,272NCBIRnor6.0
Rnor_5.01968,023,654 - 68,023,860UniSTSRnor5.0
RGSC_v3.41954,735,983 - 54,736,189UniSTSRGSC3.4
Celera1951,896,607 - 51,896,813UniSTS
RH 3.4 Map19721.4UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:41
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000058074
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 56 40 19 40 1 4 74 35 39 11 1
Low 1 1 1 7 7 2 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000058074   ⟹   ENSRNOP00000054881
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,493,932 - 52,526,874 (+)Ensembl
Rnor_6.0 Ensembl1957,286,985 - 57,319,329 (+)Ensembl
RefSeq Acc Id: NM_001110494   ⟹   NP_001103964
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,932 - 52,526,874 (+)NCBI
Rnor_6.01957,286,985 - 57,319,329 (+)NCBI
Rnor_5.01967,991,534 - 68,027,336 (+)NCBI
RGSC_v3.41954,703,252 - 54,736,246 (+)RGD
Celera1951,863,929 - 51,896,870 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255816   ⟹   XP_006255878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,903 - 52,526,842 (+)NCBI
Rnor_6.01957,286,955 - 57,319,297 (+)NCBI
Rnor_5.01967,991,534 - 68,027,336 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098004   ⟹   XP_038953932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,901 - 52,514,480 (+)NCBI
RefSeq Acc Id: XM_039098005   ⟹   XP_038953933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,512,954 - 52,526,842 (+)NCBI
RefSeq Acc Id: XR_001842215
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,904 - 52,532,667 (+)NCBI
Rnor_6.01957,286,955 - 57,322,853 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005496689
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,901 - 52,514,480 (+)NCBI
RefSeq Acc Id: XR_005496690
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,901 - 52,514,480 (+)NCBI
RefSeq Acc Id: XR_005496691
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,493,904 - 52,526,842 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001103964 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953932 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953933 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96731 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001103964   ⟸   NM_001110494
- UniProtKB: D3ZT01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255878   ⟸   XM_006255816
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000054881   ⟸   ENSRNOT00000058074
RefSeq Acc Id: XP_038953932   ⟸   XM_039098004
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953933   ⟸   XM_039098005
- Peptide Label: isoform X3
Protein Domains
COG2   DUF3510

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZT01-F1-model_v2 AlphaFold D3ZT01 1-730 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701233
Promoter ID:EPDNEW_R11757
Type:initiation region
Name:Cog2_1
Description:component of oligomeric golgi complex 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,287,002 - 57,287,062EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589822 AgrOrtholog
BioCyc Gene G2FUF-5245 BioCyc
Ensembl Genes ENSRNOG00000018228 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000054881 ENTREZGENE
  ENSRNOP00000054881.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058074 ENTREZGENE
  ENSRNOT00000058074.3 UniProtKB/TrEMBL
InterPro COG2 UniProtKB/TrEMBL
  COG_complex_COG2_C UniProtKB/TrEMBL
  COG_su2_N UniProtKB/TrEMBL
KEGG Report rno:690961 UniProtKB/TrEMBL
NCBI Gene 690961 ENTREZGENE
PANTHER COG2 UniProtKB/TrEMBL
Pfam COG2 UniProtKB/TrEMBL
  DUF3510 UniProtKB/TrEMBL
PhenoGen Cog2 PhenoGen
UniProt D3ZT01 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Cog2  component of oligomeric golgi complex 2  LOC678914  similar to component of oligomeric golgi complex 2  Data Merged 1643240 APPROVED
2008-03-06 Cog2  component of oligomeric golgi complex 2  LOC690961  similar to component of oligomeric golgi complex 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690961  similar to component of oligomeric golgi complex 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC678914  similar to component of oligomeric golgi complex 2      Symbol and Name status set to provisional 70820 PROVISIONAL