Pnn-ps1 (pinin, desmosome associated protein, pseudogene 1) - Rat Genome Database

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Gene: Pnn-ps1 (pinin, desmosome associated protein, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Pnn-ps1
Name: pinin, desmosome associated protein, pseudogene 1
RGD ID: 1589657
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC498628; similar to Pinin
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81643,597,342 - 43,600,880 (-)NCBIGRCr8
mRatBN7.21636,863,343 - 36,867,784 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01639,608,662 - 39,613,413 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01639,387,045 - 39,389,460 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41639,881,863 - 39,989,967 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1635,017,212 - 35,021,963 (-)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pnn-ps1
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat

Markers in Region
AU047427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21636,938,870 - 36,939,072 (+)MAPPERmRatBN7.2
Rnor_6.01639,684,413 - 39,684,614NCBIRnor6.0
Rnor_5.01639,460,568 - 39,460,769UniSTSRnor5.0
RGSC_v3.41639,956,273 - 39,956,474UniSTSRGSC3.4
Celera1635,089,720 - 35,089,921UniSTS
Cytogenetic Map16p11UniSTS
G54093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21636,864,170 - 36,864,313 (+)MAPPERmRatBN7.2
mRatBN7.2676,765,916 - 76,766,059 (+)MAPPERmRatBN7.2
Rnor_6.0680,167,143 - 80,167,285NCBIRnor6.0
Rnor_6.01639,609,800 - 39,609,942NCBIRnor6.0
Rnor_5.01639,386,975 - 39,387,117UniSTSRnor5.0
Rnor_5.0689,693,015 - 89,693,157UniSTSRnor5.0
RGSC_v3.4679,766,805 - 79,766,947UniSTSRGSC3.4
RGSC_v3.41639,881,651 - 39,881,793UniSTSRGSC3.4
Celera1635,018,350 - 35,018,492UniSTS
Celera675,526,203 - 75,526,345UniSTS
Cytogenetic Map16p11UniSTS
Cytogenetic Map6q23UniSTS
UniSTS:532324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21636,865,690 - 36,866,057 (+)MAPPERmRatBN7.2
Rnor_6.01639,611,320 - 39,611,686NCBIRnor6.0
Rnor_5.01639,388,495 - 39,388,861UniSTSRnor5.0
Celera1635,019,870 - 35,020,236UniSTS
Cytogenetic Map16p11UniSTS
Cytogenetic Map6q23UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003752907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003752907   ⟹   XP_003752955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1635,018,562 - 35,100,052 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11473 BioCyc
NCBI Gene 498628 ENTREZGENE
PhenoGen Pnn-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pnn-ps1  pinin, desmosome associated protein, pseudogene 1  LOC498628  similar to Pinin  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC498628  similar to Pinin      Symbol and Name status set to provisional 70820 PROVISIONAL