Ppp1r16b (protein phosphatase 1, regulatory subunit 16B)

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Gene: Ppp1r16b (protein phosphatase 1, regulatory subunit 16B) Rattus norvegicus

Analyze

Symbol:

Ppp1r16b

Name:

protein phosphatase 1, regulatory subunit 16B

RGD ID:

1589460

Description:

Predicted to enable enzyme inhibitor activity and myosin phosphatase regulator activity. Predicted to be involved in several processes, including establishment of endothelial barrier; positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and regulation of protein dephosphorylation. Predicted to be located in several cellular components, including nuclear speck; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC680616; protein phosphatase 1 regulatory inhibitor subunit 16B; protein phosphatase 1, regulatory (inhibitor) subunit 16B; similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	147,323,652 - 147,419,658 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	147,324,126 - 147,418,937 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	151,155,966 - 151,247,333 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	159,655,291 - 159,746,686 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	157,390,851 - 157,482,509 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	155,160,474 - 155,267,002 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	155,160,481 - 155,262,941 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	160,348,036 - 160,448,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	149,404,662 - 149,496,290 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	146,021,248 - 146,111,968 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

focal epilepsy (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

camptothecin (ISO)

chlordecone (ISO)

choline (ISO)

crocidolite asbestos (ISO)

dimethylarsinic acid (ISO)

Erionite (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (ISO)

iron atom (ISO)

iron(0) (ISO)

isotretinoin (ISO)

L-methionine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lipopolysaccharide (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

progesterone (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

serpentine asbestos (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

taurine (ISO)

testosterone (EXP)

thapsigargin (ISO)

titanium dioxide (ISO)

trametinib (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (EXP)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

establishment of endothelial barrier (IBA,ISO)

negative regulation of peptidyl-serine dephosphorylation (ISO)

negative regulation of protein dephosphorylation (ISO)

positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (ISO)

positive regulation of endothelial cell proliferation (ISO)

positive regulation of protein dephosphorylation (ISO)

regulation of phosphatidylinositol 3-kinase signaling (ISO)

regulation of protein dephosphorylation (ISO)

regulation of sprouting angiogenesis (IBA)

Cellular Component

cell projection (ISO)

cytoplasm (IBA)

nuclear speck (IEA,ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (ISO)

Molecular Function

enzyme inhibitor activity (IBA)

myosin phosphatase regulator activity (IBA)

protein binding (ISO)

protein phosphatase regulator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12055102	PMID:16263087	PMID:18586956	PMID:21466834	PMID:21907835	PMID:25007873	PMID:26497934

Genomics

Comparative Map Data

Ppp1r16b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	147,323,652 - 147,419,658 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	147,324,126 - 147,418,937 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	151,155,966 - 151,247,333 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	159,655,291 - 159,746,686 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	157,390,851 - 157,482,509 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	155,160,474 - 155,267,002 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	155,160,481 - 155,262,941 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	160,348,036 - 160,448,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	149,404,662 - 149,496,290 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	146,021,248 - 146,111,968 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

PPP1R16B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	38,805,697 - 38,923,024 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	20	38,805,697 - 38,923,024 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	37,434,340 - 37,551,667 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	36,867,762 - 36,985,081 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	36,867,761 - 36,985,081	NCBI
Celera	20	34,145,025 - 34,262,342 (+)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	34,171,500 - 34,288,577 (+)	NCBI		HuRef
CHM1_1	20	37,338,553 - 37,455,887 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	40,535,804 - 40,653,075 (+)	NCBI		T2T-CHM13v2.0

Ppp1r16b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	158,508,653 - 158,608,254 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	158,507,318 - 158,608,254 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	158,666,733 - 158,766,334 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	158,665,398 - 158,766,334 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	158,492,469 - 158,592,070 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	158,356,839 - 158,454,314 (+)	NCBI		MGSCv36	mm8
Celera	2	164,600,218 - 164,699,871 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI

Ppp1r16b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	17,863,556 - 17,962,052 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	17,864,103 - 17,961,295 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPP1R16B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	20	44,524,017 - 44,642,026 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	35,130,114 - 35,248,031 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	36,236,924 - 36,354,329 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	36,237,535 - 36,354,329 (+)	Ensembl	panpan1.1		panPan2

PPP1R16B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	27,206,870 - 27,299,956 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	27,205,880 - 27,295,801 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	26,877,846 - 26,945,774 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	27,928,692 - 27,996,655 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	27,902,511 - 27,996,648 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	27,202,322 - 27,270,055 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	27,310,672 - 27,378,622 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	27,798,802 - 27,866,554 (+)	NCBI		UU_Cfam_GSD_1.0

Ppp1r16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	176,095,372 - 176,197,316 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	2,552,166 - 2,654,589 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936561	2,552,168 - 2,654,085 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPP1R16B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	41,752,845 - 41,866,362 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	41,753,697 - 41,866,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	47,245,836 - 47,536,967 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPP1R16B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	24,830,860 - 24,950,294 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	24,830,844 - 24,919,291 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	73,660,597 - 73,780,048 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppp1r16b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624842	793,249 - 889,513 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ppp1r16b
606 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	125
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000021133
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat

Markers in Region

D3Rat114

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	147,415,594 - 147,415,807 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	155,262,939 - 155,263,151	NCBI	Rnor6.0
Rnor_5.0	3	160,347,628 - 160,347,840	UniSTS	Rnor5.0
RGSC_v3.4	3	149,496,486 - 149,496,698	UniSTS	RGSC3.4
RGSC_v3.4	3	149,496,485 - 149,496,698	RGD	RGSC3.4
RGSC_v3.1	3	149,402,395 - 149,402,607	RGD
Celera	3	146,112,164 - 146,112,376	UniSTS
RH 3.4 Map	3	1360.0	RGD
RH 3.4 Map	3	1360.0	UniSTS
RH 2.0 Map	3	919.7	RGD
SHRSP x BN Map	3	75.5198	RGD
FHH x ACI Map	3	88.0299	RGD
Cytogenetic Map	3	q42	UniSTS

D3Got123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	147,384,418 - 147,384,637 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	155,220,704 - 155,220,922	NCBI	Rnor6.0
Rnor_5.0	3	160,388,884 - 160,389,102	UniSTS	Rnor5.0
RGSC_v3.4	3	149,465,168 - 149,465,387	RGD	RGSC3.4
RGSC_v3.4	3	149,465,169 - 149,465,387	UniSTS	RGSC3.4
RGSC_v3.1	3	149,371,078 - 149,371,296	RGD
Celera	3	146,081,467 - 146,081,677	UniSTS
RH 3.4 Map	3	1359.9	UniSTS
RH 3.4 Map	3	1359.9	RGD
RH 2.0 Map	3	919.8	RGD
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	2	10		16				47	8	1	11
Low	1	41	45	39	3	39	8	11	27	27	40		8
Below cutoff			2	2		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ212483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021133 ⟹ ENSRNOP00000021133

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	147,324,126 - 147,418,937 (+)	Ensembl
Rnor_6.0 Ensembl	3	155,160,481 - 155,262,941 (+)	Ensembl

RefSeq Acc Id:

NM_001191072 ⟹ NP_001178001

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,324,126 - 147,415,399 (+)	NCBI
Rnor_6.0	3	155,160,967 - 155,262,743 (+)	NCBI
Rnor_5.0	3	160,348,036 - 160,448,839 (-)	NCBI
Celera	3	146,021,248 - 146,111,968 (+)	NCBI

Sequence:

show sequence

CCGCACCACCAGCTGCGGCTCTGGGACCTGCGGATTGAGCCGGGGCTGGGAGCCGCCCGGGGCA
GGGCTCGAGAGAGCGGGCCCCACCATGAGGCTCCAGCCCCTCGGGAGCCCCTGTGCTCCCCTGG
CCCCGGGCTCACGGTGCTAGCCCCAGACAGAGCAAGGGCAGGTGCGGGGCCATGGCCAGCCACG
TGGACCTGCTCACAGAGCTGCAGCTGCTGGAGAAGGTGCCTACACTGGAGCGCCTGCGCGCAGC
CCAGAAGCGCCGGGCTCAGCAGCTGAAGAAGTGGGCACAGTATGAGCAGGACCTGCTTCATCGC
AAGCGCAAGCATGAGCGGAAGCGTAGCACCGGTGGACGTCGCAAGAAGGTGTCCTTCGAGGCCA
GTGTAGCGTTGCTGGAGGCCTCACTGAGGAATGACGCTGAAGAAGTACGATACTTCCTGAAGAA
CAAGGTCAGCCCTGATTTGTGTAATGAGGATGGGCTCACAGCCTTGCACCAGTGCTGCATTGAC
AACTTCGAAGAGATTGTGAAACTGTTGCTCTCCCATGGTGCAAACGTGAACGCCAAGGACAACG
AGTTGTGGACACCCTTGCACGCTGCAGCCACCTGCGGCCACATCAACCTAGTGAAGATCCTCGT
TCAGTATGGGGCTGACTTGCTTGCTGTCAACTCTGATGGGAACATGCCCTATGACCTCTGCGAG
GATGAACCCACCCTGGATGTCATCGAGACCTGCATGGCGTACCAAGGCATCACCCAGGAGAAAA
TCAATGAGATGCGAGCAGCTCCTGAGCAGAAGATGATTTCGGACATCCACTGCATGATAGCAGC
CGGCCAGGATCTCGACTGGATAGATGGCCAGGGTGCCACACTGCTACACATAGCTGGAGCCAAT
GGATACCTGCGGGCAGCCGAGCTCCTCCTGGACCACGGAGTGCGTGTGGACGTCAAGGATTGGG
ATGGCTGGGAGCCTCTGCATGCAGCAGCCTTCTGGGGACAGATGCCAATGGCAGAGCTCTTGGT
GTCCCATGGAGCTAGTCTCAGTGCCAGGACATCCATGGATGAGATGCCAATAGACTTGTGTGAG
GAGGAGGAATTCAAAGTCCTGCTGTTGGAGCTTAAACACAAGCATGATGTAATCATGAAGTCCC
AGCTGAGACACAAGTCATCCCTGAGCCGGAGGACATCCAGTGCAGGCAGCCGTGGGAAGGTGGT
GCGTCGAGCCAGCCTGTCAGACAGAACCAACCTATACCGGAAAGAATATGAAGGAGAGGCCATC
TTGTGGCAGCAGCGGAGTGCAGCTGAGGAACAGCGTACTTCCACCTACAACGGAGACATCAGGG
AGACCAGGACAGACCAGGAGAACAAGGACCCGAACCCCAGGCTGGAGAAGCCCGTGCTGCTTTC
AGAATTCTCTACCAAGATCTCCCGGGGAGAACTGGATGGGCCTGTGGAGAATGGCCTCCGGGCT
CCTGTCAGCACCTACCAGTATGCGCTGGCCAACGGGGACATATGGAAGATGCACGAGATACCTG
ACTACAGCATGGCCTATGGCAACCCCGGCATGGCTGATGTCCCCCCACCCTGGAGCGGCTTCAA
AGAGCAGAGCCCCCAGACGCTCCTGGAGCTGAAGAGGCAGAGGGCCGCAGCCAAGTTGCTCAGC
CACCCGTTCTTAAGCACCCACCTGGGCAGCAGTGTGGCCAGGTCGGGGGAGGGCAGCAGCGAAG
GCAAGGCCCCCTTGATCGGAGGCAGAACTTCCCCCTACAGCAGCAACGGGACCTCGGTGTATTA
TACGGTCACCAGCGGAGATCCCCCGCTCTTGAAGTTCAAGGCCCCCATGGAGGAGATGGAGGAG
AAAGTTCACGGCTGCTGCCGGATCTCCTAA

hide sequence

RefSeq Acc Id:

XM_008762383 ⟹ XP_008760605

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,323,652 - 147,419,658 (+)	NCBI
Rnor_6.0	3	155,160,474 - 155,267,002 (+)	NCBI

Sequence:

show sequence

CTGTTGCCTTTTCTCAGCTAAAAGACCTATCTATATAGCCCTGTCCTCTAGATAAGGCCTGGCC
AAGTTCGTGATATTTGGAGAGCCTTCTGACTCAAGCTTAACGTGGGAAGTTGACTTTCGGGCAC
TGACCCCATTCTGTGCCACTATAGGCCCCACCATGAGGCTCCAGCCCCTCGGGAGCCCCTGTGC
TCCCCTGGCCCCGGGCTCACGGTGCTAGCCCCAGACAGAGCAAGGGCAGGTGCGGGGCCATGGC
CAGCCACGTGGACCTGCTCACAGAGCTGCAGCTGCTGGAGAAGGTGCCTACACTGGAGCGCCTG
CGCGCAGCCCAGAAGCGCCGGGCTCAGCAGCTGAAGAAGTGGGCACAGTATGAGCAGGACCTGC
TTCATCGCAAGCGCAAGCATGAGCGGAAGCGTAGCACCGGTGGACGTCGCAAGAAGGTGTCCTT
CGAGGCCAGTGTAGCGTTGCTGGAGGCCTCACTGAGGAATGACGCTGAAGAAGTACGATACTTC
CTGAAGAACAAGGTCAGCCCTGATTTGTGTAATGAGGATGGGCTCACAGCCTTGCACCAGTGCT
GCATTGACAACTTCGAAGAGATTGTGAAACTGTTGCTCTCCCATGGTGCAAACGTGAACGCCAA
GGACAACGAGTTGTGGACACCCTTGCACGCTGCAGCCACCTGCGGCCACATCAACCTAGTGAAG
ATCCTCGTTCAGTATGGGGCTGACTTGCTTGCTGTCAACTCTGATGGGAACATGCCCTATGACC
TCTGCGAGGATGAACCCACCCTGGATGTCATCGAGACCTGCATGGCGTACCAAGGCATCACCCA
GGAGAAAATCAATGAGATGCGAGCAGCTCCTGAGCAGAAGATGATTTCGGACATCCACTGCATG
ATAGCAGCCGGCCAGGATCTCGACTGGATAGATGGCCAGGGTGCCACACTGCTACACATAGCTG
GAGCCAATGGATACCTGCGGGCAGCCGAGCTCCTCCTGGACCACGGAGTGCGTGTGGACGTCAA
GGATTGGGATGGCTGGGAGCCTCTGCATGCAGCAGCCTTCTGGGGACAGATGCCAATGGCAGAG
CTCTTGGTGTCCCATGGAGCTAGTCTCAGTGCCAGGACATCCATGGATGAGATGCCAATAGACT
TGTGTGAGGAGGAGGAATTCAAAGTCCTGCTGTTGGAGCTTAAACACAAGCATGATGTAATCAT
GAAGTCCCAGCTGAGACACAAGTCATCCCTGAGCCGGAGGACATCCAGTGCAGGCAGCCGTGGG
AAGGTGGTGCGTCGAGCCAGCCTGTCAGACAGAACCAACCTATACCGGAAAGAATATGAAGGAG
AGGCCATCTTGTGGCAGCAGCGGAGTGCAGCTGAGGAACAGCGTACTTCCACCTACAACGGAGA
CATCAGGGAGACCAGGACAGACCAGGAGAACAAGGACCCGAACCCCAGGCTGGAGAAGCCCGTG
CTGCTTTCAGAATTCTCTACCAAGATCTCCCGGGGAGAACTGGATGGGCCTGTGGAGAATGGCC
TCCGGGCTCCTGTCAGCACCTACCAGTATGCGCTGGCCAACGGGGACATATGGAAGATGCACGA
GATACCTGACTACAGCATGGCCTATGGCAACCCCGGCATGGCTGATGTCCCCCCACCCTGGAGC
GGCTTCAAAGAGCAGAGCCCCCAGACGCTCCTGGAGCTGAAGAGGCAGAGGGCCGCAGCCAAGT
TGCTCAGCCACCCGTTCTTAAGCACCCACCTGGGCAGCAGTGTGGCCAGGTCGGGGGAGGGCAG
CAGCGAAGGCAAGGCCCCCTTGATCGGAGGCAGAACTTCCCCCTACAGCAGCAACGGGACCTCG
GTGTATTATACGGTCACCAGCGGAGATCCCCCGCTCTTGAAGTTCAAGGCCCCCATGGAGGAGA
TGGAGGAGAAAGTTCACGGCTGCTGCCGGATCTCCTAATGTCTGTAAACTGGCCGAGAGAGCTG
CCTCGGAGAGGGGTCCCCAGAATCCAAAGCCAGTTCGACAGCCCTGGCTGGGGAGGTGTTGGGG
CAGCCGAGGAGAGGTGGGGTCTGCTTTCCAGAGGAATGCTGACCTTACCTCATGCCCAGCTGCC
CATAGCATCTCCACTTCCTCCTGTGCTGCTTCCTTGCCTCACTCAATGCCTGCATCTGAAGTAT
AGTGGGCCGACGCACACTGCAGTCTGATCCAGGGAGGGTGGGGTTGGGATCTCAGTTCTGTGCT
TGGTAAAGGCTTCTTAGACAAGGAATAACAACACCCCTTCACACACACACACACACACACACAC
ACACACACACACACACACACACACACAGAGAATCAATTTAGTGTGTGAGAAGGCTACACCTGAG
CTCTTGGGATGCAGATGGGGCTGAGAACTTGTGGGTTATCCCCAGAAGAATGAATTCAAGACAG
TCTTGGCACCACTGCCAACTGGCTTCCACTTGGGGAGAGGCCTGCTCAGTTGAGACCCACAGCT
TTGAAGTCATACCAGGCTGGGACACTATCACACCTAGCAGAGACAGGAAGTCCTATGGATTCAT
AGAAGCCAGGAGTCCATATGGATCAGGTTTGTGGGTCCAGGCCTTCTCCCCATAGCCTTGCTGA
GATCTGCTCTCATGCACATGTCAATAGGAAGGTGGAGGACTATTCACGGGTCAGGCTGGAAAGT
CAGGCCATTCATGCGTAGAAGAAACCAAATCTTGTTTTGGTCTTCCCTTGGAAGCGTAGGAGTT
AGGTAGGGTACAGCACACAGGTATTTTCCAAACTGTGTTTGGTAAAAGCCTTCTTTGAGGCTGT
AAGATTCCGGGTGGGAGGTAACCGAATTTGCCTTTTCCCAAGACAGTGTCACAGTTGGGTTTTA
TTGTCTGGTATTTGAGAAATGAATTTCATCAGGAGCTTCTGGGGAGGGGGGGAGGTCTTCCAGG
GAAAGGTGCACACACTGCTGAGAACACCAGGGTTAACGTTGATATGACACAGCATCCTAGCTGG
TCTTTGTGGTTTTCATGCTGTTCTGGTCCGGTCCATTTCAGCCTGCCTTCTTCAGCCTGAGCCA
TCACCTGGAGCAGTTGAGGCTTGCTTGCACCCCACCCTCCCACCTTACACAGTTGAGTCTGCAG
AGTGAATGCTCAGGCCCAGGTCCCTCCTAGCTTTGCCTTTTCTGTAATGCTATGTAAGACGTGT
TTGCCAAGCGTCGGCTCCCACCAGGAGGTCTGAAGGCTCTCAGCCTGCTTTTCCTGGAGTGGTT
ATGCCCAAAGCTGCAAACTGAGGTGCCCATGGCCACTGTCCTGTGCTGCCTTCAGGAGAGCACA
GCATGGCTGGAGTTGGCTATCATCCAAGCTGTACAGCTTTGCTGCCCTTGTCTTCCTGATGCTG
GGGAAGGAAGCCCACACCACGTCACGACCACACTTTCCCATGAACCCAGTGAAATTCTGCTCCA
TACACTGGCTCCACCGAAATCTTCTGGCATCACAGGCAAGCTATGAATTTGTTCCTTGCTCTGT
GCTCTTTTTATTTGTCCTCAAACTACCTCCTTAGAGCCCTGAGAGAGTCCCTATGTCACTCGGA
TGTATGGGACAGATGCCCACGTCTTTATGGCCTCCCAGTGCCACACCCTTAGTGGTTCAGCCTG
CCATTTGTTGGTCTCTGTCTCCACTGTGGCCTTAGGACCGCAGTAGACTAGAGATGAAGCGGGA
CCTGACTAAATTGGGCAGAGGCTTTATTAGAACCAGGAGTAGTGTGGGCCCAAGAGCACCCTGG
AGGCTACTAGATGCAGAAGGAGGTGCACAACACTAGGTCATCCCCCCCCAACTTCAGGACAGAT
GGGATCTGGCACAGTGATGTAATATAATATAACATAAGAGACTAAAGACAGTTTATTGAATCCC
TGGGGCCTCGGCTAGGCTCTGCAGTCCATGGCTGAAAGAGGAGATGATAAAAACACACACCTGT
GGCTTTAGACTTTTAGCTCTGACAGACACTGAAATGCCTCTGGAGATGACTTTAGCCACAAGGT
GGCCAGTCGGCCCGGCAGCCAGCCATGTACTCCTAGGAGTCAGCTGCCCAGGGTTTCTGAGCCC
TTTGCGCAGGGGCCAGAGAACAAAGGTATTTATTGCCTTCTCTGAGCTGTTCAGGCCATTTCTC
CTCCATAGCCAGCACTTCTTCCTGCCTCCTGGGCCATTCTTCTCTACCTGAGGGGTGGGAGACT
CAGCTGCCTCCTCCACGGGAGCTAATACCAGACAGTGTGGATTCATGGGCTTTTGTTCACGGTT
TCCACCAGGGATAAACAAATGTTCCCTGTTTAGGCTCCAAGTCCCCAGGGCACTTTGTGACTCT
TTGGAATATTGAGAGGCACAGTGAGGAACAATCTCCAGTGCGTGAGCCAGGGCCACCCACCCAT
TCACTCATGTGATTGAGGTGTGGAGACACACCAGACATTCGTTTTGGCAGATAATGGACTAGCC
GGGCAGCGAAGACTTTGATTTGTTGAAGACCGTGGGCATCCCTAGACTCGTCCATGATTCTAAT
CAGAGTGCCTCCATCCCAGACCAGTGCCCCCATGCTCTGCAGCACCTGCAGCTCTTAGAGTGTG
AATCTCTTGAGCTGGGACATAGCTCTATGGCTACACCTAGATAACATTTGCCACTAAGTGCAGA
GGCTAGATCTCAGGTACCAGGCAGACACTGTACTGGTCCGTCTAGAGCCTTCAGAGGTAGCCTT
CAGGCCAGCATCTATAGAGAACAATATAACAGCAGTCTAAGGTCAGTGCCCGGAAGAACCAGAA
GTCTGCAATTTGCTGTCAAATACATCCCTAGCATTTACAGTCCTGTTCTCGTTTTTTACTCATG
AATCGTACAGTCTTCTCCCCTACACCAACAGTGGATGTTGGGAGGGAGGACAACTACTTCTCTT
CAAATTAACCATTTCCATGTGTGTCAGCCTCTCTGCCTGGAAGGTATGGATCCAAGGGCTAGGA
GAAGCCTGGCAAGGTTGACCAGATGGCTCACTCCTACCAGGAACCTGTGTCTTGGCAGCCATTC
TTGGCAAACTGGAGACATCTATTTCCAAACCAGGTGCCCTGCAGTTCCCTGTGAGCTGTCATTC
CTTGCCCCCACCCTATGCTCCCCAAACTATTAGAAATTGGTAGCTATCACCAGATTGTGAATTT
CTGGCCAGTAGCTCAGGGAATTGGAATGAATCCTAAACCCAGGTCTATTGAAGACTTTGGGGAT
ATAATTCTTTATCAAATATGCAGCATTAATGAAGCTTCACTGCACTGTTTGATTAACTTGTAGA
TGTTTGGAAAGGTTGCCAGAGTGTGGCCCCAGCCAGGTGTAGTGGCACACACCTTTCATCCCAG
CACAAAGGAGGCAGAGGCATGTGATGTATTTCTGAGTTCCAGGCCAGCCAGGGCTACACGGAGA
AACCCTGTCTCAAAAAACCAAATAAATAAAAATAAAATATGGCCTTGGTTGGGTTAACACAGTC
TAGCTTTGTAACAATGTGAGACTCTTGATTCTTAGTGTTCATTACCCTCTGGTCCTGGCGTTGT
CTCCCACCTGCTCTCCCAAAGCAGGATACCGGGATGTTTTCCAGAGGGGCCATCCTTATATGAT
GTCAGGACTGTCTGAACTTTCACTATTTGTGGCCTGGTGATAGCCTCCCTTCCCCAGGGCACAG
AAAAGCCAAGGATCAAATGGCCAGGGTGGACAGCTCCACTGAAGTGACCCACTCTTTTTCTAGA
AAGCCCAAGGCCTCTCCCTTGTTAGCCAGAGGGCCTCCTTCTCATGGGCACTTCTAATGCCACT
GTGCGGGGCCTGGCTCTGCACACCCTGGAAAAGTCTGCAGACACCCAGCCCTCCGCAATAATTC
ACCAGACCAGAAGCCACTGATGTACAGAGAACACTTAAGAAAAAAAATGTATTTTATGTGAAAA
AAAAGTTAAAAACTCTGTATACTGTATCAGCAGCTTTCTGTAAAAATGGCAATCAAAAGAGTCT
AATATATTTAAAACTTTTTTAAAAAAAATATTCTCATGGATCTTTGATATTGTATTGAAGTAGC
TTCGTGCCTCCAAGGTGGGGTCTGACCGTATCACCAAGGGGCCTGTACCTCTGGAGTTACTCCC
AGCTGCCGAGGCCTGTGACGGAATTCGCTGTTATGGATTTTTAATTAAGATTATTAAATTCCTT
TTAATAACA

hide sequence

RefSeq Acc Id:

XM_008762384 ⟹ XP_008760606

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,324,361 - 147,419,658 (+)	NCBI
Rnor_6.0	3	155,161,055 - 155,267,002 (+)	NCBI

Sequence:

show sequence

AGTGGCGCCGCATTCCTCTCTGCACTCTGCGGATCCGGCAGGTGTCTCGGCCCCTTCCAGTCTG
GCTGCTGGAGAGGGGTGCCTTGGCCAAGGGAGGGTGGCTTAAGATAATTGGGGAGGGGGGGTGC
GGTGACGGTGGGATGTGCTGGAAAGGTACCGAGGGTGCGAGGCCGGGGAGTTGGGCCACTGTCT
CCCACGTCTCGCCTTCGGATGGGGAGGCTGGTCTACGTAGAGGGTGCATTGGCAGGTTGTCGAC
CAGGGCTGCAATGAGTGGATTTTGGGGGGCGATGTGAGGTCCGTGGTCTGTCTGGGCTACTGTC
TGCCAGGGTTACAAGGCTGGGTGGTGAAGCTACAGAACACCAGACGCCCTGGGCACGCGGTCTA
GGAGCCGGGCATGGGGGCGCCGCCCCCTCGCGTGGCGGCGCTTGGTCTGGGCAAGCAGCAGCAG
CGCGCTGAGAGCGTTGCTCCCGGGGTGGGAAAAGTCCCGGAGGCTGGTGTCCCTGTGGACAAAC
CTGACCCAGGGCGGGATCTCCACCCCTAGAGCCTGTGGGTCGGTCTCGGTAGCCCCCGGCGTGG
TGATTCCCCAGAAGGGATGCTCCCGGCCTCTCTGCCCGCCGCCTTAGGCGCGAGCTGCGGATCC
CCGCGCCCGGAGCGCTCCACTCCTCGCGAGTCCCGCGCATCCGCTCCCGCAGGGAACAGCGCCC
CCGAGCGCCCAAGATGTGCAGAAACGGCGCAGCCCTGCCCCAGAGGTCGACTGAGGGGTCTCCC
ACAAGGTCACGCTGAGCGCCCAGATCGCCCCGAGTGGGAACCAGGAGCGGGAGGCGCTCCTACC
CGCCTCCGGGGTGGATGCGGACTCTCTTTCCTCTGCGCTCCCCTCCCAGCCCTGCCTCCTGCTT
TACGGAAGATGCTGCTGATGCAGCTTCCAGTCCCGGGCATCGGATAATCGGGTCTCTAGGCCCC
ACCATGAGGCTCCAGCCCCTCGGGAGCCCCTGTGCTCCCCTGGCCCCGGGCTCACGGTGCTAGC
CCCAGACAGAGCAAGGGCAGGTGCGGGGCCATGGCCAGCCACGTGGACCTGCTCACAGAGCTGC
AGCTGCTGGAGAAGGTGCCTACACTGGAGCGCCTGCGCGCAGCCCAGAAGCGCCGGGCTCAGCA
GCTGAAGAAGTGGGCACAGTATGAGCAGGACCTGCTTCATCGCAAGCGCAAGCATGAGCGGAAG
CGTAGCACCGGTGGACGTCGCAAGAAGGTGTCCTTCGAGGCCAGTGTAGCGTTGCTGGAGGCCT
CACTGAGGAATGACGCTGAAGAAGTACGATACTTCCTGAAGAACAAGGTCAGCCCTGATTTGTG
TAATGAGGATGGGCTCACAGCCTTGCACCAGTGCTGCATTGACAACTTCGAAGAGATTGTGAAA
CTGTTGCTCTCCCATGGTGCAAACGTGAACGCCAAGGACAACGAGTTGTGGACACCCTTGCACG
CTGCAGCCACCTGCGGCCACATCAACCTAGTGAAGATCCTCGTTCAGTATGGGGCTGACTTGCT
TGCTGTCAACTCTGATGGGAACATGCCCTATGACCTCTGCGAGGATGAACCCACCCTGGATGTC
ATCGAGACCTGCATGGCGTACCAAGGCATCACCCAGGAGAAAATCAATGAGATGCGAGCAGCTC
CTGAGCAGAAGATGATTTCGGACATCCACTGCATGATAGCAGCCGGCCAGGATCTCGACTGGAT
AGATGGCCAGGGTGCCACACTGCTACACATAGCTGGAGCCAATGGATACCTGCGGGCAGCCGAG
CTCCTCCTGGACCACGGAGTGCGTGTGGACGTCAAGGATTGGGATGGCTGGGAGCCTCTGCATG
CAGCAGCCTTCTGGGGACAGATGCCAATGGCAGAGCTCTTGGTGTCCCATGGAGCTAGTCTCAG
TGCCAGGACATCCATGGATGAGATGCCAATAGACTTGTGTGAGGAGGAGGAATTCAAAGTCCTG
CTGTTGGAGCTTAAACACAAGCATGATGTAATCATGAAGTCCCAGCTGAGACACAAGTCATCCC
TGAGCCGGAGGACATCCAGTGCAGGCAGCCGTGGGAAGGTGGTGCGTCGAGCCAGCCTGTCAGA
CAGAACCAACCTATACCGGAAAGAATATGAAGGAGAGGCCATCTTGTGGCAGCAGCGGAGTGCA
GCTGAGGAACAGCGTACTTCCACCTACAACGGAGACATCAGGGAGACCAGGACAGACCAGGAGA
ACAAGGACCCGAACCCCAGGCTGGAGAAGCCCGTGCTGCTTTCAGAATTCTCTACCAAGATCTC
CCGGGGAGAACTGGATGGGCCTGTGGAGAATGGCCTCCGGGCTCCTGTCAGCACCTACCAGTAT
GCGCTGGCCAACGGGGACATATGGAAGATGCACGAGATACCTGACTACAGCATGGCCTATGGCA
ACCCCGGCATGGCTGATGTCCCCCCACCCTGGAGCGGCTTCAAAGAGCAGAGCCCCCAGACGCT
CCTGGAGCTGAAGAGGCAGAGGGCCGCAGCCAAGTTGCTCAGCCACCCGTTCTTAAGCACCCAC
CTGGGCAGCAGTGTGGCCAGGTCGGGGGAGGGCAGCAGCGAAGGCAAGGCCCCCTTGATCGGAG
GCAGAACTTCCCCCTACAGCAGCAACGGGACCTCGGTGTATTATACGGTCACCAGCGGAGATCC
CCCGCTCTTGAAGTTCAAGGCCCCCATGGAGGAGATGGAGGAGAAAGTTCACGGCTGCTGCCGG
ATCTCCTAATGTCTGTAAACTGGCCGAGAGAGCTGCCTCGGAGAGGGGTCCCCAGAATCCAAAG
CCAGTTCGACAGCCCTGGCTGGGGAGGTGTTGGGGCAGCCGAGGAGAGGTGGGGTCTGCTTTCC
AGAGGAATGCTGACCTTACCTCATGCCCAGCTGCCCATAGCATCTCCACTTCCTCCTGTGCTGC
TTCCTTGCCTCACTCAATGCCTGCATCTGAAGTATAGTGGGCCGACGCACACTGCAGTCTGATC
CAGGGAGGGTGGGGTTGGGATCTCAGTTCTGTGCTTGGTAAAGGCTTCTTAGACAAGGAATAAC
AACACCCCTTCACACACACACACACACACACACACACACACACACACACACACACACACACAGA
GAATCAATTTAGTGTGTGAGAAGGCTACACCTGAGCTCTTGGGATGCAGATGGGGCTGAGAACT
TGTGGGTTATCCCCAGAAGAATGAATTCAAGACAGTCTTGGCACCACTGCCAACTGGCTTCCAC
TTGGGGAGAGGCCTGCTCAGTTGAGACCCACAGCTTTGAAGTCATACCAGGCTGGGACACTATC
ACACCTAGCAGAGACAGGAAGTCCTATGGATTCATAGAAGCCAGGAGTCCATATGGATCAGGTT
TGTGGGTCCAGGCCTTCTCCCCATAGCCTTGCTGAGATCTGCTCTCATGCACATGTCAATAGGA
AGGTGGAGGACTATTCACGGGTCAGGCTGGAAAGTCAGGCCATTCATGCGTAGAAGAAACCAAA
TCTTGTTTTGGTCTTCCCTTGGAAGCGTAGGAGTTAGGTAGGGTACAGCACACAGGTATTTTCC
AAACTGTGTTTGGTAAAAGCCTTCTTTGAGGCTGTAAGATTCCGGGTGGGAGGTAACCGAATTT
GCCTTTTCCCAAGACAGTGTCACAGTTGGGTTTTATTGTCTGGTATTTGAGAAATGAATTTCAT
CAGGAGCTTCTGGGGAGGGGGGGAGGTCTTCCAGGGAAAGGTGCACACACTGCTGAGAACACCA
GGGTTAACGTTGATATGACACAGCATCCTAGCTGGTCTTTGTGGTTTTCATGCTGTTCTGGTCC
GGTCCATTTCAGCCTGCCTTCTTCAGCCTGAGCCATCACCTGGAGCAGTTGAGGCTTGCTTGCA
CCCCACCCTCCCACCTTACACAGTTGAGTCTGCAGAGTGAATGCTCAGGCCCAGGTCCCTCCTA
GCTTTGCCTTTTCTGTAATGCTATGTAAGACGTGTTTGCCAAGCGTCGGCTCCCACCAGGAGGT
CTGAAGGCTCTCAGCCTGCTTTTCCTGGAGTGGTTATGCCCAAAGCTGCAAACTGAGGTGCCCA
TGGCCACTGTCCTGTGCTGCCTTCAGGAGAGCACAGCATGGCTGGAGTTGGCTATCATCCAAGC
TGTACAGCTTTGCTGCCCTTGTCTTCCTGATGCTGGGGAAGGAAGCCCACACCACGTCACGACC
ACACTTTCCCATGAACCCAGTGAAATTCTGCTCCATACACTGGCTCCACCGAAATCTTCTGGCA
TCACAGGCAAGCTATGAATTTGTTCCTTGCTCTGTGCTCTTTTTATTTGTCCTCAAACTACCTC
CTTAGAGCCCTGAGAGAGTCCCTATGTCACTCGGATGTATGGGACAGATGCCCACGTCTTTATG
GCCTCCCAGTGCCACACCCTTAGTGGTTCAGCCTGCCATTTGTTGGTCTCTGTCTCCACTGTGG
CCTTAGGACCGCAGTAGACTAGAGATGAAGCGGGACCTGACTAAATTGGGCAGAGGCTTTATTA
GAACCAGGAGTAGTGTGGGCCCAAGAGCACCCTGGAGGCTACTAGATGCAGAAGGAGGTGCACA
ACACTAGGTCATCCCCCCCCAACTTCAGGACAGATGGGATCTGGCACAGTGATGTAATATAATA
TAACATAAGAGACTAAAGACAGTTTATTGAATCCCTGGGGCCTCGGCTAGGCTCTGCAGTCCAT
GGCTGAAAGAGGAGATGATAAAAACACACACCTGTGGCTTTAGACTTTTAGCTCTGACAGACAC
TGAAATGCCTCTGGAGATGACTTTAGCCACAAGGTGGCCAGTCGGCCCGGCAGCCAGCCATGTA
CTCCTAGGAGTCAGCTGCCCAGGGTTTCTGAGCCCTTTGCGCAGGGGCCAGAGAACAAAGGTAT
TTATTGCCTTCTCTGAGCTGTTCAGGCCATTTCTCCTCCATAGCCAGCACTTCTTCCTGCCTCC
TGGGCCATTCTTCTCTACCTGAGGGGTGGGAGACTCAGCTGCCTCCTCCACGGGAGCTAATACC
AGACAGTGTGGATTCATGGGCTTTTGTTCACGGTTTCCACCAGGGATAAACAAATGTTCCCTGT
TTAGGCTCCAAGTCCCCAGGGCACTTTGTGACTCTTTGGAATATTGAGAGGCACAGTGAGGAAC
AATCTCCAGTGCGTGAGCCAGGGCCACCCACCCATTCACTCATGTGATTGAGGTGTGGAGACAC
ACCAGACATTCGTTTTGGCAGATAATGGACTAGCCGGGCAGCGAAGACTTTGATTTGTTGAAGA
CCGTGGGCATCCCTAGACTCGTCCATGATTCTAATCAGAGTGCCTCCATCCCAGACCAGTGCCC
CCATGCTCTGCAGCACCTGCAGCTCTTAGAGTGTGAATCTCTTGAGCTGGGACATAGCTCTATG
GCTACACCTAGATAACATTTGCCACTAAGTGCAGAGGCTAGATCTCAGGTACCAGGCAGACACT
GTACTGGTCCGTCTAGAGCCTTCAGAGGTAGCCTTCAGGCCAGCATCTATAGAGAACAATATAA
CAGCAGTCTAAGGTCAGTGCCCGGAAGAACCAGAAGTCTGCAATTTGCTGTCAAATACATCCCT
AGCATTTACAGTCCTGTTCTCGTTTTTTACTCATGAATCGTACAGTCTTCTCCCCTACACCAAC
AGTGGATGTTGGGAGGGAGGACAACTACTTCTCTTCAAATTAACCATTTCCATGTGTGTCAGCC
TCTCTGCCTGGAAGGTATGGATCCAAGGGCTAGGAGAAGCCTGGCAAGGTTGACCAGATGGCTC
ACTCCTACCAGGAACCTGTGTCTTGGCAGCCATTCTTGGCAAACTGGAGACATCTATTTCCAAA
CCAGGTGCCCTGCAGTTCCCTGTGAGCTGTCATTCCTTGCCCCCACCCTATGCTCCCCAAACTA
TTAGAAATTGGTAGCTATCACCAGATTGTGAATTTCTGGCCAGTAGCTCAGGGAATTGGAATGA
ATCCTAAACCCAGGTCTATTGAAGACTTTGGGGATATAATTCTTTATCAAATATGCAGCATTAA
TGAAGCTTCACTGCACTGTTTGATTAACTTGTAGATGTTTGGAAAGGTTGCCAGAGTGTGGCCC
CAGCCAGGTGTAGTGGCACACACCTTTCATCCCAGCACAAAGGAGGCAGAGGCATGTGATGTAT
TTCTGAGTTCCAGGCCAGCCAGGGCTACACGGAGAAACCCTGTCTCAAAAAACCAAATAAATAA
AAATAAAATATGGCCTTGGTTGGGTTAACACAGTCTAGCTTTGTAACAATGTGAGACTCTTGAT
TCTTAGTGTTCATTACCCTCTGGTCCTGGCGTTGTCTCCCACCTGCTCTCCCAAAGCAGGATAC
CGGGATGTTTTCCAGAGGGGCCATCCTTATATGATGTCAGGACTGTCTGAACTTTCACTATTTG
TGGCCTGGTGATAGCCTCCCTTCCCCAGGGCACAGAAAAGCCAAGGATCAAATGGCCAGGGTGG
ACAGCTCCACTGAAGTGACCCACTCTTTTTCTAGAAAGCCCAAGGCCTCTCCCTTGTTAGCCAG
AGGGCCTCCTTCTCATGGGCACTTCTAATGCCACTGTGCGGGGCCTGGCTCTGCACACCCTGGA
AAAGTCTGCAGACACCCAGCCCTCCGCAATAATTCACCAGACCAGAAGCCACTGATGTACAGAG
AACACTTAAGAAAAAAAATGTATTTTATGTGAAAAAAAAGTTAAAAACTCTGTATACTGTATCA
GCAGCTTTCTGTAAAAATGGCAATCAAAAGAGTCTAATATATTTAAAACTTTTTTAAAAAAAAT
ATTCTCATGGATCTTTGATATTGTATTGAAGTAGCTTCGTGCCTCCAAGGTGGGGTCTGACCGT
ATCACCAAGGGGCCTGTACCTCTGGAGTTACTCCCAGCTGCCGAGGCCTGTGACGGAATTCGCT
GTTATGGATTTTTAATTAAGATTATTAAATTCCTTTTAATAACA

hide sequence

RefSeq Acc Id:

XM_008762385 ⟹ XP_008760607

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,327,714 - 147,419,658 (+)	NCBI
Rnor_6.0	3	155,165,905 - 155,267,002 (+)	NCBI

Sequence:

show sequence

TACTTGATTTTGTGTGCATGAGTGTTCGCCTGATTCTATATGTGCACCACAGATGTGCCTGGTG
CTAGCAGAAGTCAGAAGGGAACATTGGATCCCCTGCAACTGGAGTTACAGATGGTTGTGAGCTA
GCGTGTGGGTGCTGGGAATCAAACCTGGATCCTCTTTCCGGGCAAACAGCGTTCTCAACAGCTA
AGCCATCTTTGCTGTTCCCTAGTCTTCTATTTCATTCACTAGACCCACAGTTCTCAGTTGTGAA
CAGTTCTGGCCAGTGTCTAGAGGTGTCTCTGTTTGTCAGAGCCAGCTAGGAGGGACCTGGAGAA
GACGTGGCCTCTAGTGCCTCGAGACCAGGAAGGCTATGGGATATTCTGCAGTGCATAGCACAGC
CCCTCACAGCAAAAAATTCCAGGCTCCCAAACGTGAATAGCATCAAGGCTGAGATGGGTTACAC
TCGACCTTGTGTCCTCTGAGGTCAGTGGCTGTATCTAATTCATTCAGCTGTGTCCCCGGTTGTC
AGAGCCAGGGAGACAATCCACATACATTAAAAGAATGAATGAGAACTTGGAAGGCCTCGTGCAC
CCTGGAGTCCCGGGGGTTTGGCTTACAGGATGATTTGAATGGGCAGGAGAGAGATGAGTCTGCA
GGACAACAGCCACTTGGTAATTCAGACCAAAGGCTGTCAGAGCATGCCTACTATTTTCCTTTGG
ACAGGTGCACGGGGGCCTGGATCAGCTGGATCACGGCTGTATTACTGCTGCGTTTGCTTGTGCC
AGACACGAGGCCCATCTAGATCCTCAGGTGGGCTGGGAAAAGGGGCCATAGGTGCTAACAAGGA
ACACCCTGTCAGCTGAGCTCTCGGGATCTGCTAGGCTGGGGCGTAGCTGCCGTCAGCTTCCTGT
TTTTTTCCCTTTCTGGTGGAATGAAGGAAACCCACTGAATGGCTGTTTTTCCACTGACATTTAC
AGCAATGTGATAGGCCTTGGATTAATGAGGTCAAGCTACAGTGTGAAATCTACCCGATAACTTG
GAACCTGGCCAGCAGGAAGACATGCTTGTTTTCTTGGGGCTGTTTGATGTTTGTGAATGGCTTT
GGGCAGGAAGCAGGGGTTATAACTGCTCAAGAGAGGGGTGTGCTTTATGCCCTGGGATTGTGGA
GCTCGGTACTGCCCCTTTTCCTAATTTACTGGAAAAGCTTATTTTAATGTGGACTTTGAAAAGT
CCACAGCTCATTAAAGCAAAAATTCACTTTGAGTCAGGCAGGTTGATGATGACTGGGAACATGG
ACCATAGAGAGGATACCCCCACCCCTCACCCCCGCCATCTCTGCCTCAAGTAGAAGAATTCAGG
CCCCACCATGAGGCTCCAGCCCCTCGGGAGCCCCTGTGCTCCCCTGGCCCCGGGCTCACGGTGC
TAGCCCCAGACAGAGCAAGGGCAGGTGCGGGGCCATGGCCAGCCACGTGGACCTGCTCACAGAG
CTGCAGCTGCTGGAGAAGGTGCCTACACTGGAGCGCCTGCGCGCAGCCCAGAAGCGCCGGGCTC
AGCAGCTGAAGAAGTGGGCACAGTATGAGCAGGACCTGCTTCATCGCAAGCGCAAGCATGAGCG
GAAGCGTAGCACCGGTGGACGTCGCAAGAAGGTGTCCTTCGAGGCCAGTGTAGCGTTGCTGGAG
GCCTCACTGAGGAATGACGCTGAAGAAGTACGATACTTCCTGAAGAACAAGGTCAGCCCTGATT
TGTGTAATGAGGATGGGCTCACAGCCTTGCACCAGTGCTGCATTGACAACTTCGAAGAGATTGT
GAAACTGTTGCTCTCCCATGGTGCAAACGTGAACGCCAAGGACAACGAGTTGTGGACACCCTTG
CACGCTGCAGCCACCTGCGGCCACATCAACCTAGTGAAGATCCTCGTTCAGTATGGGGCTGACT
TGCTTGCTGTCAACTCTGATGGGAACATGCCCTATGACCTCTGCGAGGATGAACCCACCCTGGA
TGTCATCGAGACCTGCATGGCGTACCAAGGCATCACCCAGGAGAAAATCAATGAGATGCGAGCA
GCTCCTGAGCAGAAGATGATTTCGGACATCCACTGCATGATAGCAGCCGGCCAGGATCTCGACT
GGATAGATGGCCAGGGTGCCACACTGCTACACATAGCTGGAGCCAATGGATACCTGCGGGCAGC
CGAGCTCCTCCTGGACCACGGAGTGCGTGTGGACGTCAAGGATTGGGATGGCTGGGAGCCTCTG
CATGCAGCAGCCTTCTGGGGACAGATGCCAATGGCAGAGCTCTTGGTGTCCCATGGAGCTAGTC
TCAGTGCCAGGACATCCATGGATGAGATGCCAATAGACTTGTGTGAGGAGGAGGAATTCAAAGT
CCTGCTGTTGGAGCTTAAACACAAGCATGATGTAATCATGAAGTCCCAGCTGAGACACAAGTCA
TCCCTGAGCCGGAGGACATCCAGTGCAGGCAGCCGTGGGAAGGTGGTGCGTCGAGCCAGCCTGT
CAGACAGAACCAACCTATACCGGAAAGAATATGAAGGAGAGGCCATCTTGTGGCAGCAGCGGAG
TGCAGCTGAGGAACAGCGTACTTCCACCTACAACGGAGACATCAGGGAGACCAGGACAGACCAG
GAGAACAAGGACCCGAACCCCAGGCTGGAGAAGCCCGTGCTGCTTTCAGAATTCTCTACCAAGA
TCTCCCGGGGAGAACTGGATGGGCCTGTGGAGAATGGCCTCCGGGCTCCTGTCAGCACCTACCA
GTATGCGCTGGCCAACGGGGACATATGGAAGATGCACGAGATACCTGACTACAGCATGGCCTAT
GGCAACCCCGGCATGGCTGATGTCCCCCCACCCTGGAGCGGCTTCAAAGAGCAGAGCCCCCAGA
CGCTCCTGGAGCTGAAGAGGCAGAGGGCCGCAGCCAAGTTGCTCAGCCACCCGTTCTTAAGCAC
CCACCTGGGCAGCAGTGTGGCCAGGTCGGGGGAGGGCAGCAGCGAAGGCAAGGCCCCCTTGATC
GGAGGCAGAACTTCCCCCTACAGCAGCAACGGGACCTCGGTGTATTATACGGTCACCAGCGGAG
ATCCCCCGCTCTTGAAGTTCAAGGCCCCCATGGAGGAGATGGAGGAGAAAGTTCACGGCTGCTG
CCGGATCTCCTAATGTCTGTAAACTGGCCGAGAGAGCTGCCTCGGAGAGGGGTCCCCAGAATCC
AAAGCCAGTTCGACAGCCCTGGCTGGGGAGGTGTTGGGGCAGCCGAGGAGAGGTGGGGTCTGCT
TTCCAGAGGAATGCTGACCTTACCTCATGCCCAGCTGCCCATAGCATCTCCACTTCCTCCTGTG
CTGCTTCCTTGCCTCACTCAATGCCTGCATCTGAAGTATAGTGGGCCGACGCACACTGCAGTCT
GATCCAGGGAGGGTGGGGTTGGGATCTCAGTTCTGTGCTTGGTAAAGGCTTCTTAGACAAGGAA
TAACAACACCCCTTCACACACACACACACACACACACACACACACACACACACACACACACACA
CAGAGAATCAATTTAGTGTGTGAGAAGGCTACACCTGAGCTCTTGGGATGCAGATGGGGCTGAG
AACTTGTGGGTTATCCCCAGAAGAATGAATTCAAGACAGTCTTGGCACCACTGCCAACTGGCTT
CCACTTGGGGAGAGGCCTGCTCAGTTGAGACCCACAGCTTTGAAGTCATACCAGGCTGGGACAC
TATCACACCTAGCAGAGACAGGAAGTCCTATGGATTCATAGAAGCCAGGAGTCCATATGGATCA
GGTTTGTGGGTCCAGGCCTTCTCCCCATAGCCTTGCTGAGATCTGCTCTCATGCACATGTCAAT
AGGAAGGTGGAGGACTATTCACGGGTCAGGCTGGAAAGTCAGGCCATTCATGCGTAGAAGAAAC
CAAATCTTGTTTTGGTCTTCCCTTGGAAGCGTAGGAGTTAGGTAGGGTACAGCACACAGGTATT
TTCCAAACTGTGTTTGGTAAAAGCCTTCTTTGAGGCTGTAAGATTCCGGGTGGGAGGTAACCGA
ATTTGCCTTTTCCCAAGACAGTGTCACAGTTGGGTTTTATTGTCTGGTATTTGAGAAATGAATT
TCATCAGGAGCTTCTGGGGAGGGGGGGAGGTCTTCCAGGGAAAGGTGCACACACTGCTGAGAAC
ACCAGGGTTAACGTTGATATGACACAGCATCCTAGCTGGTCTTTGTGGTTTTCATGCTGTTCTG
GTCCGGTCCATTTCAGCCTGCCTTCTTCAGCCTGAGCCATCACCTGGAGCAGTTGAGGCTTGCT
TGCACCCCACCCTCCCACCTTACACAGTTGAGTCTGCAGAGTGAATGCTCAGGCCCAGGTCCCT
CCTAGCTTTGCCTTTTCTGTAATGCTATGTAAGACGTGTTTGCCAAGCGTCGGCTCCCACCAGG
AGGTCTGAAGGCTCTCAGCCTGCTTTTCCTGGAGTGGTTATGCCCAAAGCTGCAAACTGAGGTG
CCCATGGCCACTGTCCTGTGCTGCCTTCAGGAGAGCACAGCATGGCTGGAGTTGGCTATCATCC
AAGCTGTACAGCTTTGCTGCCCTTGTCTTCCTGATGCTGGGGAAGGAAGCCCACACCACGTCAC
GACCACACTTTCCCATGAACCCAGTGAAATTCTGCTCCATACACTGGCTCCACCGAAATCTTCT
GGCATCACAGGCAAGCTATGAATTTGTTCCTTGCTCTGTGCTCTTTTTATTTGTCCTCAAACTA
CCTCCTTAGAGCCCTGAGAGAGTCCCTATGTCACTCGGATGTATGGGACAGATGCCCACGTCTT
TATGGCCTCCCAGTGCCACACCCTTAGTGGTTCAGCCTGCCATTTGTTGGTCTCTGTCTCCACT
GTGGCCTTAGGACCGCAGTAGACTAGAGATGAAGCGGGACCTGACTAAATTGGGCAGAGGCTTT
ATTAGAACCAGGAGTAGTGTGGGCCCAAGAGCACCCTGGAGGCTACTAGATGCAGAAGGAGGTG
CACAACACTAGGTCATCCCCCCCCAACTTCAGGACAGATGGGATCTGGCACAGTGATGTAATAT
AATATAACATAAGAGACTAAAGACAGTTTATTGAATCCCTGGGGCCTCGGCTAGGCTCTGCAGT
CCATGGCTGAAAGAGGAGATGATAAAAACACACACCTGTGGCTTTAGACTTTTAGCTCTGACAG
ACACTGAAATGCCTCTGGAGATGACTTTAGCCACAAGGTGGCCAGTCGGCCCGGCAGCCAGCCA
TGTACTCCTAGGAGTCAGCTGCCCAGGGTTTCTGAGCCCTTTGCGCAGGGGCCAGAGAACAAAG
GTATTTATTGCCTTCTCTGAGCTGTTCAGGCCATTTCTCCTCCATAGCCAGCACTTCTTCCTGC
CTCCTGGGCCATTCTTCTCTACCTGAGGGGTGGGAGACTCAGCTGCCTCCTCCACGGGAGCTAA
TACCAGACAGTGTGGATTCATGGGCTTTTGTTCACGGTTTCCACCAGGGATAAACAAATGTTCC
CTGTTTAGGCTCCAAGTCCCCAGGGCACTTTGTGACTCTTTGGAATATTGAGAGGCACAGTGAG
GAACAATCTCCAGTGCGTGAGCCAGGGCCACCCACCCATTCACTCATGTGATTGAGGTGTGGAG
ACACACCAGACATTCGTTTTGGCAGATAATGGACTAGCCGGGCAGCGAAGACTTTGATTTGTTG
AAGACCGTGGGCATCCCTAGACTCGTCCATGATTCTAATCAGAGTGCCTCCATCCCAGACCAGT
GCCCCCATGCTCTGCAGCACCTGCAGCTCTTAGAGTGTGAATCTCTTGAGCTGGGACATAGCTC
TATGGCTACACCTAGATAACATTTGCCACTAAGTGCAGAGGCTAGATCTCAGGTACCAGGCAGA
CACTGTACTGGTCCGTCTAGAGCCTTCAGAGGTAGCCTTCAGGCCAGCATCTATAGAGAACAAT
ATAACAGCAGTCTAAGGTCAGTGCCCGGAAGAACCAGAAGTCTGCAATTTGCTGTCAAATACAT
CCCTAGCATTTACAGTCCTGTTCTCGTTTTTTACTCATGAATCGTACAGTCTTCTCCCCTACAC
CAACAGTGGATGTTGGGAGGGAGGACAACTACTTCTCTTCAAATTAACCATTTCCATGTGTGTC
AGCCTCTCTGCCTGGAAGGTATGGATCCAAGGGCTAGGAGAAGCCTGGCAAGGTTGACCAGATG
GCTCACTCCTACCAGGAACCTGTGTCTTGGCAGCCATTCTTGGCAAACTGGAGACATCTATTTC
CAAACCAGGTGCCCTGCAGTTCCCTGTGAGCTGTCATTCCTTGCCCCCACCCTATGCTCCCCAA
ACTATTAGAAATTGGTAGCTATCACCAGATTGTGAATTTCTGGCCAGTAGCTCAGGGAATTGGA
ATGAATCCTAAACCCAGGTCTATTGAAGACTTTGGGGATATAATTCTTTATCAAATATGCAGCA
TTAATGAAGCTTCACTGCACTGTTTGATTAACTTGTAGATGTTTGGAAAGGTTGCCAGAGTGTG
GCCCCAGCCAGGTGTAGTGGCACACACCTTTCATCCCAGCACAAAGGAGGCAGAGGCATGTGAT
GTATTTCTGAGTTCCAGGCCAGCCAGGGCTACACGGAGAAACCCTGTCTCAAAAAACCAAATAA
ATAAAAATAAAATATGGCCTTGGTTGGGTTAACACAGTCTAGCTTTGTAACAATGTGAGACTCT
TGATTCTTAGTGTTCATTACCCTCTGGTCCTGGCGTTGTCTCCCACCTGCTCTCCCAAAGCAGG
ATACCGGGATGTTTTCCAGAGGGGCCATCCTTATATGATGTCAGGACTGTCTGAACTTTCACTA
TTTGTGGCCTGGTGATAGCCTCCCTTCCCCAGGGCACAGAAAAGCCAAGGATCAAATGGCCAGG
GTGGACAGCTCCACTGAAGTGACCCACTCTTTTTCTAGAAAGCCCAAGGCCTCTCCCTTGTTAG
CCAGAGGGCCTCCTTCTCATGGGCACTTCTAATGCCACTGTGCGGGGCCTGGCTCTGCACACCC
TGGAAAAGTCTGCAGACACCCAGCCCTCCGCAATAATTCACCAGACCAGAAGCCACTGATGTAC
AGAGAACACTTAAGAAAAAAAATGTATTTTATGTGAAAAAAAAGTTAAAAACTCTGTATACTGT
ATCAGCAGCTTTCTGTAAAAATGGCAATCAAAAGAGTCTAATATATTTAAAACTTTTTTAAAAA
AAATATTCTCATGGATCTTTGATATTGTATTGAAGTAGCTTCGTGCCTCCAAGGTGGGGTCTGA
CCGTATCACCAAGGGGCCTGTACCTCTGGAGTTACTCCCAGCTGCCGAGGCCTGTGACGGAATT
CGCTGTTATGGATTTTTAATTAAGATTATTAAATTCCTTTTAATAACA

hide sequence

RefSeq Acc Id:

XM_017592039 ⟹ XP_017447528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,324,066 - 147,415,288 (+)	NCBI
Rnor_6.0	3	155,160,912 - 155,262,579 (+)	NCBI

Sequence:

show sequence

GGAGGAGTCAAGAGGCGGCGCGGTGGCTCGCTACCAAGCAGAGCTGGCTCTGTCGCCGCACCAC
CAGCTGCGGCTCTGGGACCTGCGGATTGAGCCGGGGCTGGGAGCCGCCCGGGGCAGGGCTCGAG
AGAGCGGGCCCCACCATGAGGCTCCAGCCCCTCGGGAGCCCCTGTGCTCCCCTGGCCCCGGGCT
CACGGTGCTAGCCCCAGACAGAGCAAGGGCAGGTGCGGGGCCATGGCCAGCCACGTGGACCTGC
TCACAGAGCTGCAGCTGCTGGAGAAGGTGCCTACACTGGAGCGCCTGCGCGCAGCCCAGAAGCG
CCGGGCTCAGCAGCTGAAGAAGTGGGCACAGTATGAGCAGGACCTGCTTCATCGCAAGCGCAAG
CATGAGCGGAAGCGTAGCACCGGTGGACGTCGCAAGAAGGTGTCCTTCGAGGCCAGTGTAGCGT
TGCTGGAGGCCTCACTGAGGAATGACGCTGAAGAAGTACGATACTTCCTGAAGAACAAGGTCAG
CCCTGATTTGTGTAATGAGGATGGGCTCACAGCCTTGCACCAGTGCTGCATTGACAACTTCGAA
GAGATTGTGAAACTGTTGCTCTCCCATGGTGCAAACGTGAACGCCAAGGACAACGAGTTGTGGA
CACCCTTGCACGCTGCAGCCACCTGCGGCCACATCAACCTAGTGAAGATCCTCGTTCAGTATGG
GGCTGACTTGCTTGCTGTCAACTCTGATGGGAACATGCCCTATGACCTCTGCGAGGATGAACCC
ACCCTGGATGTCATCGAGACCTGCATGGCGTACCAAGGCATCACCCAGGAGAAAATCAATGAGA
TGCGAGCAGCTCCTGAGCAGAAGATGATTTCGGACATCCACTGCATGATAGCAGCCGGCCAGGA
TCTCGACTGGATAGATGGCCAGGGTGCCACACTGCTACACATAGCTGGAGCCAATGGATACCTG
CGGGCAGCCGAGCTCCTCCTGGACCACGGAGTGCGTGTGGACGTCAAGGATTGGGATGGCTGGG
AGCCTCTGCATGCAGCAGCCTTCTGGGGACAGATGCCAATGGCAGAGCTCTTGGTGTCCCATGG
AGCTAGTCTCAGTGCCAGGACATCCATGGATGAGATGCCAATAGACTTGTGTGAGGAGGAGGAA
TTCAAAGTCCTGCTGTTGGAGCTTAAACACAAGCATGATGTAATCATGAAGTCCCAGCTGAGAC
ACAAGTCATCCCTGAGCCGGAGGACATCCAGTGCAGGCAGCCGTGGGTGGTGCGTCGAGCCAGC
CTGTCAGACAGAACCAACCTATACCGGAAAGAATATGAAGGAGAGGCCATCTTGTGGCAGCAGC
GGAGTGCAGCTGAGGAACAGCGTACTTCCACCTACAACGGAGACATCAGGGAGACCAGGACAGA
CCAGGAGAACAAGGACCCGAACCCCAGGCTGGAGAAGCCCGTGCTGCTTTCAGAATTCTCTACC
AAGATCTCCCGGGGAGAACTGGATGGGCCTGTGGAGAATGGCCTCCGGGCTCCTGTCAGCACCT
ACCAGTATGCGCTGGCCAACGGGGACATATGGAAGATGCACGAGATACCTGACTACAGCATGGC
CTATGGCAACCCCGGCATGGCTGATGTCCCCCCACCCTGGAGCGGCTTCAAAGAGCAGAGCCCC
CAGACGCTCCTGGAGCTGAAGAGGCAGAGGGCCGCAGCCAAGTTGCTCAGCCACCCGTTCTTAA
GCACCCACCTGGGCAGCAGTGTGGCCAGGTCGGGGGAGGGCAGCA

hide sequence

RefSeq Acc Id:

XM_039105844 ⟹ XP_038961772

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,325,549 - 147,419,658 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178001	(Get FASTA)	NCBI Sequence Viewer
	XP_008760605	(Get FASTA)	NCBI Sequence Viewer
	XP_008760606	(Get FASTA)	NCBI Sequence Viewer
	XP_008760607	(Get FASTA)	NCBI Sequence Viewer
	XP_017447528	(Get FASTA)	NCBI Sequence Viewer
	XP_038961772	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001178001 ⟸ NM_001191072

- UniProtKB:

D4AA72 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASHVDLLTELQLLEKVPTLERLRAAQKRRAQQLKKWAQYEQDLLHRKRKHERKRSTGGRRKKV
SFEASVALLEASLRNDAEEVRYFLKNKVSPDLCNEDGLTALHQCCIDNFEEIVKLLLSHGANVN
AKDNELWTPLHAAATCGHINLVKILVQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGI
TQEKINEMRAAPEQKMISDIHCMIAAGQDLDWIDGQGATLLHIAGANGYLRAAELLLDHGVRVD
VKDWDGWEPLHAAAFWGQMPMAELLVSHGASLSARTSMDEMPIDLCEEEEFKVLLLELKHKHDV
IMKSQLRHKSSLSRRTSSAGSRGKVVRRASLSDRTNLYRKEYEGEAILWQQRSAAEEQRTSTYN
GDIRETRTDQENKDPNPRLEKPVLLSEFSTKISRGELDGPVENGLRAPVSTYQYALANGDIWKM
HEIPDYSMAYGNPGMADVPPPWSGFKEQSPQTLLELKRQRAAAKLLSHPFLSTHLGSSVARSGE
GSSEGKAPLIGGRTSPYSSNGTSVYYTVTSGDPPLLKFKAPMEEMEEKVHGCCRIS

hide sequence

RefSeq Acc Id:	XP_008760605 ⟸ XM_008762383
- Peptide Label:	isoform X1
- UniProtKB:	D4AA72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASHVDLLTELQLLEKVPTLERLRAAQKRRAQQLKKWAQYEQDLLHRKRKHERKRSTGGRRKKV SFEASVALLEASLRNDAEEVRYFLKNKVSPDLCNEDGLTALHQCCIDNFEEIVKLLLSHGANVN AKDNELWTPLHAAATCGHINLVKILVQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGI TQEKINEMRAAPEQKMISDIHCMIAAGQDLDWIDGQGATLLHIAGANGYLRAAELLLDHGVRVD VKDWDGWEPLHAAAFWGQMPMAELLVSHGASLSARTSMDEMPIDLCEEEEFKVLLLELKHKHDV IMKSQLRHKSSLSRRTSSAGSRGKVVRRASLSDRTNLYRKEYEGEAILWQQRSAAEEQRTSTYN GDIRETRTDQENKDPNPRLEKPVLLSEFSTKISRGELDGPVENGLRAPVSTYQYALANGDIWKM HEIPDYSMAYGNPGMADVPPPWSGFKEQSPQTLLELKRQRAAAKLLSHPFLSTHLGSSVARSGE GSSEGKAPLIGGRTSPYSSNGTSVYYTVTSGDPPLLKFKAPMEEMEEKVHGCCRIS hide sequence

RefSeq Acc Id:	XP_008760606 ⟸ XM_008762384
- Peptide Label:	isoform X1
- UniProtKB:	D4AA72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASHVDLLTELQLLEKVPTLERLRAAQKRRAQQLKKWAQYEQDLLHRKRKHERKRSTGGRRKKV SFEASVALLEASLRNDAEEVRYFLKNKVSPDLCNEDGLTALHQCCIDNFEEIVKLLLSHGANVN AKDNELWTPLHAAATCGHINLVKILVQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGI TQEKINEMRAAPEQKMISDIHCMIAAGQDLDWIDGQGATLLHIAGANGYLRAAELLLDHGVRVD VKDWDGWEPLHAAAFWGQMPMAELLVSHGASLSARTSMDEMPIDLCEEEEFKVLLLELKHKHDV IMKSQLRHKSSLSRRTSSAGSRGKVVRRASLSDRTNLYRKEYEGEAILWQQRSAAEEQRTSTYN GDIRETRTDQENKDPNPRLEKPVLLSEFSTKISRGELDGPVENGLRAPVSTYQYALANGDIWKM HEIPDYSMAYGNPGMADVPPPWSGFKEQSPQTLLELKRQRAAAKLLSHPFLSTHLGSSVARSGE GSSEGKAPLIGGRTSPYSSNGTSVYYTVTSGDPPLLKFKAPMEEMEEKVHGCCRIS hide sequence

RefSeq Acc Id:	XP_008760607 ⟸ XM_008762385
- Peptide Label:	isoform X1
- UniProtKB:	D4AA72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASHVDLLTELQLLEKVPTLERLRAAQKRRAQQLKKWAQYEQDLLHRKRKHERKRSTGGRRKKV SFEASVALLEASLRNDAEEVRYFLKNKVSPDLCNEDGLTALHQCCIDNFEEIVKLLLSHGANVN AKDNELWTPLHAAATCGHINLVKILVQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGI TQEKINEMRAAPEQKMISDIHCMIAAGQDLDWIDGQGATLLHIAGANGYLRAAELLLDHGVRVD VKDWDGWEPLHAAAFWGQMPMAELLVSHGASLSARTSMDEMPIDLCEEEEFKVLLLELKHKHDV IMKSQLRHKSSLSRRTSSAGSRGKVVRRASLSDRTNLYRKEYEGEAILWQQRSAAEEQRTSTYN GDIRETRTDQENKDPNPRLEKPVLLSEFSTKISRGELDGPVENGLRAPVSTYQYALANGDIWKM HEIPDYSMAYGNPGMADVPPPWSGFKEQSPQTLLELKRQRAAAKLLSHPFLSTHLGSSVARSGE GSSEGKAPLIGGRTSPYSSNGTSVYYTVTSGDPPLLKFKAPMEEMEEKVHGCCRIS hide sequence

RefSeq Acc Id:

XP_017447528 ⟸ XM_017592039

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASHVDLLTELQLLEKVPTLERLRAAQKRRAQQLKKWAQYEQDLLHRKRKHERKRSTGGRRKKV
SFEASVALLEASLRNDAEEVRYFLKNKVSPDLCNEDGLTALHQCCIDNFEEIVKLLLSHGANVN
AKDNELWTPLHAAATCGHINLVKILVQYGADLLAVNSDGNMPYDLCEDEPTLDVIETCMAYQGI
TQEKINEMRAAPEQKMISDIHCMIAAGQDLDWIDGQGATLLHIAGANGYLRAAELLLDHGVRVD
VKDWDGWEPLHAAAFWGQMPMAELLVSHGASLSARTSMDEMPIDLCEEEEFKVLLLELKHKHDV
IMKSQLRHKSSLSRRTSSAGSRGWCVEPACQTEPTYTGKNMKERPSCGSSGVQLRNSVLPPTTE
TSGRPGQTRRTRTRTPGWRSPCCFQNSLPRSPGENWMGLWRMASGLLSAPTSMRWPTGTYGRCT
RYLTTAWPMATPAWLMSPHPGAASKSRAPRRSWS

hide sequence

RefSeq Acc Id:

ENSRNOP00000021133 ⟸ ENSRNOT00000021133

RefSeq Acc Id:	XP_038961772 ⟸ XM_039105844
- Peptide Label:	isoform X1
- UniProtKB:	D4AA72 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AA72-F1-model_v2	AlphaFold	D4AA72	1-568	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692622

Promoter ID:

EPDNEW_R3147

Type:

multiple initiation site

Name:

Ppp1r16b_1

Description:

protein phosphatase 1, regulatory subunit 16B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	155,160,951 - 155,161,011	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589460	AgrOrtholog
BioCyc Gene	G2FUF-47004	BioCyc
Ensembl Genes	ENSRNOG00000015614	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021133	ENTREZGENE
	ENSRNOP00000021133.4	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021133	ENTREZGENE
	ENSRNOT00000021133.8	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	Pase-1_reg_su_16AB_euk	UniProtKB/TrEMBL
KEGG Report	rno:680616	UniProtKB/TrEMBL
NCBI Gene	680616	ENTREZGENE
PANTHER	PROTEIN PHOSPHATASE 1 REGULATORY INHIBITOR SUBUNIT 16B	UniProtKB/TrEMBL
	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
PhenoGen	Ppp1r16b	PhenoGen
PIRSF	PP1_16AB_vert	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	D4AA72	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-10-18	Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Ppp1r16b	protein phosphatase 1, regulatory (inhibitor) subunit 16B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Ppp1r16b	protein phosphatase 1, regulatory (inhibitor) subunit 16B	LOC680616	similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680616	similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)	LOC684098	similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)	Data Merged	1643240	APPROVED
2006-11-20	LOC684098	similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC680616	similar to Protein phosphatase 1 regulatory inhibitor subunit 16B (TGF-beta-inhibited membrane-associated protein) (CAAX box protein TIMAP)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar