Tgap1-ps1 (GTPase activating protein testicular GAP1, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tgap1-ps1 (GTPase activating protein testicular GAP1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Tgap1-ps1
Name: GTPase activating protein testicular GAP1, pseudogene 1
RGD ID: 1589449
Description:
Type: pseudo
RefSeq Status: VALIDATED
Previously known as: LOC100911521; LOC102550773; LOC680627; LOC691623; rho GTPase-activating protein 20-like; similar to GTPase activating protein testicular GAP1; similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase); uncharacterized LOC100911521
Related Functional Gene: Tgap1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8129,351,396 - 9,385,891 (-)NCBIGRCr8
mRatBN7.2124,314,934 - 4,349,420 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx124,889,394 - 4,923,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0125,512,581 - 5,547,163 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0124,015,975 - 4,050,441 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.016518,565 - 624,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.016568,520 - 620,406 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41638,974,830 - 39,007,214 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Tgap1-ps1
116 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_131943
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8129,351,396 - 9,385,891 (-)NCBI
mRatBN7.2124,314,934 - 4,349,420 (-)NCBI
Protein Sequences
GenBank Protein AAI66500 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20255 BioCyc
NCBI Gene 680627 ENTREZGENE
PhenoGen Tgap1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tgap1-ps1  GTPase activating protein testicular GAP1, pseudogene 1  LOC680627  similar to GTPase activating protein testicular GAP1  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC680627  similar to GTPase activating protein testicular GAP1  LOC102550773  rho GTPase-activating protein 20-like  Data merged from RGD:7561777 737654 PROVISIONAL
2015-07-29 LOC680627  similar to GTPase activating protein testicular GAP1  LOC691623  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)  Data merged from RGD:1597270 737654 PROVISIONAL
2015-05-22 LOC680627  similar to GTPase activating protein testicular GAP1  LOC100911521  uncharacterized LOC100911521  Data merged from RGD:6492342 737654 APPROVED
2013-12-17 LOC102550773  rho GTPase-activating protein 20-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911521  uncharacterized LOC100911521      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC691623  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)  LOC691623  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)  Gene reactivated at release of RGSC5.0 assembly 2298974 REACTIVATED
2008-01-09 LOC691623  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)  LOC686996  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)  Data merged from RGD:1591225 1643240 APPROVED
2006-11-20 LOC691623  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686996  similar to RalA-binding protein 1 (RalBP1) (Ral-interacting protein 1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680627  similar to GTPase activating protein testicular GAP1      Symbol and Name status set to provisional 70820 PROVISIONAL