Golm1 (golgi membrane protein 1) - Rat Genome Database

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Gene: Golm1 (golgi membrane protein 1) Rattus norvegicus
Analyze
Symbol: Golm1
Name: golgi membrane protein 1
RGD ID: 1589384
Description: Predicted to act upstream of or within nucleus organization and regulation of lipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GOLM1 (golgi membrane protein 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC680692; similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,995,925 - 5,044,329 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl174,996,104 - 5,034,057 (+)Ensembl
Rnor_6.0175,373,095 - 5,411,186 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,382,034 - 5,409,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,597,770 - 7,635,854 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,911,513 - 10,938,960 (+)NCBIRGSC3.4rn4RGSC3.4
Celera175,116,711 - 5,154,795 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16502470   PMID:18830387   PMID:23376485  


Genomics

Comparative Map Data
Golm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,995,925 - 5,044,329 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl174,996,104 - 5,034,057 (+)Ensembl
Rnor_6.0175,373,095 - 5,411,186 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,382,034 - 5,409,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,597,770 - 7,635,854 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,911,513 - 10,938,960 (+)NCBIRGSC3.4rn4RGSC3.4
Celera175,116,711 - 5,154,795 (+)NCBICelera
Cytogenetic Map17p14NCBI
GOLM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,026,146 - 86,100,149 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl986,026,146 - 86,100,173 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,641,061 - 88,715,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36987,830,876 - 87,904,903 (-)NCBINCBI36hg18NCBI36
Build 34985,870,612 - 85,944,637NCBI
Celera959,212,998 - 59,287,045 (-)NCBI
Cytogenetic Map9q21.33NCBI
HuRef958,466,347 - 58,492,566 (-)NCBIHuRef
HuRef958,496,898 - 58,539,236 (-)NCBIHuRef
CHM1_1988,787,586 - 88,861,938 (-)NCBICHM1_1
T2T-CHM13v2.0998,176,673 - 98,251,783 (-)NCBI
Golm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,782,810 - 59,823,598 (-)NCBIGRCm39mm39
GRCm39 Ensembl1359,782,440 - 59,823,625 (-)Ensembl
GRCm381359,634,996 - 59,675,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,634,626 - 59,675,811 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,736,357 - 59,777,145 (-)NCBIGRCm37mm9NCBIm37
MGSCv361359,644,619 - 59,685,407 (-)NCBImm8
Celera1360,691,172 - 60,731,889 (-)NCBICelera
Cytogenetic Map13B2NCBI
Golm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,439,578 - 1,496,371 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,434,759 - 1,497,916 (+)NCBIChiLan1.0ChiLan1.0
GOLM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1983,005,832 - 83,092,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl983,005,832 - 83,080,202 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0938,823,820 - 38,910,984 (+)NCBIMhudiblu_PPA_v0panPan3
GOLM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,609,224 - 73,654,280 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,546,172 - 73,652,370 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,363,157 - 74,417,043 (+)NCBI
ROS_Cfam_1.0173,908,129 - 73,962,465 (+)NCBI
ROS_Cfam_1.0 Ensembl173,851,889 - 73,962,465 (+)Ensembl
UMICH_Zoey_3.1173,716,955 - 73,769,756 (+)NCBI
UNSW_CanFamBas_1.0173,483,436 - 73,537,750 (+)NCBI
UU_Cfam_GSD_1.0174,189,817 - 74,242,695 (+)NCBI
Golm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,221,183 - 120,274,096 (+)NCBI
SpeTri2.0NW_0049366801,463,991 - 1,528,322 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1029,118,314 - 29,219,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11029,117,578 - 29,219,024 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,164,037 - 33,263,674 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,706,865 - 96,778,687 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,708,548 - 96,779,065 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603885,059,864 - 85,130,694 (-)NCBIVero_WHO_p1.0
Golm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248099,486,724 - 9,534,333 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248099,485,832 - 9,555,889 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BI286519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,032,015 - 5,032,212 (+)MAPPERmRatBN7.2
Rnor_6.0175,409,155 - 5,409,351NCBIRnor6.0
Rnor_5.0177,633,823 - 7,634,019UniSTSRnor5.0
RGSC_v3.41710,938,634 - 10,938,830UniSTSRGSC3.4
Celera175,152,764 - 5,152,960UniSTS
RH 3.4 Map1773.2UniSTS
Cytogenetic Map17p14UniSTS
BI286630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,022,600 - 5,022,810 (+)MAPPERmRatBN7.2
Rnor_6.0175,399,740 - 5,399,949NCBIRnor6.0
Rnor_5.0177,624,408 - 7,624,617UniSTSRnor5.0
RGSC_v3.41710,929,219 - 10,929,428UniSTSRGSC3.4
Celera175,143,349 - 5,143,558UniSTS
RH 3.4 Map1773.2UniSTS
Cytogenetic Map17p14UniSTS
BG381403  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,025,586 - 5,025,759 (+)MAPPERmRatBN7.2
Rnor_6.0175,402,726 - 5,402,898NCBIRnor6.0
Rnor_5.0177,627,394 - 7,627,566UniSTSRnor5.0
RGSC_v3.41710,932,205 - 10,932,377UniSTSRGSC3.4
Celera175,146,335 - 5,146,507UniSTS
RH 3.4 Map1772.6UniSTS
Cytogenetic Map17p14UniSTS
AA891427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2175,032,093 - 5,032,276 (+)MAPPERmRatBN7.2
Rnor_6.0175,409,233 - 5,409,415NCBIRnor6.0
Rnor_5.0177,633,901 - 7,634,083UniSTSRnor5.0
RGSC_v3.41710,938,712 - 10,938,894UniSTSRGSC3.4
Celera175,152,842 - 5,153,024UniSTS
RH 3.4 Map1773.2UniSTS
Cytogenetic Map17p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:21
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000037597
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 47 39 19 39 74 35 29 11
Low 10 2 2 8 11 12 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000037597   ⟹   ENSRNOP00000029929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,996,104 - 5,034,057 (+)Ensembl
Rnor_6.0 Ensembl175,382,034 - 5,409,038 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115015   ⟹   ENSRNOP00000080545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,996,104 - 5,034,057 (+)Ensembl
RefSeq Acc Id: XM_001056825   ⟹   XP_001056825
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,995,925 - 5,034,048 (+)NCBI
Rnor_6.0175,373,095 - 5,411,186 (+)NCBI
Rnor_5.0177,597,770 - 7,635,854 (+)NCBI
RGSC_v3.41710,911,513 - 10,938,960 (+)RGD
Sequence:
RefSeq Acc Id: XM_039096415   ⟹   XP_038952343
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,995,925 - 5,042,520 (+)NCBI
RefSeq Acc Id: XM_039096416   ⟹   XP_038952344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,996,109 - 5,034,048 (+)NCBI
RefSeq Acc Id: XM_039096417   ⟹   XP_038952345
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,996,427 - 5,034,048 (+)NCBI
RefSeq Acc Id: XR_005495817
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,995,925 - 5,044,329 (+)NCBI
RefSeq Acc Id: XR_005495818
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,995,925 - 5,044,329 (+)NCBI
Protein Sequences
Protein RefSeqs XP_001056825 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952345 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001056825   ⟸   XM_001056825
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000029929   ⟸   ENSRNOT00000037597
RefSeq Acc Id: XP_038952343   ⟸   XM_039096415
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038952344   ⟸   XM_039096416
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038952345   ⟸   XM_039096417
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000080545   ⟸   ENSRNOT00000115015

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEL2-F1-model_v2 AlphaFold D4AEL2 1-397 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700279
Promoter ID:EPDNEW_R10800
Type:single initiation site
Name:Golm1_1
Description:golgi membrane protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0175,382,106 - 5,382,166EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589384 AgrOrtholog
BioCyc Gene G2FUF-10411 BioCyc
Ensembl Genes ENSRNOG00000018400 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029929.6 UniProtKB/TrEMBL
  ENSRNOP00000080545 ENTREZGENE
  ENSRNOP00000080545.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037597.7 UniProtKB/TrEMBL
  ENSRNOT00000115015 ENTREZGENE
  ENSRNOT00000115015.1 UniProtKB/TrEMBL
InterPro GOLM1 UniProtKB/TrEMBL
  GOLM1/CASC4 UniProtKB/TrEMBL
NCBI Gene 680692 ENTREZGENE
PANTHER PTHR15896 UniProtKB/TrEMBL
  PTHR15896:SF8 UniProtKB/TrEMBL
PhenoGen Golm1 PhenoGen
PRINTS GOLM1CASC4 UniProtKB/TrEMBL
UniProt A0A8I5ZPY1_RAT UniProtKB/TrEMBL
  D4AEL2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-26 Golm1  golgi membrane protein 1  LOC680692  similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC680692  similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73)      Symbol and Name status set to provisional 70820 PROVISIONAL