Arhgap10 (Rho GTPase activating protein 10) - Rat Genome Database

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Gene: Arhgap10 (Rho GTPase activating protein 10) Rattus norvegicus
Analyze
Symbol: Arhgap10
Name: Rho GTPase activating protein 10
RGD ID: 1588859
Description: Predicted to enable GTPase activator activity. Predicted to be involved in cytoskeleton organization and negative regulation of apoptotic process. Predicted to be located in endosome membrane. Predicted to be active in cytosol. Orthologous to human ARHGAP10 (Rho GTPase activating protein 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC688429; rho GTPase-activating protein 10; similar to Rho GTPase activating protein 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81947,352,783 - 47,614,532 (+)NCBIGRCr8
mRatBN7.21930,448,572 - 30,710,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1930,448,637 - 30,710,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1937,281,593 - 37,548,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01937,935,464 - 38,202,341 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01940,184,555 - 40,454,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01934,138,978 - 34,406,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1934,139,997 - 34,402,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01945,021,122 - 45,282,107 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41932,261,771 - 32,521,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1929,930,167 - 30,186,673 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
endosome membrane  (ISO)
synapse  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11238453   PMID:15471851  


Genomics

Comparative Map Data
Arhgap10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81947,352,783 - 47,614,532 (+)NCBIGRCr8
mRatBN7.21930,448,572 - 30,710,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1930,448,637 - 30,710,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1937,281,593 - 37,548,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01937,935,464 - 38,202,341 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01940,184,555 - 40,454,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01934,138,978 - 34,406,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1934,139,997 - 34,402,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01945,021,122 - 45,282,107 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41932,261,771 - 32,521,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1929,930,167 - 30,186,673 (+)NCBICelera
Cytogenetic Map19q11NCBI
ARHGAP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384147,732,088 - 148,072,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4147,732,063 - 148,072,776 (+)EnsemblGRCh38hg38GRCh38
GRCh374148,653,239 - 148,993,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364148,872,903 - 149,213,377 (+)NCBINCBI36Build 36hg18NCBI36
Build 344149,011,057 - 149,351,531NCBI
Celera4145,974,548 - 146,315,244 (+)NCBICelera
Cytogenetic Map4q31.23NCBI
HuRef4144,380,575 - 144,721,071 (+)NCBIHuRef
CHM1_14148,632,138 - 148,972,573 (+)NCBICHM1_1
T2T-CHM13v2.04151,056,194 - 151,396,701 (+)NCBIT2T-CHM13v2.0
Arhgap10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39877,976,995 - 78,244,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl877,976,995 - 78,244,582 (-)EnsemblGRCm39 Ensembl
GRCm38877,250,366 - 77,517,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl877,250,366 - 77,517,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv37879,774,265 - 80,041,806 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36880,146,991 - 80,413,857 (-)NCBIMGSCv36mm8
Celera881,539,175 - 81,809,141 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map836.6NCBI
Arhgap10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554712,804,162 - 3,052,565 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554712,757,063 - 3,052,565 (+)NCBIChiLan1.0ChiLan1.0
ARHGAP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23145,588,474 - 145,949,906 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14145,953,932 - 146,312,254 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04140,054,130 - 140,412,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14151,726,549 - 152,066,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4151,726,549 - 152,066,977 (+)Ensemblpanpan1.1panPan2
ARHGAP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11546,064,489 - 46,382,079 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1546,070,312 - 46,381,839 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1546,457,487 - 46,775,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01546,738,153 - 47,057,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1546,743,784 - 47,057,425 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11546,006,428 - 46,324,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01546,103,535 - 46,422,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01546,412,616 - 46,730,944 (+)NCBIUU_Cfam_GSD_1.0
Arhgap10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530144,036,353 - 44,330,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365351,473,736 - 1,767,419 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365351,473,693 - 1,767,437 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl880,675,002 - 81,024,452 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1880,674,999 - 81,024,501 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2885,799,351 - 86,042,332 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1794,233,257 - 94,568,042 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl794,216,032 - 94,568,502 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603773,923,677 - 74,275,881 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248536,360,119 - 6,424,247 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgap10
1820 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:76
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000017867
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat

Markers in Region
D19Got15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,462,251 - 30,462,407 (+)MAPPERmRatBN7.2
Rnor_6.01934,153,725 - 34,153,880NCBIRnor6.0
Rnor_5.01945,034,585 - 45,034,740UniSTSRnor5.0
RGSC_v3.41932,275,443 - 32,275,598RGDRGSC3.4
RGSC_v3.41932,275,443 - 32,275,598UniSTSRGSC3.4
RGSC_v3.11932,280,324 - 32,280,479RGD
Celera1929,943,781 - 29,943,936UniSTS
RH 3.4 Map19229.3RGD
RH 3.4 Map19229.3UniSTS
RH 2.0 Map19339.2RGD
Cytogenetic Map19q11UniSTS
D19Got108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,682,460 - 30,682,659 (+)MAPPERmRatBN7.2
Rnor_6.01934,373,703 - 34,373,901NCBIRnor6.0
Rnor_5.01945,254,457 - 45,254,655UniSTSRnor5.0
RGSC_v3.41932,494,196 - 32,494,394UniSTSRGSC3.4
Celera1930,159,693 - 30,159,899UniSTS
Cytogenetic Map19q11UniSTS
RH128161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,710,078 - 30,710,264 (+)MAPPERmRatBN7.2
Rnor_6.01934,402,706 - 34,402,891NCBIRnor6.0
Rnor_5.01945,281,873 - 45,282,058UniSTSRnor5.0
RGSC_v3.41932,522,183 - 32,522,368UniSTSRGSC3.4
Celera1930,186,943 - 30,187,128UniSTS
RH 3.4 Map19235.6UniSTS
Cytogenetic Map19q11UniSTS
BI296164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,489,233 - 30,489,384 (+)MAPPERmRatBN7.2
Rnor_6.01934,180,996 - 34,181,146NCBIRnor6.0
Rnor_5.01945,061,413 - 45,061,563UniSTSRnor5.0
RGSC_v3.41932,301,735 - 32,301,885UniSTSRGSC3.4
Celera1929,971,072 - 29,971,222UniSTS
RH 3.4 Map19225.2UniSTS
Cytogenetic Map19q11UniSTS
RH139267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,511,961 - 30,512,089 (+)MAPPERmRatBN7.2
Rnor_6.01934,204,203 - 34,204,330NCBIRnor6.0
Rnor_5.01945,084,621 - 45,084,748UniSTSRnor5.0
RGSC_v3.41932,324,466 - 32,324,593UniSTSRGSC3.4
Celera1929,992,287 - 29,992,414UniSTS
RH 3.4 Map19234.8UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic MapXq12UniSTS
AA800507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21930,446,792 - 30,446,962 (+)MAPPERmRatBN7.2
Rnor_6.01934,138,170 - 34,138,339NCBIRnor6.0
Rnor_5.01945,019,444 - 45,019,613UniSTSRnor5.0
RGSC_v3.41932,259,718 - 32,259,887UniSTSRGSC3.4
Celera1929,928,156 - 29,928,325UniSTS
RH 3.4 Map19251.1UniSTS
Cytogenetic Map19q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 141 74 18 30 18 36 45 90 112 145 40 24
Low 19 153 129 39 129 160 17
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017867   ⟹   ENSRNOP00000017867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1930,448,637 - 30,710,312 (+)Ensembl
Rnor_6.0 Ensembl1934,139,997 - 34,402,436 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099142   ⟹   ENSRNOP00000078630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1930,448,637 - 30,710,312 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104023   ⟹   ENSRNOP00000090450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1930,448,659 - 30,710,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111331   ⟹   ENSRNOP00000076625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1930,448,659 - 30,710,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111579   ⟹   ENSRNOP00000089391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1930,448,659 - 30,710,313 (+)Ensembl
RefSeq Acc Id: NM_001109501   ⟹   NP_001102971
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,857 - 47,614,028 (+)NCBI
mRatBN7.21930,448,634 - 30,709,809 (+)NCBI
Rnor_6.01934,139,997 - 34,402,436 (+)NCBI
Rnor_5.01945,021,122 - 45,282,107 (+)NCBI
RGSC_v3.41932,261,771 - 32,521,913 (+)RGD
Celera1929,930,167 - 30,186,673 (+)RGD
Sequence:
RefSeq Acc Id: XM_008772531   ⟹   XP_008770753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,798 - 47,614,532 (+)NCBI
mRatBN7.21930,448,824 - 30,709,742 (+)NCBI
Rnor_6.01934,139,957 - 34,402,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601359   ⟹   XP_017456848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,786 - 47,559,179 (+)NCBI
mRatBN7.21930,448,574 - 30,654,933 (+)NCBI
Rnor_6.01934,139,957 - 34,346,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097986   ⟹   XP_038953914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,798 - 47,614,532 (+)NCBI
mRatBN7.21930,448,578 - 30,710,315 (+)NCBI
RefSeq Acc Id: XM_039097987   ⟹   XP_038953915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,797 - 47,614,532 (+)NCBI
mRatBN7.21930,448,578 - 30,710,315 (+)NCBI
RefSeq Acc Id: XM_039097988   ⟹   XP_038953916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,368,508 - 47,614,532 (+)NCBI
mRatBN7.21930,459,875 - 30,710,315 (+)NCBI
RefSeq Acc Id: XM_039097989   ⟹   XP_038953917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,714 - 47,614,532 (+)NCBI
mRatBN7.21930,512,497 - 30,710,313 (+)NCBI
RefSeq Acc Id: XM_039097990   ⟹   XP_038953918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,847 - 47,614,532 (+)NCBI
mRatBN7.21930,512,629 - 30,710,315 (+)NCBI
RefSeq Acc Id: XM_039097991   ⟹   XP_038953919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,843 - 47,614,532 (+)NCBI
mRatBN7.21930,512,793 - 30,710,315 (+)NCBI
RefSeq Acc Id: XM_039097992   ⟹   XP_038953920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,651 - 47,614,532 (+)NCBI
mRatBN7.21930,512,433 - 30,710,313 (+)NCBI
RefSeq Acc Id: XM_039097993   ⟹   XP_038953921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,783 - 47,485,425 (+)NCBI
mRatBN7.21930,448,572 - 30,581,209 (+)NCBI
RefSeq Acc Id: XM_039097995   ⟹   XP_038953923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,785 - 47,511,848 (+)NCBI
mRatBN7.21930,448,573 - 30,607,633 (+)NCBI
RefSeq Acc Id: XM_063278285   ⟹   XP_063134355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,801 - 47,614,532 (+)NCBI
RefSeq Acc Id: XM_063278286   ⟹   XP_063134356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,368,586 - 47,614,532 (+)NCBI
RefSeq Acc Id: XM_063278287   ⟹   XP_063134357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,651 - 47,614,532 (+)NCBI
RefSeq Acc Id: XM_063278288   ⟹   XP_063134358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,416,651 - 47,559,179 (+)NCBI
RefSeq Acc Id: XR_005496687
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,789 - 47,519,087 (+)NCBI
mRatBN7.21930,448,575 - 30,614,872 (+)NCBI
RefSeq Acc Id: XR_005496688
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,784 - 47,519,087 (+)NCBI
mRatBN7.21930,448,573 - 30,614,872 (+)NCBI
RefSeq Acc Id: XR_010060031
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81947,352,787 - 47,511,835 (+)NCBI
RefSeq Acc Id: NP_001102971   ⟸   NM_001109501
- UniProtKB: D4AB50 (UniProtKB/TrEMBL),   A6IYL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770753   ⟸   XM_008772531
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A8K7 (UniProtKB/TrEMBL),   D4AB50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456848   ⟸   XM_017601359
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSRNOP00000017867   ⟸   ENSRNOT00000017867
RefSeq Acc Id: XP_038953921   ⟸   XM_039097993
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038953923   ⟸   XM_039097995
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038953914   ⟸   XM_039097986
- Peptide Label: isoform X1
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953915   ⟸   XM_039097987
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ADP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953916   ⟸   XM_039097988
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953920   ⟸   XM_039097992
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953917   ⟸   XM_039097989
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953918   ⟸   XM_039097990
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953919   ⟸   XM_039097991
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089391   ⟸   ENSRNOT00000111579
Ensembl Acc Id: ENSRNOP00000076625   ⟸   ENSRNOT00000111331
Ensembl Acc Id: ENSRNOP00000090450   ⟸   ENSRNOT00000104023
Ensembl Acc Id: ENSRNOP00000078630   ⟸   ENSRNOT00000099142
RefSeq Acc Id: XP_063134355   ⟸   XM_063278285
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ADP2 (UniProtKB/TrEMBL),   A0A8I5ZK44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134356   ⟸   XM_063278286
- Peptide Label: isoform X5
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134357   ⟸   XM_063278287
- Peptide Label: isoform X7
- UniProtKB: D4AB50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134358   ⟸   XM_063278288
- Peptide Label: isoform X8
Protein Domains
PH   Rho-GAP   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AB50-F1-model_v2 AlphaFold D4AB50 1-786 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701059
Promoter ID:EPDNEW_R11582
Type:initiation region
Name:Arhgap10_1
Description:Rho GTPase activating protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01934,140,012 - 34,140,072EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588859 AgrOrtholog
BioCyc Gene G2FUF-5902 BioCyc
Ensembl Genes ENSRNOG00000013152 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017867.6 UniProtKB/TrEMBL
  ENSRNOT00000099142.1 UniProtKB/TrEMBL
  ENSRNOT00000104023.1 UniProtKB/TrEMBL
  ENSRNOT00000111331.1 UniProtKB/TrEMBL
  ENSRNOT00000111579.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR-dom UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  GRAF2_SH3 UniProtKB/TrEMBL
  GRAF_fam UniProtKB/TrEMBL
  PH_GRAF UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report rno:688429 UniProtKB/TrEMBL
NCBI Gene 688429 ENTREZGENE
PANTHER OLIGOPHRENIN 1 UniProtKB/TrEMBL
  PTHR12552:SF5 UniProtKB/TrEMBL
Pfam BAR_3 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Arhgap10 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013152 RatGTEx
SMART RhoGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
UniProt A0A8I5ZK44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZL97_RAT UniProtKB/TrEMBL
  A0A8I6A8K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADP2 ENTREZGENE, UniProtKB/TrEMBL
  A6IYL0 ENTREZGENE, UniProtKB/TrEMBL
  D4AB50 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Arhgap10  Rho GTPase activating protein 10  LOC688429  similar to Rho GTPase activating protein 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688429  similar to Rho GTPase activating protein 10  LOC684731  similar to Rho GTPase activating protein 10  Data merged from RGD:1586762 1643240 APPROVED
2006-11-19 LOC688429  similar to Rho GTPase activating protein 10      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684731  similar to Rho GTPase activating protein 10      Symbol and Name status set to provisional 70820 PROVISIONAL