Immp1l (inner mitochondrial membrane peptidase subunit 1) - Rat Genome Database

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Gene: Immp1l (inner mitochondrial membrane peptidase subunit 1) Rattus norvegicus
Analyze
Symbol: Immp1l
Name: inner mitochondrial membrane peptidase subunit 1
RGD ID: 1587441
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial inner membrane peptidase complex. Orthologous to human IMMP1L (inner mitochondrial membrane peptidase subunit 1); PARTICIPATES IN presequence pathway of mitochondrial protein import; INTERACTS WITH bisphenol A; paracetamol; tetrachloromethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: IMP1 inner mitochondrial membrane peptidase-like; LOC691145; mitochondrial inner membrane protease subunit 1; similar to CG9240-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Immp1lTn(sb-T2/Bart3)2.246Mcwi  
Genetic Models: F344-Immp1lTn(sb-T2/Bart3)2.246Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2392,385,329 - 92,450,557 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl392,385,379 - 92,452,313 (+)Ensembl
Rnor_6.0395,955,126 - 96,024,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl395,959,703 - 96,024,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03102,575,250 - 102,646,194 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,408,864 - 91,436,603 (+)NCBIRGSC3.4rn4RGSC3.4
Celera391,434,869 - 91,498,889 (+)NCBICelera
Cytogenetic Map3q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Processing of mitochondrial presequences. Mossmann D, etal., Biochim Biophys Acta. 2012 Sep-Oct;1819(9-10):1098-106. doi: 10.1016/j.bbagrm.2011.11.007. Epub 2011 Dec 7.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15814844  


Genomics

Comparative Map Data
Immp1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2392,385,329 - 92,450,557 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl392,385,379 - 92,452,313 (+)Ensembl
Rnor_6.0395,955,126 - 96,024,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl395,959,703 - 96,024,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03102,575,250 - 102,646,194 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,408,864 - 91,436,603 (+)NCBIRGSC3.4rn4RGSC3.4
Celera391,434,869 - 91,498,889 (+)NCBICelera
Cytogenetic Map3q33NCBI
IMMP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381131,432,401 - 31,509,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1131,432,401 - 31,509,645 (-)EnsemblGRCh38hg38GRCh38
GRCh371131,453,948 - 31,531,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361131,410,525 - 31,487,745 (-)NCBINCBI36hg18NCBI36
Celera1131,601,371 - 31,678,615 (-)NCBI
Cytogenetic Map11p13NCBI
HuRef1131,148,356 - 31,225,919 (-)NCBIHuRef
CHM1_11131,453,476 - 31,530,721 (-)NCBICHM1_1
T2T-CHM13v2.01131,568,225 - 31,645,460 (-)NCBI
Immp1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392105,734,983 - 105,795,903 (+)NCBIGRCm39mm39
GRCm39 Ensembl2105,734,983 - 105,795,903 (+)Ensembl
GRCm382105,904,638 - 105,965,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2105,904,638 - 105,965,558 (+)EnsemblGRCm38mm10GRCm38
MGSCv372105,744,795 - 105,805,715 (+)NCBIGRCm37mm9NCBIm37
MGSCv362105,705,524 - 105,768,025 (+)NCBImm8
Celera2107,127,142 - 107,181,499 (+)NCBICelera
Cytogenetic Map2E3NCBI
Immp1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554769,784,838 - 9,850,091 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554769,784,838 - 9,850,076 (-)NCBIChiLan1.0ChiLan1.0
IMMP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11131,285,619 - 31,362,866 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,285,619 - 31,362,843 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01131,396,011 - 31,473,342 (-)NCBIMhudiblu_PPA_v0panPan3
IMMP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11835,880,278 - 35,963,128 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1835,880,183 - 35,963,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1835,529,405 - 35,612,247 (+)NCBI
ROS_Cfam_1.01836,524,425 - 36,607,191 (+)NCBI
ROS_Cfam_1.0 Ensembl1836,524,319 - 36,607,242 (+)Ensembl
UMICH_Zoey_3.11836,097,808 - 36,180,183 (+)NCBI
UNSW_CanFamBas_1.01835,679,026 - 35,761,612 (+)NCBI
UU_Cfam_GSD_1.01836,314,293 - 36,397,070 (+)NCBI
Immp1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494733,091,418 - 33,164,763 (+)NCBI
SpeTri2.0NW_0049365336,216,254 - 6,289,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IMMP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl229,230,210 - 29,307,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1229,230,172 - 29,305,906 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,737,387 - 31,813,219 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IMMP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,679,133 - 33,757,924 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl133,710,582 - 33,756,884 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038130,842,507 - 130,926,241 (+)NCBIVero_WHO_p1.0
Immp1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476620,285,362 - 20,343,659 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476620,279,082 - 20,343,857 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127552  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2392,401,711 - 92,401,917 (+)MAPPERmRatBN7.2
Rnor_6.0395,971,483 - 95,971,688NCBIRnor6.0
Rnor_5.03102,591,606 - 102,591,811UniSTSRnor5.0
RGSC_v3.4391,343,319 - 91,343,524UniSTSRGSC3.4
Celera391,451,220 - 91,451,425UniSTS
RH 3.4 Map3720.99UniSTS
Cytogenetic Map3q33UniSTS
RH129656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2392,448,320 - 92,449,534 (+)MAPPERmRatBN7.2
Rnor_6.0396,023,078 - 96,024,291NCBIRnor6.0
Rnor_5.03102,644,956 - 102,646,169UniSTSRnor5.0
RGSC_v3.4391,567,546 - 91,568,765UniSTSRGSC3.4
Celera391,497,651 - 91,498,864UniSTS
Cytogenetic Map3q33UniSTS
RH141456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2392,450,796 - 92,451,011 (+)MAPPERmRatBN7.2
Rnor_6.0396,025,554 - 96,025,768NCBIRnor6.0
Rnor_5.03102,647,432 - 102,647,646UniSTSRnor5.0
RGSC_v3.4391,438,880 - 91,439,094UniSTSRGSC3.4
RH 3.4 Map3721.1UniSTS
Cytogenetic Map3q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat


Genetic Models
This gene Immp1l is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:78
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000006406
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 46 35 19 35 8 11 74 35 41 11 8
Low 11 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006406   ⟹   ENSRNOP00000006406
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl392,385,379 - 92,449,559 (+)Ensembl
Rnor_6.0 Ensembl395,959,703 - 96,024,836 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100315   ⟹   ENSRNOP00000077722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl392,385,397 - 92,452,313 (+)Ensembl
RefSeq Acc Id: XM_001076990   ⟹   XP_001076990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2392,385,329 - 92,449,559 (+)NCBI
Rnor_6.0395,955,126 - 96,024,316 (+)NCBI
Rnor_5.03102,575,250 - 102,646,194 (+)NCBI
RGSC_v3.4391,408,864 - 91,436,603 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234669   ⟹   XP_006234731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2392,385,329 - 92,449,403 (+)NCBI
Rnor_6.0395,955,126 - 96,024,124 (+)NCBI
Rnor_5.03102,575,250 - 102,646,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592187   ⟹   XP_017447676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2392,385,329 - 92,449,559 (+)NCBI
Rnor_6.0395,955,126 - 96,024,316 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005502320
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2392,385,329 - 92,450,557 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_001076990   ⟸   XM_001076990
- Peptide Label: isoform X1
- UniProtKB: D3ZWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234731   ⟸   XM_006234669
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017447676   ⟸   XM_017592187
- Peptide Label: isoform X1
- UniProtKB: D3ZWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006406   ⟸   ENSRNOT00000006406
RefSeq Acc Id: ENSRNOP00000077722   ⟸   ENSRNOT00000100315
Protein Domains
Peptidase_S26

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWF3-F1-model_v2 AlphaFold D3ZWF3 1-166 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587441 AgrOrtholog
BioCyc Gene G2FUF-48517 BioCyc
Ensembl Genes ENSRNOG00000004829 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000006406 ENTREZGENE
  ENSRNOP00000006406.5 UniProtKB/TrEMBL
  ENSRNOP00000077722 ENTREZGENE
  ENSRNOP00000077722.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006406 ENTREZGENE
  ENSRNOT00000006406.7 UniProtKB/TrEMBL
  ENSRNOT00000100315 ENTREZGENE
  ENSRNOT00000100315.1 UniProtKB/TrEMBL
InterPro LexA/Signal_pep-like_sf UniProtKB/TrEMBL
  Pept_S26A_signal_pept_1 UniProtKB/TrEMBL
  Peptidase_S26 UniProtKB/TrEMBL
KEGG Report rno:691145 UniProtKB/TrEMBL
NCBI Gene 691145 ENTREZGENE
Pfam Peptidase_S26 UniProtKB/TrEMBL
PhenoGen Immp1l PhenoGen
PRINTS LEADERPTASE UniProtKB/TrEMBL
Superfamily-SCOP Pept_S24_S26_C UniProtKB/TrEMBL
TIGRFAMs sigpep_I_bact UniProtKB/TrEMBL
UniProt A0A8I5ZKD1_RAT UniProtKB/TrEMBL
  D3ZWF3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Immp1l  IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)  LOC687395  similar to CG9240-PA  Data Merged 1643240 APPROVED
2008-03-06 Immp1l  IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)  LOC691145  similar to CG9240-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC691145  similar to CG9240-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687395  similar to CG9240-PA      Symbol and Name status set to provisional 70820 PROVISIONAL