Nhp2-ps6 (NHP2 ribonucleoprotein, pseudogene 6) - Rat Genome Database

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Gene: Nhp2-ps6 (NHP2 ribonucleoprotein, pseudogene 6) Rattus norvegicus
Analyze
Symbol: Nhp2-ps6
Name: NHP2 ribonucleoprotein, pseudogene 6
RGD ID: 1587275
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000067354; LOC367563; similar to nucleolar protein family A, member 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,316,131 - 66,316,573 (+)NCBIGRCr8
mRatBN7.21949,407,488 - 49,407,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,407,488 - 49,407,859 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1949,407,488 - 49,407,859 (+)NCBImRatBN7.2 Ensembl
Rnor_6.01953,273,201 - 53,273,695 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01964,014,807 - 64,015,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1948,653,234 - 48,653,728 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Nhp2-ps6
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000106613   ⟹   ENSRNOP00000096349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1949,407,488 - 49,407,859 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000096349.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000096349   ⟸   ENSRNOT00000106613

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5444 BioCyc
Ensembl Genes ENSRNOG00000067354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106613.1 UniProtKB/TrEMBL
NCBI Gene 367563 ENTREZGENE
PhenoGen Nhp2-ps6 PhenoGen
RatGTEx ENSRNOG00000067354 RatGTEx
UniProt A0A8I6ALL9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Nhp2-ps6  NHP2 ribonucleoprotein, pseudogene 6  LOC367563  similar to nucleolar protein family A, member 2  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC367563  similar to nucleolar protein family A, member 2  ENSRNOG00000067354    Data merged from RGD:150340771 737654 PROVISIONAL
2021-08-31 ENSRNOG00000067354        Symbol and Name status set to provisional 45752 PROVISIONAL
2006-11-19 LOC367563  similar to nucleolar protein family A, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL