Psmb6-ps2 (proteasome 20S subunit beta 6, pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Psmb6-ps2 (proteasome 20S subunit beta 6, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Psmb6-ps2
Name: proteasome 20S subunit beta 6, pseudogene 2
RGD ID: 1584113
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC688853; similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X35,578,117 - 35,581,889 (-)NCBIGRCr8
mRatBN7.2X31,946,332 - 31,950,104 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X33,680,946 - 33,685,020 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X34,027,937 - 34,032,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X52,703,419 - 52,705,628 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX32,250,012 - 32,253,785 (-)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Psmb6-ps2
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003752042   ⟹   XP_003752090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0X34,027,937 - 34,030,146 (-)NCBI
RefSeq Acc Id: XM_003754762   ⟹   XP_003754810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX32,250,012 - 32,252,221 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2532 BioCyc
NCBI Gene 688853 ENTREZGENE
PhenoGen Psmb6-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Psmb6-ps2  proteasome 20S subunit beta 6, pseudogene 2  LOC688853  similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC688853  similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)  LOC684832  similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)  Data merged from RGD:1585564 1643240 APPROVED
2006-11-19 LOC688853  similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684832  similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Macropain delta chain) (Multicatalytic endopeptidase complex delta chain) (Proteasome subunit Y)      Symbol and Name status set to provisional 70820 PROVISIONAL