Dnpep (aspartyl aminopeptidase) - Rat Genome Database

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Gene: Dnpep (aspartyl aminopeptidase) Rattus norvegicus
Analyze
Symbol: Dnpep
Name: aspartyl aminopeptidase
RGD ID: 1583848
Description: Predicted to enable identical protein binding activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human DNPEP (aspartyl aminopeptidase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; fenvalerate.
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2976,799,931 - 76,808,841 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl976,783,966 - 76,808,716 (-)Ensembl
Rnor_6.0982,505,529 - 82,514,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,505,530 - 82,514,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,274,790 - 82,283,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,586,544 - 74,595,414 (-)NCBIRGSC3.4rn4RGSC3.4
Celera974,370,340 - 74,379,210 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17692297   PMID:21630459   PMID:22516433   PMID:25416956   PMID:25587118   PMID:25931508  


Genomics

Comparative Map Data
Dnpep
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2976,799,931 - 76,808,841 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl976,783,966 - 76,808,716 (-)Ensembl
Rnor_6.0982,505,529 - 82,514,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,505,530 - 82,514,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,274,790 - 82,283,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,586,544 - 74,595,414 (-)NCBIRGSC3.4rn4RGSC3.4
Celera974,370,340 - 74,379,210 (-)NCBICelera
Cytogenetic Map9q33NCBI
DNPEP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,372,043 - 219,400,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2219,372,043 - 219,400,022 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,236,765 - 220,264,729 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,946,424 - 219,960,906 (-)NCBINCBI36hg18NCBI36
Build 342220,064,421 - 220,078,134NCBI
Celera2214,008,170 - 214,022,675 (-)NCBI
Cytogenetic Map2q35NCBI
HuRef2212,091,206 - 212,105,674 (-)NCBIHuRef
CHM1_12220,244,017 - 220,258,479 (-)NCBICHM1_1
T2T-CHM13v2.02219,856,797 - 219,884,804 (-)NCBI
Dnpep
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,285,209 - 75,294,298 (-)NCBIGRCm39mm39
GRCm39 Ensembl175,284,540 - 75,294,634 (-)Ensembl
GRCm38175,308,565 - 75,317,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,307,896 - 75,317,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,305,140 - 75,314,212 (-)NCBIGRCm37mm9NCBIm37
MGSCv36175,191,044 - 75,200,785 (-)NCBImm8
Celera175,799,431 - 75,808,546 (-)NCBICelera
Cytogenetic Map1C4NCBI
Dnpep
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,072,924 - 14,082,222 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,072,924 - 14,082,222 (+)NCBIChiLan1.0ChiLan1.0
DNPEP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B225,221,703 - 225,247,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,221,703 - 225,247,699 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B106,631,392 - 106,645,100 (-)NCBIMhudiblu_PPA_v0panPan3
DNPEP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,898,015 - 25,917,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,863,445 - 25,918,224 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,723,846 - 26,743,829 (-)NCBI
ROS_Cfam_1.03725,913,240 - 25,933,226 (-)NCBI
ROS_Cfam_1.0 Ensembl3725,913,243 - 25,933,059 (-)Ensembl
UMICH_Zoey_3.13725,817,570 - 25,837,100 (-)NCBI
UNSW_CanFamBas_1.03725,753,158 - 25,773,113 (-)NCBI
UU_Cfam_GSD_1.03725,773,653 - 25,793,650 (-)NCBI
LOC101971723
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,428,177 - 175,437,438 (-)NCBI
SpeTri2.0NW_0049365691,770,958 - 1,780,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNPEP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,387,736 - 121,412,752 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,391,746 - 121,404,138 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,425,137 - 134,437,835 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103217909
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,266,527 - 105,294,553 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,265,757 - 105,282,384 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604094,117,451 - 94,132,386 (+)NCBIVero_WHO_p1.0
Dnpep
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,658,379 - 5,667,010 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248235,658,301 - 5,667,010 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127957  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2976,799,954 - 76,800,749 (+)MAPPERmRatBN7.2
Rnor_6.0982,505,553 - 82,506,347NCBIRnor6.0
Rnor_5.0982,274,814 - 82,275,608UniSTSRnor5.0
RGSC_v3.4974,586,568 - 74,587,362UniSTSRGSC3.4
Celera974,370,364 - 74,371,158UniSTS
RH 3.4 Map9757.4UniSTS
Cytogenetic Map9q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:91
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000026799
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000026799   ⟹   ENSRNOP00000026799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,799,933 - 76,808,699 (-)Ensembl
Rnor_6.0 Ensembl982,505,530 - 82,514,399 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096092   ⟹   ENSRNOP00000087861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,799,934 - 76,808,365 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108004   ⟹   ENSRNOP00000089181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,799,938 - 76,808,682 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108971   ⟹   ENSRNOP00000093633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,783,966 - 76,808,716 (-)Ensembl
RefSeq Acc Id: NM_001024879   ⟹   NP_001020050
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2976,799,931 - 76,808,801 (-)NCBI
Rnor_6.0982,505,529 - 82,514,399 (-)NCBI
Rnor_5.0982,274,790 - 82,283,660 (-)NCBI
RGSC_v3.4974,586,544 - 74,595,414 (-)RGD
Celera974,370,340 - 74,379,210 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245184   ⟹   XP_006245246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2976,799,931 - 76,808,389 (-)NCBI
Rnor_6.0982,505,529 - 82,513,960 (-)NCBI
Rnor_5.0982,274,790 - 82,283,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245185   ⟹   XP_006245247
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2976,799,931 - 76,808,651 (-)NCBI
Rnor_6.0982,505,529 - 82,514,261 (-)NCBI
Rnor_5.0982,274,790 - 82,283,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245186   ⟹   XP_006245248
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2976,799,931 - 76,808,674 (-)NCBI
Rnor_6.0982,505,529 - 82,514,261 (-)NCBI
Rnor_5.0982,274,790 - 82,283,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083368   ⟹   XP_038939296
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2976,799,931 - 76,808,841 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001020050   ⟸   NM_001024879
- UniProtKB: Q4V8H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245248   ⟸   XM_006245186
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245247   ⟸   XM_006245185
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245246   ⟸   XM_006245184
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000026799   ⟸   ENSRNOT00000026799
RefSeq Acc Id: XP_038939296   ⟸   XM_039083368
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000093633   ⟸   ENSRNOT00000108971
RefSeq Acc Id: ENSRNOP00000089181   ⟸   ENSRNOT00000108004
RefSeq Acc Id: ENSRNOP00000087861   ⟸   ENSRNOT00000096092

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8H5-F1-model_v2 AlphaFold Q4V8H5 1-475 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696778
Promoter ID:EPDNEW_R7303
Type:multiple initiation site
Name:Dnpep_1
Description:aspartyl aminopeptidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0982,514,309 - 82,514,369EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583848 AgrOrtholog
BioCyc Gene G2FUF-27079 BioCyc
Ensembl Genes ENSRNOG00000019772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026799 ENTREZGENE
  ENSRNOP00000026799.5 UniProtKB/TrEMBL
  ENSRNOP00000087861 ENTREZGENE
  ENSRNOP00000087861.1 UniProtKB/TrEMBL
  ENSRNOP00000089181 ENTREZGENE
  ENSRNOP00000089181.1 UniProtKB/TrEMBL
  ENSRNOP00000093633.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026799 ENTREZGENE
  ENSRNOT00000026799.6 UniProtKB/TrEMBL
  ENSRNOT00000096092 ENTREZGENE
  ENSRNOT00000096092.1 UniProtKB/TrEMBL
  ENSRNOT00000108004 ENTREZGENE
  ENSRNOT00000108004.1 UniProtKB/TrEMBL
  ENSRNOT00000108971.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.250.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7128977 IMAGE-MGC_LOAD
  IMAGE:7453069 IMAGE-MGC_LOAD
InterPro Peptidase_M18 UniProtKB/TrEMBL
  Peptidase_M18_dom2 UniProtKB/TrEMBL
KEGG Report rno:301529 UniProtKB/TrEMBL
MGC_CLONE MGC:114431 IMAGE-MGC_LOAD
  MGC:94178 IMAGE-MGC_LOAD
NCBI Gene 301529 ENTREZGENE
PANTHER PTHR28570 UniProtKB/TrEMBL
Pfam Peptidase_M18 UniProtKB/TrEMBL
PhenoGen Dnpep PhenoGen
PRINTS AMINO1PTASE UniProtKB/TrEMBL
UniProt A0A8I6A8L3_RAT UniProtKB/TrEMBL
  A0A8I6ABE2_RAT UniProtKB/TrEMBL
  A0A8I6GKD5_RAT UniProtKB/TrEMBL
  F7FML8_RAT UniProtKB/TrEMBL
  Q4V8H5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 Dnpep  aspartyl aminopeptidase      Symbol and Name status set to provisional 70820 PROVISIONAL