Tex19.1 (testis expressed 19.1) - Rat Genome Database

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Gene: Tex19.1 (testis expressed 19.1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tex19.1
Name: testis expressed 19.1
RGD ID: 1566280
Description: Predicted to enable piRNA binding activity. Predicted to be involved in several processes, including male gonad development; meiotic nuclear division; and placenta development. Predicted to be active in cytoplasm and nucleus. Orthologous to human TEX19 (testis expressed 19); INTERACTS WITH bisphenol A; Cuprizon; manganese(II) chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498033; similar to testis expressed gene 19; testis expressed gene 19; testis expressed gene 19.1; testis-expressed protein 19.1; testis-expressed protein 19A; testis-expressed sequence 1A; Tex19; Tex19a
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,918,559 - 106,920,762 (+)NCBIGRCr8
GRCr8 Ensembl10106,918,350 - 106,920,777 (+)EnsemblGRCr8 Ensembl
mRatBN7.210106,420,245 - 106,422,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,420,139 - 106,422,425 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,522,959 - 111,525,161 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,986,011 - 110,988,213 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,340,684 - 106,342,888 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,346,453 - 110,348,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,346,453 - 110,348,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,933,170 - 109,935,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,376,944 - 110,379,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10104,958,840 - 104,961,042 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18096721  


Genomics

Variants

.
Variants in Tex19.1
8 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:51
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000054928
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat


Expression

RNA-SEQ Expression

appendage
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
2 16 8 9 7 7 11 16 2 53 2 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000054928   ⟹   ENSRNOP00000051811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,918,350 - 106,920,777 (+)Ensembl
mRatBN7.2 Ensembl10106,420,139 - 106,422,425 (+)Ensembl
Rnor_6.0 Ensembl10110,346,453 - 110,348,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134601   ⟹   ENSRNOP00000107445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10106,918,643 - 106,920,777 (+)Ensembl
RefSeq Acc Id: NM_001017482   ⟹   NP_001017482
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,918,559 - 106,920,762 (+)NCBI
mRatBN7.210106,420,245 - 106,422,452 (+)NCBI
Rnor_6.010110,346,453 - 110,348,655 (+)NCBI
Rnor_5.010109,933,170 - 109,935,372 (+)NCBI
RGSC_v3.410110,376,944 - 110,379,146 (+)RGD
Celera10104,958,840 - 104,961,042 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001017482 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83916 (Get FASTA)   NCBI Sequence Viewer  
  EDM06932 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051811
  ENSRNOP00000051811.2
GenBank Protein Q5XHY3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001017482   ⟸   NM_001017482
- UniProtKB: Q5XHY3 (UniProtKB/Swiss-Prot),   A6HLM7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051811   ⟸   ENSRNOT00000054928
Ensembl Acc Id: ENSRNOP00000107445   ⟸   ENSRNOT00000134601

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XHY3-F1-model_v2 AlphaFold Q5XHY3 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697988
Promoter ID:EPDNEW_R8512
Type:single initiation site
Name:Tex19_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010110,346,441 - 110,346,501EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566280 AgrOrtholog
BioCyc Gene G2FUF-22368 BioCyc
Ensembl Genes ENSRNOG00000036670 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054928 ENTREZGENE
  ENSRNOT00000054928.3 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134696 IMAGE-MGC_LOAD
InterPro TEX19 UniProtKB/Swiss-Prot
KEGG Report rno:498033 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95299 IMAGE-MGC_LOAD
NCBI Gene 498033 ENTREZGENE
PANTHER PTHR31387 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 19 UniProtKB/Swiss-Prot
Pfam TEX19 UniProtKB/Swiss-Prot
PhenoGen Tex19.1 PhenoGen
RatGTEx ENSRNOG00000036670 RatGTEx
UniProt A6HLM7 ENTREZGENE, UniProtKB/TrEMBL
  Q5XHY3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-09 Tex19.1  testis expressed 19.1  Tex19.1  testis expressed gene 19.1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-16 Tex19.1  testis expressed gene 19.1  Tex19  testis expressed gene 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tex19  testis expressed gene 19  LOC498033  similar to testis expressed gene 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498033  similar to testis expressed gene 19      Symbol and Name status set to provisional 70820 PROVISIONAL