Gene: Synb (syncytin b) Rattus norvegicus |
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Analyze |
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Symbol: |
Synb |
Name: |
syncytin b |
RGD ID: |
1566115 |
Description: |
Predicted to be involved in syncytium formation by plasma membrane fusion. |
Type: |
protein-coding
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RefSeq Status: |
REVIEWED |
Previously known as: |
endogenous retrovirus group FRD, member 1; envelope glycoprotein syncytin-B; Ervfrd-1; Herv-frd; HERV-FRD provirus ancestral Env polyprotein; LOC290348; RGD1566115; syncytin 2 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 50,989,313 - 50,996,237 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 44,580,818 - 44,588,417 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 44,583,476 - 44,585,345 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 48,701,396 - 48,703,265 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 49,812,888 - 49,814,757 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 46,672,221 - 46,674,090 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 51,174,986 - 51,222,929 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 51,174,989 - 51,176,858 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 54,904,788 - 54,952,331 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 49,853,767 - 49,855,636 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 15 | 44,266,431 - 44,268,300 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | p11 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
Synb (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 50,989,313 - 50,996,237 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 44,580,818 - 44,588,417 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 44,583,476 - 44,585,345 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 48,701,396 - 48,703,265 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 49,812,888 - 49,814,757 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 46,672,221 - 46,674,090 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 51,174,986 - 51,222,929 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 51,174,989 - 51,176,858 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 54,904,788 - 54,952,331 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 49,853,767 - 49,855,636 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 15 | 44,266,431 - 44,268,300 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | p11 | NCBI | | | | |
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Gm27174 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 14 | 69,760,100 - 69,792,776 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 69,783,698 - 69,792,812 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 69,508,628 - 69,555,417 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 69,508,632 - 69,512,549 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 69,546,249 - 69,555,332 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 69,289,344 - 69,294,299 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 69,908,455 - 69,912,356 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 68,243,728 - 68,247,629 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 67,069,330 - 67,073,231 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | D2 | NCBI | | | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 19 | Count of miRNA genes: | 19 | Interacting mature miRNAs: | 19 | Transcripts: | ENSRNOT00000038845 | Prediction methods: | Miranda, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
QTLs in Region (mRatBN7.2)
2298549 | Neuinf12 | Neuroinflammation QTL 12 | 3.5 | | nervous system integrity trait (VT:0010566) | spinal cord beta-2 microglobulin mRNA level (CMO:0002125) | 15 | 1 | 55302115 | Rat | 10401805 | Kidm51 | Kidney mass QTL 51 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 15 | 306329 | 45306329 | Rat | 738017 | Hcas7 | Hepatocarcinoma susceptibility QTL 7 | 2.91 | | liver integrity trait (VT:0010547) | liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464) | 15 | 2266368 | 46921453 | Rat | 1582251 | Gluco24 | Glucose level QTL 24 | 3.2 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 15 | 5530756 | 50530756 | Rat | 631273 | Lecl2 | Lens clarity QTL 2 | | 0.001 | lens clarity trait (VT:0001304) | age of onset/diagnosis of cataract (CMO:0001584) | 15 | 10596089 | 55596089 | Rat | 2300167 | Bmd63 | Bone mineral density QTL 63 | 5.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 15 | 11111142 | 56111142 | Rat | 2300173 | Bmd62 | Bone mineral density QTL 62 | 12.8 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 15 | 11111142 | 56111142 | Rat | 2293688 | Bss29 | Bone structure and strength QTL 29 | 5.31 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 15 | 11111142 | 56111142 | Rat | 2317750 | Glom26 | Glomerulus QTL 26 | 4.3 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 15 | 12496141 | 65205939 | Rat | 61424 | Scl1 | Serum cholesterol level QTL 1 | 7.7 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 15 | 16725528 | 80672115 | Rat | 1331729 | Rf42 | Renal function QTL 42 | 3.071 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 15 | 17362897 | 73690657 | Rat | 2324620 | Coatc3 | Coat color QTL 3 | | | coat/hair pigmentation trait (VT:0010463) | pigmented coat/hair area to total coat/hair area ratio (CMO:0001810) | 15 | 19856566 | 46187442 | Rat | 10054130 | Srcrt8 | Stress Responsive Cort QTL 8 | 2.18 | 0.0085 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 15 | 22117933 | 67117933 | Rat | 1578646 | Bmd18 | Bone mineral density QTL 18 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 15 | 22806240 | 98288169 | Rat | 1578647 | Bmd17 | Bone mineral density QTL 17 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 15 | 22806240 | 98288169 | Rat | 1578660 | Bss19 | Bone structure and strength QTL 19 | 4.3 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 15 | 22806240 | 98288169 | Rat | 1582214 | Stl21 | Serum triglyceride level QTL 21 | 3.1 | 0.022 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 15 | 28030665 | 82262678 | Rat | 1582227 | Gluco30 | Glucose level QTL 30 | 3.6 | 0.0003 | blood glucose amount (VT:0000188) | absolute change in blood glucose level area under curve (CMO:0002034) | 15 | 28030665 | 82262678 | Rat | 1582228 | Epfw3 | Epididymal fat weight QTL 3 | 4.1 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | 1582242 | Gluco28 | Glucose level QTL 28 | 3.3 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 15 | 28030665 | 82262678 | Rat | 1582244 | Bw79 | Body weight QTL 79 | 4 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | 2293691 | Bmd37 | Bone mineral density QTL 37 | 6.6 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 15 | 33611058 | 71477291 | Rat | 2293686 | Bmd36 | Bone mineral density QTL 36 | 7.4 | 0.0001 | femur strength trait (VT:0010010) | femoral neck ultimate force (CMO:0001703) | 15 | 33611058 | 71477291 | Rat | 1598828 | Glom14 | Glomerulus QTL 14 | 2.5 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 15 | 34054139 | 79054139 | Rat | 7411725 | Strs7 | Sensitivity to stroke QTL 7 | 3.8 | | cerebrum integrity trait (VT:0010549) | percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932) | 15 | 40289901 | 49308583 | Rat | 2306968 | Anxrr23 | Anxiety related response QTL 23 | 4.83 | | reflex trait (VT:0001961) | amplitude of the acoustic startle response (CMO:0001520) | 15 | 40631268 | 46187442 | Rat | 1300144 | Rf23 | Renal function QTL 23 | 3.61 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 15 | 40631268 | 98288169 | Rat | |