Sned1 (sushi, nidogen and EGF-like domains 1) - Rat Genome Database

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Gene: Sned1 (sushi, nidogen and EGF-like domains 1) Rattus norvegicus
Analyze
Symbol: Sned1
Name: sushi, nidogen and EGF-like domains 1
RGD ID: 1566079
Description: Predicted to enable Notch binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to be located in extracellular matrix. Orthologous to human SNED1 (sushi, nidogen and EGF like domains 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: insulin responsive sequence DNA binding protein 1; insulin responsive sequence DNA binding protein-1; insulin-responsive sequence DNA-binding protein 1; IRE-BP1; sushi, nidogen and EGF-like domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,221,497 - 101,281,401 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9101,221,530 - 101,281,401 (+)EnsemblGRCr8
mRatBN7.2993,774,087 - 93,834,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,774,119 - 93,830,694 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9102,209,684 - 102,266,255 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,345,440 - 107,402,056 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,701,582 - 105,758,198 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,380,487 - 100,439,125 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,380,515 - 100,437,056 (+)Ensemblrn6Rnor6.0
Rnor_5.09100,037,552 - 100,095,480 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4992,509,499 - 92,568,597 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera991,309,255 - 91,365,649 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15194686   PMID:15753094   PMID:18566119   PMID:19213832   PMID:23376485  


Genomics

Comparative Map Data
Sned1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,221,497 - 101,281,401 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9101,221,530 - 101,281,401 (+)EnsemblGRCr8
mRatBN7.2993,774,087 - 93,834,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,774,119 - 93,830,694 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9102,209,684 - 102,266,255 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,345,440 - 107,402,056 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,701,582 - 105,758,198 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,380,487 - 100,439,125 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,380,515 - 100,437,056 (+)Ensemblrn6Rnor6.0
Rnor_5.09100,037,552 - 100,095,480 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4992,509,499 - 92,568,597 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera991,309,255 - 91,365,649 (+)NCBICelera
Cytogenetic Map9q36NCBI
SNED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,997,650 - 241,095,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,998,618 - 241,095,568 (+)Ensemblhg38GRCh38
GRCh372241,938,035 - 242,034,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,586,928 - 241,682,316 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2235,639,389 - 235,703,345 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,693,935 - 233,789,651 (+)NCBIHuRef
CHM1_12241,941,955 - 242,039,698 (+)NCBICHM1_1
T2T-CHM13v2.02241,496,555 - 241,594,674 (+)NCBIT2T-CHM13v2.0
Sned1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,163,563 - 93,228,787 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,163,563 - 93,228,787 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38193,235,796 - 93,301,065 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,235,841 - 93,301,065 (+)Ensemblmm10GRCm38
MGSCv37195,132,474 - 95,193,025 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36195,066,247 - 95,131,471 (+)NCBIMGSCv36mm8
Celera196,180,585 - 96,241,119 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.21NCBI
Sned1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542589,746 - 627,519 (-)Ensembl
ChiLan1.0NW_004955542587,159 - 628,159 (-)NCBIChiLan1.0ChiLan1.0
SNED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,683,163 - 143,785,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,698,173 - 143,797,822 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,253,888 - 128,351,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B247,067,282 - 247,149,093 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B247,085,509 - 247,144,421 (+)EnsemblpanPan2panpan1.1
SNED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12551,057,358 - 51,139,808 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2551,057,376 - 51,135,412 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2551,270,707 - 51,351,866 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02551,252,472 - 51,333,679 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,252,316 - 51,330,535 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,100,189 - 51,181,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,839,827 - 50,920,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,115,989 - 51,197,175 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sned1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,442,944 - 192,509,852 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745714,368 - 776,355 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936745709,446 - 761,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,821,228 - 139,881,092 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115139,821,021 - 139,881,099 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215154,937,025 - 154,997,243 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110127,058,188 - 127,142,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10127,058,358 - 127,138,704 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604072,239,399 - 72,327,431 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sned1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,147,008 - 5,202,666 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248475,146,973 - 5,207,481 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Sned1
311 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:508
Count of miRNA genes:251
Interacting mature miRNAs:292
Transcripts:ENSRNOT00000022290
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat

Markers in Region
RH134511  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,830,008 - 93,830,202 (+)MAPPERmRatBN7.2
Rnor_6.09100,436,371 - 100,436,564NCBIRnor6.0
Rnor_5.09100,092,726 - 100,092,919UniSTSRnor5.0
RGSC_v3.4992,567,912 - 92,568,105UniSTSRGSC3.4
Celera991,364,964 - 91,365,157UniSTS
RH 3.4 Map9798.4UniSTS
Cytogenetic Map9q36UniSTS
BI290549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,830,288 - 93,830,475 (+)MAPPERmRatBN7.2
Rnor_6.09100,436,651 - 100,436,837NCBIRnor6.0
Rnor_5.09100,093,006 - 100,093,192UniSTSRnor5.0
RGSC_v3.4992,568,192 - 92,568,378UniSTSRGSC3.4
Celera991,365,244 - 91,365,430UniSTS
RH 3.4 Map9796.3UniSTS
Cytogenetic Map9q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 78 59 6 342 178 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001413841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF439714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF439716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022290   ⟹   ENSRNOP00000022290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9101,221,530 - 101,281,401 (+)Ensembl
mRatBN7.2 Ensembl993,774,119 - 93,830,694 (+)Ensembl
Rnor_6.0 Ensembl9100,380,515 - 100,437,056 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000147153   ⟹   ENSRNOP00000112793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9101,221,530 - 101,281,401 (+)Ensembl
RefSeq Acc Id: NM_001413841   ⟹   NP_001400770
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,530 - 101,281,401 (+)NCBI
mRatBN7.2993,774,122 - 93,834,003 (+)NCBI
RefSeq Acc Id: XM_039083765   ⟹   XP_038939693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,498 - 101,281,401 (+)NCBI
mRatBN7.2993,774,088 - 93,834,003 (+)NCBI
RefSeq Acc Id: XM_039083766   ⟹   XP_038939694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,270,873 (+)NCBI
mRatBN7.2993,774,088 - 93,823,473 (+)NCBI
RefSeq Acc Id: XM_039083768   ⟹   XP_038939696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,498 - 101,281,401 (+)NCBI
mRatBN7.2993,774,089 - 93,834,003 (+)NCBI
RefSeq Acc Id: XM_039083769   ⟹   XP_038939697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,263,307 (+)NCBI
mRatBN7.2993,774,088 - 93,815,907 (+)NCBI
RefSeq Acc Id: XM_063267325   ⟹   XP_063123395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,264,273 (+)NCBI
RefSeq Acc Id: XM_063267326   ⟹   XP_063123396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,263,307 (+)NCBI
RefSeq Acc Id: XR_005488918
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,270,996 (+)NCBI
mRatBN7.2993,774,088 - 93,824,214 (+)NCBI
RefSeq Acc Id: XR_005488919
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,270,996 (+)NCBI
mRatBN7.2993,774,088 - 93,824,212 (+)NCBI
RefSeq Acc Id: XR_005488921
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,221,497 - 101,263,621 (+)NCBI
mRatBN7.2993,774,088 - 93,816,227 (+)NCBI
Ensembl Acc Id: ENSRNOP00000022290   ⟸   ENSRNOT00000022290
RefSeq Acc Id: XP_038939693   ⟸   XM_039083765
- Peptide Label: isoform X1
- UniProtKB: A6JQY0 (UniProtKB/TrEMBL),   D3ZNR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939694   ⟸   XM_039083766
- Peptide Label: isoform X2
- UniProtKB: A6JQY0 (UniProtKB/TrEMBL),   D3ZNR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939697   ⟸   XM_039083769
- Peptide Label: isoform X5
- UniProtKB: A6JQY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939696   ⟸   XM_039083768
- Peptide Label: isoform X3
- UniProtKB: A6JQY0 (UniProtKB/TrEMBL),   D3ZNR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001400770   ⟸   NM_001413841
- Peptide Label: precursor
- UniProtKB: Q5ZQU0 (UniProtKB/Swiss-Prot),   Q336F3 (UniProtKB/Swiss-Prot),   A6JQY0 (UniProtKB/TrEMBL),   D3ZNR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123395   ⟸   XM_063267325
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123396   ⟸   XM_063267326
- Peptide Label: isoform X6
- UniProtKB: A6JQY1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112793   ⟸   ENSRNOT00000147153
Protein Domains
EGF-like   Fibronectin type-III   NIDO   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5ZQU0-F1-model_v2 AlphaFold Q5ZQU0 1-1403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696871
Promoter ID:EPDNEW_R7396
Type:single initiation site
Name:Sned1_1
Description:sushi, nidogen and EGF-like domains 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09100,380,518 - 100,380,578EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566079 AgrOrtholog
BioCyc Gene G2FUF-26652 BioCyc
Ensembl Genes ENSRNOG00000023548 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022290 ENTREZGENE
  ENSRNOT00000022290.7 UniProtKB/Swiss-Prot
  ENSRNOT00000147153 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_CS UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  NIDO_dom UniProtKB/Swiss-Prot
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot
NCBI Gene 316638 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 UniProtKB/Swiss-Prot
  NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1-RELATED UniProtKB/Swiss-Prot
Pfam EGF UniProtKB/Swiss-Prot
  fn3 UniProtKB/Swiss-Prot
  hEGF UniProtKB/Swiss-Prot
  NIDO UniProtKB/Swiss-Prot
PhenoGen Sned1 PhenoGen
PRINTS EGFBLOOD UniProtKB/Swiss-Prot
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  FN3 UniProtKB/Swiss-Prot
  NIDO UniProtKB/Swiss-Prot
  SUSHI UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023548 RatGTEx
SMART CCP UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  FN3 UniProtKB/Swiss-Prot
  NIDO UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
  SSF57184 UniProtKB/Swiss-Prot
  SSF57535 UniProtKB/Swiss-Prot
UniProt A6JQY0 ENTREZGENE, UniProtKB/TrEMBL
  A6JQY1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNR4 ENTREZGENE, UniProtKB/TrEMBL
  Q336F3 ENTREZGENE
  Q5ZQU0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q336F3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Sned1  sushi, nidogen and EGF-like domains 1  Sned1  insulin responsive sequence DNA binding protein-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Sned1  insulin responsive sequence DNA binding protein-1      Symbol and Name status set to provisional 70820 PROVISIONAL