Pinx1 (PIN2/TERF1 interacting, telomerase inhibitor 1) - Rat Genome Database

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Gene: Pinx1 (PIN2/TERF1 interacting, telomerase inhibitor 1) Rattus norvegicus
Analyze
Symbol: Pinx1
Name: PIN2/TERF1 interacting, telomerase inhibitor 1
RGD ID: 1566025
Description: Predicted to enable telomerase RNA binding activity and telomerase inhibitor activity. Predicted to be involved in several processes, including negative regulation of nitrogen compound metabolic process; positive regulation of protein localization to nucleolus; and protein localization to organelle. Predicted to act upstream of or within telomere maintenance via telomerase. Predicted to be located in several cellular components, including chromosome; nucleoplasm; and spindle. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human PINX1 (PIN2 (TERF1) interacting telomerase inhibitor 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305963; PIN2-interacting protein 1; Pin2-interacting protein X1; PIN2/TERF1-interacting telomerase inhibitor 1; RGD1566025; similar to Pin2-interacting protein X1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,273,805 - 42,333,047 (+)NCBIGRCr8
mRatBN7.21538,097,896 - 38,157,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,097,886 - 38,157,140 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,955,508 - 40,014,259 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,106,199 - 41,164,948 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,558,617 - 39,617,496 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,211,682 - 47,270,343 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,211,583 - 47,270,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,970,703 - 51,029,737 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41543,124,973 - 43,184,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1537,779,927 - 37,838,591 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome, telomeric region  (IEA,ISO)
kinetochore  (IEA,ISO)
mitochondrion  (IEA,ISO)
nuclear chromosome  (IEA,ISO)
nucleolus  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
spindle  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Association of PINX1 but not TEP1 Polymorphisms with Progression to Hepatocellular Carcinoma in Thai Patients with Chronic Hepatitis B Virus Infection. Sriprapun M, etal., Asian Pac J Cancer Prev. 2016;17(4):2019-25. doi: 10.7314/apjcp.2016.17.4.2019.
Additional References at PubMed
PMID:11701125   PMID:12477932   PMID:15381700   PMID:17624691   PMID:18202258   PMID:19265708   PMID:19393617   PMID:21119197   PMID:22749911   PMID:24415760   PMID:33819185  


Genomics

Comparative Map Data
Pinx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,273,805 - 42,333,047 (+)NCBIGRCr8
mRatBN7.21538,097,896 - 38,157,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,097,886 - 38,157,140 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,955,508 - 40,014,259 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,106,199 - 41,164,948 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,558,617 - 39,617,496 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,211,682 - 47,270,343 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,211,583 - 47,270,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,970,703 - 51,029,737 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41543,124,973 - 43,184,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1537,779,927 - 37,838,591 (+)NCBICelera
Cytogenetic Map15p12NCBI
PINX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38810,764,961 - 10,839,875 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl810,725,399 - 10,839,847 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl810,764,961 - 10,839,884 (-)EnsemblGRCh38hg38GRCh38
GRCh37810,622,471 - 10,697,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,660,294 - 10,734,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera89,750,922 - 9,825,196 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,553,144 - 9,627,372 (-)NCBIHuRef
CHM1_1810,688,381 - 10,762,380 (-)NCBICHM1_1
T2T-CHM13v2.088,899,172 - 8,974,128 (+)NCBIT2T-CHM13v2.0
Pinx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,097,728 - 64,157,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,097,813 - 64,157,308 (+)EnsemblGRCm39 Ensembl
GRCm381463,860,277 - 63,919,862 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,860,364 - 63,919,859 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,479,149 - 64,538,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,814,474 - 62,873,914 (+)NCBIMGSCv36mm8
Celera1461,637,517 - 61,696,912 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
Pinx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,284,166 - 52,362,206 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,284,378 - 52,361,924 (-)NCBIChiLan1.0ChiLan1.0
PINX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,220,919 - 27,297,382 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,253,071 - 3,329,606 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,366,819 - 8,443,359 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PINX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,090,244 - 27,182,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,021,704 - 27,181,968 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,746,795 - 27,839,000 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02527,245,097 - 27,337,408 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2527,244,824 - 27,336,999 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12527,199,192 - 27,291,630 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02527,093,374 - 27,185,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02527,247,284 - 27,339,666 (+)NCBIUU_Cfam_GSD_1.0
Pinx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,879,927 - 5,944,300 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366752,640,068 - 2,706,238 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366752,641,851 - 2,706,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PINX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1413,967,070 - 14,041,788 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11413,965,733 - 14,041,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,432,132 - 15,483,040 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PINX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,259,537 - 8,336,586 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl88,259,692 - 8,336,603 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605234,091,837 - 34,171,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pinx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475824,589,743 - 24,666,598 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475824,589,990 - 24,666,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pinx1
319 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:51
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000016027
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat

Markers in Region
RH128783  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21538,156,801 - 38,157,021 (+)MAPPERmRatBN7.2
Rnor_6.01547,270,002 - 47,270,221NCBIRnor6.0
Rnor_5.01551,029,396 - 51,029,615UniSTSRnor5.0
RGSC_v3.41543,184,268 - 43,184,487UniSTSRGSC3.4
Celera1537,838,485 - 37,838,704UniSTS
Cytogenetic Map15p12UniSTS
RH132666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21538,144,331 - 38,144,527 (+)MAPPERmRatBN7.2
Rnor_6.01547,258,112 - 47,258,307NCBIRnor6.0
Rnor_5.01551,017,506 - 51,017,701UniSTSRnor5.0
RGSC_v3.41543,171,798 - 43,171,993UniSTSRGSC3.4
Celera1537,826,007 - 37,826,202UniSTS
Cytogenetic Map15p12UniSTS
BQ195852  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21538,116,239 - 38,116,454 (+)MAPPERmRatBN7.2
Rnor_6.01547,229,722 - 47,229,936NCBIRnor6.0
Rnor_5.01550,989,116 - 50,989,330UniSTSRnor5.0
RGSC_v3.41543,143,541 - 43,143,755UniSTSRGSC3.4
Celera1537,798,008 - 37,798,222UniSTS
RH 3.4 Map15282.4UniSTS
Cytogenetic Map15p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 28 22 16 22 59 20 36 6
Low 1 17 29 19 3 19 8 11 15 15 5 5 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000016027   ⟹   ENSRNOP00000016027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1538,097,886 - 38,157,130 (+)Ensembl
Rnor_6.0 Ensembl1547,211,583 - 47,270,317 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102140   ⟹   ENSRNOP00000085367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1538,098,756 - 38,157,140 (+)Ensembl
RefSeq Acc Id: NM_001083337   ⟹   NP_001076806
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,273,805 - 42,333,047 (+)NCBI
mRatBN7.21538,097,896 - 38,157,143 (+)NCBI
Rnor_6.01547,211,682 - 47,270,108 (+)NCBI
Rnor_5.01550,970,703 - 51,029,737 (+)NCBI
RGSC_v3.41543,124,973 - 43,184,374 (+)RGD
Celera1537,779,927 - 37,838,591 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252181   ⟹   XP_006252243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,277,104 - 42,333,047 (+)NCBI
mRatBN7.21538,100,334 - 38,157,143 (+)NCBI
Rnor_6.01547,213,876 - 47,270,343 (+)NCBI
Rnor_5.01550,970,703 - 51,029,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093329   ⟹   XP_038949257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,277,104 - 42,292,661 (+)NCBI
mRatBN7.21538,100,334 - 38,116,756 (+)NCBI
RefSeq Acc Id: XM_039093331   ⟹   XP_038949259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,277,104 - 42,333,047 (+)NCBI
mRatBN7.21538,100,334 - 38,156,547 (+)NCBI
RefSeq Acc Id: XM_063274286   ⟹   XP_063130356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,273,814 - 42,292,661 (+)NCBI
RefSeq Acc Id: XR_010057820
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,277,104 - 42,332,518 (+)NCBI
RefSeq Acc Id: XR_010057821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,277,104 - 42,332,518 (+)NCBI
RefSeq Acc Id: XR_010057822
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81542,273,814 - 42,332,518 (+)NCBI
RefSeq Acc Id: NP_001076806   ⟸   NM_001083337
- UniProtKB: A4L691 (UniProtKB/Swiss-Prot),   B0BMT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252243   ⟸   XM_006252181
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A1H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016027   ⟸   ENSRNOT00000016027
RefSeq Acc Id: XP_038949259   ⟸   XM_039093331
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949257   ⟸   XM_039093329
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000085367   ⟸   ENSRNOT00000102140
RefSeq Acc Id: XP_063130356   ⟸   XM_063274286
- Peptide Label: isoform X4
Protein Domains
G-patch

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A4L691-F1-model_v2 AlphaFold A4L691 1-331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699781
Promoter ID:EPDNEW_R10303
Type:initiation region
Name:Pinx1_1
Description:PIN2/TERF1 interacting, telomerase inhibitor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01547,211,575 - 47,211,635EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566025 AgrOrtholog
BioCyc Gene G2FUF-13403 BioCyc
Ensembl Genes ENSRNOG00000012012 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055006596 UniProtKB/Swiss-Prot
  ENSRNOG00060020615 UniProtKB/Swiss-Prot
  ENSRNOG00065030745 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016027 ENTREZGENE
  ENSRNOT00000016027.6 UniProtKB/Swiss-Prot
  ENSRNOT00000102140.1 UniProtKB/TrEMBL
  ENSRNOT00055010725 UniProtKB/Swiss-Prot
  ENSRNOT00060035725 UniProtKB/Swiss-Prot
  ENSRNOT00065052989 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:9088212 IMAGE-MGC_LOAD
InterPro G_patch_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305963 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:187218 IMAGE-MGC_LOAD
NCBI Gene 305963 ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIN2/TERF1-INTERACTING TELOMERASE INHIBITOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam G-patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pinx1 PhenoGen
PROSITE G_PATCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012012 RatGTEx
  ENSRNOG00055006596 RatGTEx
  ENSRNOG00060020615 RatGTEx
  ENSRNOG00065030745 RatGTEx
SMART G_patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A1H3 ENTREZGENE, UniProtKB/TrEMBL
  A4L691 ENTREZGENE
  B0BMT3 ENTREZGENE, UniProtKB/TrEMBL
  PINX1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Pinx1  PIN2/TERF1 interacting, telomerase inhibitor 1  Pinx1  PIN2-interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Pinx1  PIN2-interacting protein 1  RGD1566025_predicted  similar to Pin2-interacting protein X1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1566025_predicted  similar to Pin2-interacting protein X1 (predicted)  LOC305963  similar to Pin2-interacting protein X1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC305963  similar to Pin2-interacting protein X1      Symbol and Name status set to provisional 70820 PROVISIONAL