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Gene: F8a1 (coagulation factor VIII-associated 1) Rattus norvegicus

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Symbol:

F8a1

Name:

coagulation factor VIII-associated 1

RGD ID:

1566014

Description:

Involved in vesicle cytoskeletal trafficking. Predicted to be located in nuclear body. Predicted to be active in early endosome. Orthologous to several human genes including F8A1 (coagulation factor VIII associated 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; genistein.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coagulation factor VIII-associated (intronic transcript) 1; F8a; factor 8-associated gene A; factor VIII intron 22 protein; Hap40; huntingtin-associated protein 40; LOC501661; RGD1566014; similar to Factor VIII associated protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	F8A1 (coagulation factor VIII associated 1)	HGNC	Ensembl, HomoloGene, Inparanoid, OrthoDB, Panther
Pan paniscus (bonobo/pygmy chimpanzee):	F8A1 (coagulation factor VIII associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	F8a1 (coagulation factor VIII associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	F8A1 (coagulation factor VIII-associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	F8A1 (coagulation factor VIII associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	F8A2 (coagulation factor VIII associated 2)	HGNC	Ensembl, HomoloGene, Panther
Homo sapiens (human):	F8A3 (coagulation factor VIII associated 3)	HGNC	Ensembl, HomoloGene
Alliance orthologs ³
Homo sapiens (human):	F8A1 (coagulation factor VIII associated 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	F8A2 (coagulation factor VIII associated 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	F8A3 (coagulation factor VIII associated 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	F8a (factor 8-associated gene A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:101679	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8134	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	f8a1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	155,977,859 - 155,979,373 (+)	NCBI		GRCr8
mRatBN7.2	X	150,957,357 - 150,958,871 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	150,916,679 - 150,960,168 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,127,612 - 153,129,126 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,659,958 - 156,661,472 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,203,086 - 154,204,600 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	147,021,436 - 147,022,950 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	147,021,436 - 147,022,950 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	153,316,591 - 153,318,105 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,089,210 - 159,090,724 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	131,899,603 - 131,901,117 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

autosomal hemophilia A (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

factor VIII deficiency (ISO)

favism (ISO)

immunodeficiency 33 (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

Splenomegaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

genistein (EXP)

indometacin (ISO)

iron dichloride (ISO)

menadione (ISO)

methapyrilene (EXP)

phenobarbital (ISO)

piroxicam (ISO)

silver atom (ISO)

silver(0) (ISO)

Soman (EXP)

temozolomide (ISO)

thioacetamide (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of proteasomal protein catabolic process (ISO,ISS)

vesicle cytoskeletal trafficking (IBA,IMP)

Cellular Component

cytoplasm (IEA)

early endosome (IBA,IEA,ISO,ISS)

endosome (IEA)

nuclear body (IEA,ISS)

nucleus (IEA,ISO)

Molecular Function

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Huntingtin-HAP40 complex is a novel Rab5 effector that regulates early endosome motility and is up-regulated in Huntington's disease.	Pal A, etal., J Cell Biol. 2006 Feb 13;172(4):605-18. doi: 10.1083/jcb.200509091.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11035034	PMID:23749422	PMID:27815841

Genomics

Comparative Map Data

F8a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	155,977,859 - 155,979,373 (+)	NCBI		GRCr8
mRatBN7.2	X	150,957,357 - 150,958,871 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	150,916,679 - 150,960,168 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,127,612 - 153,129,126 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,659,958 - 156,661,472 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,203,086 - 154,204,600 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	147,021,436 - 147,022,950 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	147,021,436 - 147,022,950 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	153,316,591 - 153,318,105 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,089,210 - 159,090,724 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	131,899,603 - 131,901,117 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

F8A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	154,886,355 - 154,888,061 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	154,886,355 - 154,888,061 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	154,114,630 - 154,116,336 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	153,767,829 - 153,769,530 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	154,250,279 - 154,251,980	NCBI
Celera	X	154,273,254 - 154,274,955 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	142,658,135 - 143,157,866 (+)	NCBI		HuRef
CHM1_1	X	154,027,043 - 154,027,955 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	153,122,763 - 153,124,469 (+)	NCBI		T2T-CHM13v2.0

F8A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	154,865,113 - 154,866,796 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	154,868,721 - 154,870,402 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	144,366,123 - 144,367,842 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

F8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	119,875,412 - 119,878,722 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936927	234,162 - 236,881 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

F8A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	125,280,978 - 125,282,771 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	143,200,367 - 143,202,144 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

F8A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	129,131,267 - 129,133,575 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	67,107,976 - 67,109,839 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in F8a1
2 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	21
Count of miRNA genes:	21
Interacting mature miRNAs:	21
Transcripts:	ENSRNOT00000042490
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

Markers in Region

F8a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	150,957,762 - 150,958,097 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	147,022,210 - 147,022,544	NCBI	Rnor6.0
Rnor_5.0	1	153,317,365 - 153,317,699	UniSTS	Rnor5.0
RGSC_v3.4	X	159,089,984 - 159,090,318	UniSTS	RGSC3.4
Celera	1	131,900,377 - 131,900,711	UniSTS
Cytogenetic Map	X	q37	UniSTS

UniSTS:496784

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	150,958,530 - 150,958,748 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	147,021,559 - 147,021,776	NCBI	Rnor6.0
Rnor_5.0	1	153,316,714 - 153,316,931	UniSTS	Rnor5.0
RGSC_v3.4	X	159,089,333 - 159,089,550	UniSTS	RGSC3.4
Celera	1	131,899,726 - 131,899,943	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042490 ⟹ ENSRNOP00000067799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	147,021,436 - 147,022,950 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094156 ⟹ ENSRNOP00000092499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	150,916,679 - 150,960,168 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096631 ⟹ ENSRNOP00000086463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	150,931,850 - 150,960,168 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096861 ⟹ ENSRNOP00000092056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	150,946,715 - 150,960,168 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102135 ⟹ ENSRNOP00000077834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	150,946,698 - 150,960,168 (-)	Ensembl

RefSeq Acc Id:

NM_001109323 ⟹ NP_001102793

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	155,977,859 - 155,979,373 (+)	NCBI
mRatBN7.2	X	150,957,357 - 150,958,871 (-)	NCBI
Rnor_6.0	1	147,021,436 - 147,022,950 (+)	NCBI
Rnor_5.0	1	153,316,591 - 153,318,105 (+)	NCBI
RGSC_v3.4	X	159,089,210 - 159,090,724 (+)	RGD
Celera	1	131,899,603 - 131,901,117 (+)	NCBI

Sequence:

show sequence

CCTCAGCCCTCCCTCAACCGGAAGTAAGCCAGCGCGGCTAGCCGGTCAACATGGCGGCGGGCTC
CGCGTCGTCCCTGGGCGGAGGCTCCTGGCCAGGCTCTGAGGCTGGGGACTTCTTGGCCCGCTAC
CGGCAGGTGTCCAACAAGCTCAAGAAGCGCTTCTTGCGGAAGCCGAACGTGGCGGAGGCCGGGG
AGCAGTTCGCACAGCTGGCCCGGGAGCTGCGAGCTCAAGAGTGCCTGCCTTATGCCGCCTGGTG
CCAGCTGGCTGTGGCACGCTGCCAGCAGGCGCTCTTCCATGGGCCCGGGGAAGCGCTGGCCCTT
ACAGAGGCGGCCCGACTTTTCCTGAGGCAGGAGTGCGATGCGCGCCAACGCCTGGGCTGTCCTG
CGGCTTATGGGGAGCCTTTGCAGGCGGCCGCCAGCGCCCTTGGCGCCGCCGTGCGCCTGCACCT
TGAGCTGGGCCAGCCCGCCGCTGCTGCCGCACTGTGCCTAGAACTGGCTGCCGCCCTTCGCGCT
GTGGGCCAGCCAGCCGCTGCTGCAGGTCACTTTCAACGTGCTGCCCAGCTGCACCTGCCCCTGA
TGCCACTGGCCGCGCTGCAGGCACTTGGTGATGCTGCCTCCTGCCAGTTGCTGGCGCGCGACTA
CACTGGCGCCCTGGCGGTTTTTACACGCATGCAACGCCTGGCACGGGAGCATGGGGGCCACCCG
GTACAGCAACCCGAGCTGCCGCAGCAGCTGCCTTCTGTGCCTCAGCCATCTCTGCCGGGACCCC
AGCCGAGACCTGTCTTGGGCTCTACCTTGCCCCTGCCGCTGCCCCCGGACCACGCCCCAGGCTC
TGTTGCGCAGTCACCTGGTACACTCGGTGCCTTCGCTGACGTTCTTGTCAGGTGTGAGGTGTCC
CGTGTATTGTTGCTGCTGCTCCTGCAACCACCGCCTGCCAAGCTGCTGCCTGAGCACGCCCAGA
CCCTGGAGAAGTACTCTTGGGAGGCTTTCGATGGCCATGGCCAGGATAGCAGCGGCCAGCTTCC
AGAGGAGCTGTTTTTGTTATTGCAGTCCCTGGTCATGGCTGCCCACGAAAAGGATACTGAAGGC
ATCAAGAAGCTGCAGGTGGAGATGTGGCCACTGCTAACTGCTGAGCAGAACCACCTCCTCCACC
TCGTTCTGCAGGAAACCATCTCTCCCTCGGGACAGGGGGTCTGATAAGTCACCTTCCTAACAAC
TTGCTTAATCTTTGGGGACAGGTGATGAAACACGTGGTCTAGCTTCTGGTTTTTGCTTCTTTGT
TTTGTTTCATTTCTATTGTCACTGTGGTAATTTAGCTTTGTGTGCCTACCTGGTTACTTAAATT
AGTGCCCTCCAATTCCATCCATATTGCCTCAAATGGGGTAACTTCGTCCTTAAGGCTGAAGGAA
ATTCCACTGTGTAATCTGCTTTCTTTACGCATTGGTCTGTAGTTGGATAATGTTGATTAATTTT
CCTGGCTGTTCTAGGTACAGCTTCAATAAACATGGAAGGACAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102793	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82845	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000077834.1
	ENSRNOP00000086463.1
	ENSRNOP00000092056.1
	ENSRNOP00000092499.1
	ENSRNOP00000105572
GenBank Protein	M0RDU0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001102793 ⟸ NM_001109323

- UniProtKB:

M0RDU0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAGSASSLGGGSWPGSEAGDFLARYRQVSNKLKKRFLRKPNVAEAGEQFAQLARELRAQECLP
YAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQECDARQRLGCPAAYGEPLQAAASALGAA
VRLHLELGQPAAAAALCLELAAALRAVGQPAAAAGHFQRAAQLHLPLMPLAALQALGDAASCQL
LARDYTGALAVFTRMQRLAREHGGHPVQQPELPQQLPSVPQPSLPGPQPRPVLGSTLPLPLPPD
HAPGSVAQSPGTLGAFADVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDGHGQDS
SGQLPEELFLLLQSLVMAAHEKDTEGIKKLQVEMWPLLTAEQNHLLHLVLQETISPSGQGV

hide sequence

Ensembl Acc Id:

ENSRNOP00000067799 ⟸ ENSRNOT00000042490

Ensembl Acc Id:

ENSRNOP00000092499 ⟸ ENSRNOT00000094156

Ensembl Acc Id:

ENSRNOP00000092056 ⟸ ENSRNOT00000096861

Ensembl Acc Id:

ENSRNOP00000086463 ⟸ ENSRNOT00000096631

Ensembl Acc Id:

ENSRNOP00000077834 ⟸ ENSRNOT00000102135

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RDU0-F1-model_v2	AlphaFold	M0RDU0	1-381	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690172

Promoter ID:

EPDNEW_R696

Type:

multiple initiation site

Name:

F8a1_1

Description:

coagulation factor VIII-associated 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	147,021,466 - 147,021,526	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566014	AgrOrtholog
BioCyc Gene	G2FUF-686	BioCyc
Ensembl Genes	ENSRNOG00000037327	Ensembl
	ENSRNOG00000070033	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000080664	ENTREZGENE
Ensembl Transcript	ENSRNOT00000094156.1	UniProtKB/Swiss-Prot
	ENSRNOT00000096631.1	UniProtKB/Swiss-Prot
	ENSRNOT00000096861.1	UniProtKB/Swiss-Prot
	ENSRNOT00000102135.1	UniProtKB/Swiss-Prot
	ENSRNOT00000142215	ENTREZGENE
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
InterPro	F8A	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:501661	UniProtKB/Swiss-Prot
NCBI Gene	501661	ENTREZGENE
PANTHER	40-KDA HUNTINGTIN-ASSOCIATED PROTEIN	UniProtKB/Swiss-Prot
	PTHR16797	UniProtKB/Swiss-Prot
PhenoGen	F8a1	PhenoGen
RatGTEx	ENSRNOG00000037327	RatGTEx
	ENSRNOG00000070033	RatGTEx
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	HAP40_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	F8a1	coagulation factor VIII-associated 1	F8a1	coagulation factor VIII-associated (intronic transcript) 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-17	F8a1	coagulation factor VIII-associated (intronic transcript) 1	F8a	factor 8-associated gene A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	F8a	factor 8-associated gene A	RGD1566014_predicted	similar to Factor VIII associated protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1566014_predicted	similar to Factor VIII associated protein (predicted)	LOC501661	similar to Factor VIII associated protein	Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar