 Gene-Chemical Interaction Annotations
References - curatedGenomics
Comparative Map Data
QTLs in Region (Rnor_6.0)
RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | 1576309 | Emca7 | Estrogen-induced mammary cancer QTL 7 | 4 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 2537030 | 111715717 | Rat | 4145119 | Mcs25 | Mammary carcinoma susceptibility QTL 25 | 0.0001 | mammary gland integrity trait (VT:0010552) | percentage of deaths in a study population during a period of time (CMO:0001024) | 6 | 7009971 | 115379601 | Rat | 634330 | Pia16 | Pristane induced arthritis QTL 16 | 3.9 | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 6 | 48432758 | 108268790 | Rat | 1558641 | Cm47 | Cardiac mass QTL 47 | 2.9 | 0.001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 6 | 60606431 | 108154445 | Rat | 6893332 | Cm74 | Cardiac mass QTL 74 | 0.4 | 0.64 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 6 | 60606431 | 108154445 | Rat | 70176 | Mcsm1 | Mammary carcinoma susceptibility modifier QTL 1 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 62263348 | 107263348 | Rat | 12801471 | Schws9 | Schwannoma susceptibility QTL 9 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 66129520 | 111129520 | Rat | 731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 68781170 | 147991367 | Rat | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 68781170 | 147991367 | Rat | 1641904 | Alcrsp4 | Alcohol response QTL 4 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 6 | 71206251 | 116206251 | Rat | 1300075 | Glom7 | Glomerulus QTL 7 | 5.6 | 0.0000002 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 6 | 75449871 | 120449871 | Rat | 1331789 | Rf37 | Renal function QTL 37 | 3.224 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 6 | 75623277 | 120276465 | Rat | 70196 | BpQTLcluster7 | Blood pressure QTL cluster 7 | 6.82 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 75623277 | 120623277 | Rat | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 75623277 | 136143011 | Rat | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 75623277 | 136426962 | Rat | 1581550 | Pur8 | Proteinuria QTL 8 | total urine protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 75623393 | 136142742 | Rat | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 75623393 | 136142742 | Rat | 724524 | Uae2 | Urinary albumin excretion QTL 2 | 2.7 | 0.0005 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 76902247 | 114203334 | Rat | 2293837 | Kiddil1 | Kidney dilation QTL 1 | 3.7 | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 84763275 | 108464097 | Rat | 2293842 | Kiddil3 | Kidney dilation QTL 3 | 4.3 | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 84763275 | 108464097 | Rat | 737827 | Hcar11 | Hepatocarcinoma resistance QTL 11 | 4.4 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 6 | 86422697 | 115379601 | Rat | 1576302 | Schws4 | Schwannoma susceptibility QTL 4 | 0.0078 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 87418448 | 111129520 | Rat | 738034 | Anxrr5 | Anxiety related response QTL 5 | 5.9 | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 6 | 88507712 | 133507712 | Rat | 724513 | Uae14 | Urinary albumin excretion QTL 14 | 6.5 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 88996335 | 139410483 | Rat | 10054138 | Gmadr3 | Adrenal mass QTL 3 | 3.68 | 0.00045 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 6 | 89631358 | 134631358 | Rat | 10054123 | Srcrt6 | Stress Responsive Cort QTL 6 | 2.5 | 0.0043 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 89631358 | 134631358 | Rat | 1300076 | Glom8 | Glomerulus QTL 8 | 7 | 0.000000009 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 6 | 91703409 | 136703409 | Rat | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | respiration trait (VT:0001943) | minute ventilation (VE) (CMO:0000132) | 6 | 92879510 | 137879510 | Rat | 1331722 | Thshl1 | Thyroid stimulating hormone level QTL 1 | 11.7 | 0.0001 | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 6 | 93706176 | 111134673 | Rat | | 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miRNA Target Status
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| High | ||||||||||||||
| Medium | 7 | |||||||||||||
| Low | 12 | 11 | 23 | 15 | 4 | 26 | 25 | 11 | 4 | 14 | ||||
| Below cutoff | 3 | 32 | 4 | 7 | 15 | 15 | 6 | 8 |
View RNA-SEQ Expression Data
Sequence
Nucleotide SequencesReference Sequences
| RefSeq Acc Id: | NM_001191613 ⟹ NP_001178542 | |||||||||||||||||||
| RefSeq Status: | PROVISIONAL | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
ATGATTGAAAGTGAACACTTTAATCGAGGTGAAATCATTAAAGAACTGTGTTTGTGCAATGGTThide sequence |
| RefSeq Acc Id: | XM_006240200 ⟹ XP_006240262 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GCTGCGGGAGGGGGCGTGTCTGGGAACCGTCCGGTGACCTCACTGCTCCCCGCCATGCTTGGGGhide sequence |
| RefSeq Acc Id: | XM_006240201 ⟹ XP_006240263 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XM_006240202 ⟹ XP_006240264 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XM_006240203 ⟹ XP_006240265 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CATCCCTTCTTGACCCAGAGGGAGAGCGGGTTTCCTAGGCAACCTCAGTGGTGGGTCAGTACAChide sequence |
| RefSeq Acc Id: | XM_008764711 ⟹ XP_008762933 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XM_008764712 ⟹ XP_008762934 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XM_008764714 ⟹ XP_008762936 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XM_008764715 ⟹ XP_008762937 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
| RefSeq Acc Id: | XR_593056 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
TTGAAATTCTAACTCCATGGCAATTAGGAGGAAGGGCTTTGGGGAGGTTAGATCATGAGGAAAGhide sequence |
Protein SequencesReference Sequences
| RefSeq Acc Id: | NP_001178542 ⟸ NM_001191613 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_006240264 ⟸ XM_006240202 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_006240263 ⟸ XM_006240201 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_006240262 ⟸ XM_006240200 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_006240265 ⟸ XM_006240203 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_008762933 ⟸ XM_008764711 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_008762934 ⟸ XM_008764712 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_008762936 ⟸ XM_008764714 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
| RefSeq Acc Id: | XP_008762937 ⟸ XM_008764715 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQhide sequence |
TranscriptomePromoters| RGD ID: | 13694657 | |||||||||
| Promoter ID: | EPDNEW_R5181 | |||||||||
| Type: | single initiation site | |||||||||
| Name: | Lrrc9_1 | |||||||||
| Description: | leucine rich repeat containing 9 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1565716 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000005409 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000007339 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000007339 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 3.80.10.10 | UniProtKB/TrEMBL |
| InterPro | L_dom-like | UniProtKB/TrEMBL |
| Leu-rich_rpt | UniProtKB/TrEMBL | |
| Leu-rich_rpt_typical-subtyp | UniProtKB/TrEMBL | |
| NCBI Gene | 299129 | ENTREZGENE |
| PhenoGen | Lrrc9 | PhenoGen |
| PROSITE | LRR | UniProtKB/TrEMBL |
| SMART | LRR_TYP | UniProtKB/TrEMBL |
| UniGene | Rn.210761 | ENTREZGENE |
| UniProt | D4AAU7_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-03-07 | Lrrc9 | leucine rich repeat containing 9 | RGD1565716_predicted | similar to RIKEN cDNA 4921529O18 (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-03-07 | RGD1565716_predicted | similar to RIKEN cDNA 4921529O18 (predicted) | LOC299129 | similar to RIKEN cDNA 4921529O18 | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC299129 | similar to RIKEN cDNA 4921529O18 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Lrrc9 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1565716 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-08-20 |
| Status: | ACTIVE |
