Gene: LOC361914 (similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12) Rattus norvegicus
Analyze
Symbol:
LOC361914 (Ensembl: Slc7a12)
Name:
similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 (Ensembl:solute carrier family 7 (cationic amino acid transporter, y+ system), member 12)
RGD ID:
1565475
Description:
Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport.
Type:
protein-coding
Previously known as:
hypothetical protein LOC361914; uncharacterized protein LOC361914
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mRatBN7.2 Ensembl 2 87,079,749 - 87,146,875 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 2 88,453,792 - 88,553,113 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 88,453,812 - 88,553,086 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 108,221,919 - 108,325,908 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 88,620,187 - 88,687,967 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 2 82,856,621 - 82,921,454 (-) NCBI Celera Cytogenetic Map 2 q23 NCBI
References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 126 Count of miRNA genes: 91 Interacting mature miRNAs: 98 Transcripts: ENSRNOT00000042494 Prediction methods: Microtar, Miranda, Rnahybrid Result types: miRGate_prediction
Markers in Region
RH131323
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 2 88,474,867 - 88,475,052 NCBI Rnor6.0 Rnor_5.0 2 108,242,994 - 108,243,179 UniSTS Rnor5.0 RGSC_v3.4 2 88,632,578 - 88,632,763 UniSTS RGSC3.4 RGSC_v3.4 2 88,632,578 - 88,633,728 UniSTS RGSC3.4 Celera 2 82,868,995 - 82,869,180 UniSTS RH 3.4 Map 2 534.3 UniSTS Cytogenetic Map 2 q23 UniSTS
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
appendage
High
2
Medium
11
Low
2
8
25
9
18
9
8
8
9
6
8
10
8
Below cutoff
1
2
1
1
1
1
1
2
8
2
1
Sequence
RefSeq Acc Id:
ENSRNOT00000042494 ⟹ ENSRNOP00000040882
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 Ensembl 2 88,453,812 - 88,553,086 (-) Ensembl
RefSeq Acc Id:
ENSRNOT00000051741 ⟹ ENSRNOP00000050128
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 2 87,079,749 - 87,146,875 (-) Ensembl
RefSeq Acc Id:
NM_001017465 ⟹ NP_001017465
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 2 88,453,792 - 88,553,086 (-) NCBI Rnor_5.0 2 108,221,919 - 108,325,908 (-) NCBI RGSC_v3.4 2 88,620,187 - 88,687,967 (-) RGD Celera 2 82,856,621 - 82,921,454 (-) RGD
Sequence:
CAGGGTTTTACACAAATTGACAGAGAAGCATTATAAAGAAAAATTGTATTTTTCAGTATTTGAA AGAGCAAAAAGGCATAACCATGCAACTCTTGAGAGCACTGGGATTTTTTCATGTAAACATGTTC TTGTTTAGTGCCACCATTGGTACAGGGATTTTTGTGTCTCCTAAAGCAGTATTAAAATACTGCT CACTGAACATCCCTATCTTCTTAAGTGTTTGGGCAGGCTGTGGCCTGCTGAGCATGATGAATGC TGTCTGTCTTGCAGAGATAGCAGCCACCTACCCTGTGAGTGGAGCATCTTACTATTTCCTCAAA AGAGCTCTTGGATCCTCTGTTGCTTTCCTCAGTATCTGGATTAAAATTTTTGCTCGTCCTCTAG GCATCAGTGCTCAGTGCTTGGTAATAGCTAGTTCGCTAATCCAGTGTTTCTATTTGGGATGCCA AGCTCCAGAGCTACCAAAGAAATGTCTGGCTTTGGCTATTTTGTGGTCATTTGGAATTCTAAGT GCTAAAGGTATAAAAACCGTGGCTTGGTTTAATACTATCAGCAGTTTGATGAAGTTGAGTGTTC TTTGTCTCATTTCAATAACTGGAATTGTGCTGTTAGTGATTGGCAAAAAGGAGAATGTGTCCAG GCTTGAGAATGCATTGGAGGCTGAACTTCCTAATGTCTCACAGATTGCAGAAGCCATTCTCCAA GTGTACTATGCATATCTAGGATCATCAGTCCTCATCATCATAGCAGGAGAAATAAAAAGGCCTG CTGAAACAATTCCAAAATCAATAATTTATGGTCTATCTGTTGTGACTATGTTATACTTACTGAC TAATGTATCATTCGTGGCAGTTTTGACATCTGAGGAAATCATCTCTTCAGATTCTGTTGCTGTG ACATGGATGAACAGAGTCTTTCCTTCGATGCAATGGATAATTTCTTTGTTGACCTCAGCTTTCC TATTTGGCTCCGTTTCTTGTGGAATAGTTTCAGCATCAAGAATGTTCTTTGTCGCAAGTCAAGA TGGACAGTTTCCTTTCATCTACTCAATGCTTAATGACCATCACTCTCCAGTAGTAGCTGACATA CAAGCTGTTATTTTATCTTCTGTTGGAATAATATCTTCAAATATGATCTATTTAGTAAAATATG TTGGTCTAGGAGCATGGTGTTTAAATTTGCCGAATATGATTGGGTTGCTTAAACTAAGGTACCA GAACCCTGACCTACCAAGACCTTATAAGGTACGGCTGCTGTTTTTATTTGGATCTATAGCTTCA TCGCTCTTCCTCATTCTCACACCAGTGATTCAGTCTCCCAGTACAGAGCACGTCTATCAAGTTG TGTTTCTCTTCTGTGGACTGCTGTGTTATTGGCTTCAAGCTTACCTCAATAGACATGGTGTTTG TTTTAATAGAATCACCTGCTACTGGCAATTACTTTTCAATGTCTCCCCATCTGAACACCCAGAA AAATTAATTCCTTCTCTAAATCCCATTAAAGTAGAAGTAACTGCATAGGTAGCAGAGAATAGCC TTGTTGGGGCACCAGGGGAAGGGGAAGCGCTTGGTCCTACCAAGGTTGGACCCCCAGTGCAGGG AAATATGGGGGGGGGCGGGCAAAAAGGGGACACATAGGGGGAATACCCATATGAGGAAGGGGGA GGGGAGGGAACGGCGGCTTATGGACAGGAAACCGGGAAGGGAAATAACATTTGAAATGTAAGTA AAGAAGTATATCTAATAAAAAATTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAA
hide sequence
RefSeq Acc Id:
XM_006232112 ⟹ XP_006232174
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 2 88,453,890 - 88,553,113 (-) NCBI Rnor_5.0 2 108,221,919 - 108,325,908 (-) NCBI
Sequence:
CTTTATCAAAAGCAATACCCTGTTTGACAGGGTTTTACACAAATTGACAGAGAAGCATTATAAA GAAAAATTGTATTTTTCAGTATTTGAAAGAGCAAAAAGGCATAACCATGCAACTCTTGAGAGCA CTGGGATTTTTTCATGTAAACATGTTCTTGTTTAGTGCCACCATTGGTACAGGGATTTTTGTGT CTCCTAAAGCAGTATTAAAATACTGCTCACTGAACATCCCTATCTTCTTAAGTGTTTGGGCAGG CTGTGGCCTGCTGAGCATGATGAATGCTGTCTGTCTTGCAGAGATAGCAGCCACCTACCCTGTG AGTGGAGCATCTTACTATTTCCTCAAAAGAGCTCTTGGATCCTCTGTTGCTTTCCTCAGTATCT GGATTAAAATTTTTGCTCGTCCTCTAGGCATCAGTGCTCAGTGCTTGGTAATAGCTAGTTCGCT AATCCAGTGTTTCTATTTGGGATGCCAAGCTCCAGAGCTACCAAAGAAATGTCTGGCTTTGGCT ATTTTGTGGTCATTTGGAATTCTAAGTGCTAAAGTGATTGGCAAAAAGGAGAATGTGTCCAGGC TTGAGAATGCATTGGAGGCTGAACTTCCTAATGTCTCACAGATTGCAGAAGCCATTCTCCAAGT GTACTATGCATATCTAGGATCATCAGTCCTCATCATCATAGCAGGAGAAATAAAAAGGCCTGCT GAAACAATTCCAAAATCAATAATTTATGGTCTATCTGTTGTGACTATGTTATACTTACTGACTA ATGTATCATTCGTGGCAGTTTTGACATCTGAGGAAATCATCTCTTCAGATTCTGTTGCTGTGAC ATGGATGAACAGAGTCTTTCCTTCGATGCAATGGATAATTTCTTTGTTGACCTCAGCTTTCCTA TTTGGCTCCGTTTCTTGTGGAATAGTTTCAGCATCAAGAATGTTCTTTGTCGCAAGTCAAGATG GACAGTTTCCTTTCATCTACTCAATGCTTAATGACCATCACTCTCCAGTAGTAGCTGACATACA AGCTGTTATTTTATCTTCTGTTGGAATAATATCTTCAAATATGATCTATTTAGTAAAATATGTT GGTCTAGGAGCATGGTGTTTAAATTTGCCGAATATGATTGGGTTGCTTAAACTAAGGTACCAGA ACCCTGACCTACCAAGACCTTATAAGGTACGGCTGCTGTTTTTATTTGGATCTATAGCTTCATC GCTCTTCCTCATTCTCACACCAGTGATTCAGTCTCCCAGTACAGAGCACGTCTATCAAGTTGTG TTTCTCTTCTGTGGACTGCTGTGTTATTGGCTTCAAGCTTACCTCAATAGACATGGTGTTTGTT TTAATAGAATCACCTGCTACTGGCAATTACTTTTCAATGTCTCCCCATCTGAACACCCAGAAAA ATTAATTCCTTCTCTAAATCCCATTAAAGTAGAAGTAACTGCATAGGTAGCAGAGAATAGCCTT GTTGGGGCACCAGGGGAAGGGGAAGCGCTTGGTCCTACCAAGGTTGGACCCCCAGTGCAGGGAA ATATGGGGGGGGGCGGGCAAAAAGGGGACACATAGGGGGAATACCCATATGAGGAAGGGGG
hide sequence
RefSeq Acc Id:
NP_001017465 ⟸ NM_001017465
- Sequence:
MQLLRALGFFHVNMFLFSATIGTGIFVSPKAVLKYCSLNIPIFLSVWAGCGLLSMMNAVCLAEI AATYPVSGASYYFLKRALGSSVAFLSIWIKIFARPLGISAQCLVIASSLIQCFYLGCQAPELPK KCLALAILWSFGILSAKGIKTVAWFNTISSLMKLSVLCLISITGIVLLVIGKKENVSRLENALE AELPNVSQIAEAILQVYYAYLGSSVLIIIAGEIKRPAETIPKSIIYGLSVVTMLYLLTNVSFVA VLTSEEIISSDSVAVTWMNRVFPSMQWIISLLTSAFLFGSVSCGIVSASRMFFVASQDGQFPFI YSMLNDHHSPVVADIQAVILSSVGIISSNMIYLVKYVGLGAWCLNLPNMIGLLKLRYQNPDLPR PYKVRLLFLFGSIASSLFLILTPVIQSPSTEHVYQVVFLFCGLLCYWLQAYLNRHGVCFNRITC YWQLLFNVSPSEHPEKLIPSLNPIKVEVTA
hide sequence
RefSeq Acc Id:
XP_006232174 ⟸ XM_006232112
- Peptide Label:
isoform X1
- Sequence:
MQLLRALGFFHVNMFLFSATIGTGIFVSPKAVLKYCSLNIPIFLSVWAGCGLLSMMNAVCLAEI AATYPVSGASYYFLKRALGSSVAFLSIWIKIFARPLGISAQCLVIASSLIQCFYLGCQAPELPK KCLALAILWSFGILSAKVIGKKENVSRLENALEAELPNVSQIAEAILQVYYAYLGSSVLIIIAG EIKRPAETIPKSIIYGLSVVTMLYLLTNVSFVAVLTSEEIISSDSVAVTWMNRVFPSMQWIISL LTSAFLFGSVSCGIVSASRMFFVASQDGQFPFIYSMLNDHHSPVVADIQAVILSSVGIISSNMI YLVKYVGLGAWCLNLPNMIGLLKLRYQNPDLPRPYKVRLLFLFGSIASSLFLILTPVIQSPSTE HVYQVVFLFCGLLCYWLQAYLNRHGVCFNRITCYWQLLFNVSPSEHPEKLIPSLNPIKVEVTA
hide sequence
RefSeq Acc Id:
ENSRNOP00000040882 ⟸ ENSRNOT00000042494
RefSeq Acc Id:
ENSRNOP00000050128 ⟸ ENSRNOT00000051741
Promoters
RGD ID: 13691227
Promoter ID: EPDNEW_R1750
Type: single initiation site
Name: LOC361914_1
Description: similar to solute carrier family 7 (cationic amino acid transporter,y+ system), member 12
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 2 88,553,100 - 88,553,160 EPDNEW
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2006-02-09
LOC361914
similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
Symbol and Name status set to provisional
70820
PROVISIONAL