RGD1565355 (similar to fatty acid translocase/CD36) - Rat Genome Database

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Gene: RGD1565355 (similar to fatty acid translocase/CD36) Rattus norvegicus
Analyze
No known orthologs.
Symbol: RGD1565355
Name: similar to fatty acid translocase/CD36
RGD ID: 1565355
Description: Predicted to enable several functions, including amyloid-beta binding activity; fatty acid transmembrane transporter activity; and lipoprotein particle binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis. Predicted to be located in several cellular components, including apical plasma membrane; brush border membrane; and external side of plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Human ortholog(s) of this gene implicated in several diseases, including blood platelet disease (multiple); hemolytic-uremic syndrome; osteoarthritis; pulmonary tuberculosis; and type 2 diabetes mellitus. Orthologous to human CD36 (CD36 molecule); PARTICIPATES IN cell-extracellular matrix signaling pathway; eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; malaria pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cd36 antigen-like; cell surface protein CD36; FAT; fatty acid translocase/CD36; fatty acid transporter; LOC100910000; LOC103690020; LOC499985; platelet glycoprotein 4-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2417,424,749 - 17,465,808 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl417,354,466 - 17,513,903 (+)Ensembl
Rnor_6.0414,071,705 - 14,112,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl414,001,761 - 14,249,749 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0414,181,115 - 14,221,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4413,576,484 - 13,604,065 (+)NCBIRGSC3.4rn4RGSC3.4
Celera412,963,120 - 12,990,602 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid fibril formation  (IEA)
amyloid-beta clearance by cellular catabolic process  (IBA,IEA)
apoptotic cell clearance  (IEA)
cell adhesion  (IEA)
cell surface receptor signaling pathway  (IEA)
cellular response to amyloid-beta  (IEA)
cellular response to diacyl bacterial lipopeptide  (IEA)
cellular response to hydroperoxide  (IEA)
cellular response to lipopolysaccharide  (IEA)
cellular response to lipoteichoic acid  (IEA)
cellular response to oxidised low-density lipoprotein particle stimulus  (IEA)
cGMP-mediated signaling  (IEA)
cholesterol import  (IEA)
defense response to Gram-positive bacterium  (IEA)
energy homeostasis  (IEA)
immune response  (IEA)
intestinal cholesterol absorption  (IEA)
lipid storage  (IBA,IEA)
lipid transport across blood-brain barrier  (IEA)
lipoprotein transport  (IBA,IEA)
long-chain fatty acid import across plasma membrane  (IEA)
long-chain fatty acid import into cell  (IBA)
low-density lipoprotein particle clearance  (IBA,IEA)
low-density lipoprotein particle mediated signaling  (IEA)
MAPK cascade  (IEA)
negative regulation of gene expression  (IEA)
negative regulation of protein import into nucleus  (IEA)
negative regulation of transcription by RNA polymerase II  (IEA)
nitric oxide mediated signal transduction  (IEA)
oxidised low-density lipoprotein particle clearance  (IEA)
phagocytosis, recognition  (IEA)
positive regulation of blood coagulation  (IEA)
positive regulation of blood microparticle formation  (IEA)
positive regulation of cell death  (IEA)
positive regulation of cell-matrix adhesion  (IEA)
positive regulation of cholesterol storage  (IEA)
positive regulation of cold-induced thermogenesis  (ISS)
positive regulation of cytosolic calcium ion concentration  (IEA)
positive regulation of ERK1 and ERK2 cascade  (IEA)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (IEA)
positive regulation of interleukin-1 beta production  (IEA)
positive regulation of interleukin-12 production  (IEA)
positive regulation of interleukin-6 production  (IEA)
positive regulation of macrophage cytokine production  (IEA)
positive regulation of macrophage derived foam cell differentiation  (IEA)
positive regulation of NF-kappaB transcription factor activity  (IEA)
positive regulation of nitric oxide biosynthetic process  (IEA)
positive regulation of NLRP3 inflammasome complex assembly  (IEA)
positive regulation of peptidyl-tyrosine phosphorylation  (IEA)
positive regulation of phagocytosis, engulfment  (IEA)
positive regulation of reactive oxygen species biosynthetic process  (IEA)
positive regulation of tumor necrosis factor production  (IEA)
receptor internalization  (IEA)
receptor-mediated endocytosis  (IBA)
regulation of action potential  (IEA)
regulation of removal of superoxide radicals  (IEA)
regulation of toll-like receptor signaling pathway  (IEA)
response to linoleic acid  (IEA)
response to stilbenoid  (IEA)
sensory perception of taste  (IEA)
short-chain fatty acid transport  (IEA)
triglyceride transport  (IEA)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. CD36 is indispensable for thermogenesis under conditions of fasting and cold stress. Putri M, etal., Biochem Biophys Res Commun. 2015 Feb 20;457(4):520-5. doi: 10.1016/j.bbrc.2014.12.124. Epub 2015 Jan 13.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7688729   PMID:9315741   PMID:10409247   PMID:12477932  


Genomics

Position Markers
RH132455  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:67
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000067543
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 31 25 14 15 14 8 9 2 10 8
Low 3 12 31 26 4 26 2 9 35 38 1
Below cutoff 1 1 1 61 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000008319   ⟹   ENSRNOP00000008319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,132 - 17,462,526 (+)Ensembl
Rnor_6.0 Ensembl414,151,414 - 14,188,215 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000061687   ⟹   ENSRNOP00000058398
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,487,573 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,151,343 - 14,191,498 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066224   ⟹   ENSRNOP00000061162
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,071,507 - 14,249,749 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000067543   ⟹   ENSRNOP00000063867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,156 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,213,587 - 14,237,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075878   ⟹   ENSRNOP00000068345
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,039,977 - 14,241,272 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075962   ⟹   ENSRNOP00000068147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,406,805 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,001,866 - 14,071,161 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076519   ⟹   ENSRNOP00000067925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,001,761 - 14,167,505 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076573   ⟹   ENSRNOP00000067980
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,513,903 (+)Ensembl
Rnor_6.0 Ensembl414,151,374 - 14,246,665 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076946   ⟹   ENSRNOP00000068300
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,466 - 17,406,801 (+)Ensembl
Rnor_6.0 Ensembl414,212,925 - 14,241,272 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077219   ⟹   ENSRNOP00000074542
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,432,132 - 17,462,882 (+)Ensembl
Rnor_6.0 Ensembl414,151,374 - 14,246,665 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077505   ⟹   ENSRNOP00000070601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl414,070,553 - 14,249,718 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091249   ⟹   ENSRNOP00000069273
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl417,354,525 - 17,410,081 (+)Ensembl
Rnor_6.0 Ensembl414,039,977 - 14,241,269 (+)Ensembl
RefSeq Acc Id: NM_001109218   ⟹   NP_001102688
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2417,432,132 - 17,464,888 (+)NCBI
Rnor_6.0414,071,705 - 14,112,330 (+)NCBI
Rnor_5.0414,181,115 - 14,221,373 (+)NCBI
RGSC_v3.4413,576,484 - 13,604,065 (+)RGD
Celera412,963,120 - 12,990,602 (+)RGD
Sequence:
RefSeq Acc Id: XM_039108092   ⟹   XP_038964020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2417,424,749 - 17,465,808 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102688   ⟸   NM_001109218
- UniProtKB: Q5BKE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074542   ⟸   ENSRNOT00000077219
RefSeq Acc Id: ENSRNOP00000008319   ⟸   ENSRNOT00000008319
RefSeq Acc Id: ENSRNOP00000068345   ⟸   ENSRNOT00000075878
RefSeq Acc Id: ENSRNOP00000058398   ⟸   ENSRNOT00000061687
RefSeq Acc Id: ENSRNOP00000070601   ⟸   ENSRNOT00000077505
RefSeq Acc Id: ENSRNOP00000061162   ⟸   ENSRNOT00000066224
RefSeq Acc Id: ENSRNOP00000069273   ⟸   ENSRNOT00000091249
RefSeq Acc Id: ENSRNOP00000067980   ⟸   ENSRNOT00000076573
RefSeq Acc Id: ENSRNOP00000067925   ⟸   ENSRNOT00000076519
RefSeq Acc Id: XP_038964020   ⟸   XM_039108092
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000063867   ⟸   ENSRNOT00000067543
RefSeq Acc Id: ENSRNOP00000068300   ⟸   ENSRNOT00000076946
RefSeq Acc Id: ENSRNOP00000068147   ⟸   ENSRNOT00000075962

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7F5B5-F1-model_v2 AlphaFold F7F5B5 1-472 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565355 AgrOrtholog
BioCyc Gene G2FUF-45915 BioCyc
Ensembl Genes ENSRNOG00000005906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000040108 Ensembl
Ensembl Protein ENSRNOP00000063867.3 UniProtKB/TrEMBL
  ENSRNOP00000067980.2 UniProtKB/TrEMBL
  ENSRNOP00000068300.2 UniProtKB/TrEMBL
  ENSRNOP00000074542 ENTREZGENE
  ENSRNOP00000074542.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067543.4 UniProtKB/TrEMBL
  ENSRNOT00000076573.3 UniProtKB/TrEMBL
  ENSRNOT00000076946.3 UniProtKB/TrEMBL
  ENSRNOT00000077219 ENTREZGENE
  ENSRNOT00000077219.2 UniProtKB/TrEMBL
InterPro CD36 UniProtKB/TrEMBL
  CD36_antigen UniProtKB/TrEMBL
  CD36_chordates UniProtKB/TrEMBL
KEGG Report rno:499985 UniProtKB/TrEMBL
NCBI Gene 499985 ENTREZGENE
PANTHER CD36 UniProtKB/TrEMBL
  PTHR11923:SF12 UniProtKB/TrEMBL
Pfam CD36 UniProtKB/TrEMBL
PhenoGen RGD1565355 PhenoGen
PRINTS CD36ANTIGEN UniProtKB/TrEMBL
  CD36FAMILY UniProtKB/TrEMBL
UniProt A0A096MJ39_RAT UniProtKB/TrEMBL
  A0A096MJX7_RAT UniProtKB/TrEMBL
  A0A0G2K8B4_RAT UniProtKB/TrEMBL
  F7F5B5_RAT UniProtKB/TrEMBL
  Q5BKE5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 RGD1565355  similar to fatty acid translocase/CD36  LOC103690020  platelet glycoprotein 4-like  Data Merged 737654 PROVISIONAL
2015-07-29 RGD1565355  similar to fatty acid translocase/CD36  LOC100910000  platelet glycoprotein 4-like  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103690020  platelet glycoprotein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100910000  platelet glycoprotein 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1565355  similar to fatty acid translocase/CD36   RGD1565355_predicted  similar to fatty acid translocase/CD36 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565355_predicted  similar to fatty acid translocase/CD36 (predicted)  LOC499985  similar to fatty acid translocase/CD36  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499985  similar to fatty acid translocase/CD36      Symbol and Name status set to provisional 70820 PROVISIONAL