Slc35b2 (solute carrier family 35 member B2)

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Gene: Slc35b2 (solute carrier family 35 member B2) Rattus norvegicus

Analyze

Symbol:

Slc35b2

Name:

solute carrier family 35 member B2

RGD ID:

1565318

Description:

Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate transport and positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within 3'-phospho-5'-adenylyl sulfate transmembrane transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human SLC35B2 (solute carrier family 35 member B2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

adenosine 3'-phospho 5'-phosphosulfate transporter 1; D-serine modulator-1; Dsm-1; hypothetical protein LOC501103; MGC124695; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2; solute carrier family 35, member B2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35B2 (solute carrier family 35 member B2)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc35b2 (solute carrier family 35, member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35b2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35B2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35B2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35b2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35B2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35B2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35b2 (solute carrier family 35 member B2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC35B2 (solute carrier family 35 member B2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc35b2 (solute carrier family 35, member B2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35b2 (solute carrier family 35 member B2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HUT1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sll	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pst-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	15,438,594 - 15,442,227 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,438,594 - 15,442,234 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,025,121 - 24,028,754 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,087,798 - 29,091,431 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	27,388,560 - 27,392,193 (-)	NCBI	Rnor_WKY
Rnor_6.0	9	17,823,399 - 17,827,032 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,823,400 - 17,827,032 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,712,120 - 16,715,753 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,039,104 - 11,042,739 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	13,181,833 - 13,185,465 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

spondyloepimetaphyseal dysplasia with joint laxity (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

clofibrate (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

ivermectin (ISO)

methamphetamine (EXP)

methidathion (ISO)

N-nitrosodiethylamine (EXP)

oxycodone (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctanoic acid (ISO)

potassium chromate (ISO)

SCH 23390 (EXP)

sodium arsenate (ISO)

Soman (EXP)

streptozocin (EXP)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-phospho-5'-adenylyl sulfate transmembrane transport (ISO)

3'-phosphoadenosine 5'-phosphosulfate transport (ISO)

positive regulation of I-kappaB kinase/NF-kappaB signaling (ISO)

Cellular Component

Golgi apparatus (ISO)

Golgi membrane (ISO)

membrane (ISO)

Molecular Function

3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12716889	PMID:12761501

Genomics

Comparative Map Data

Slc35b2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	15,438,594 - 15,442,227 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	15,438,594 - 15,442,234 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	24,025,121 - 24,028,754 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	29,087,798 - 29,091,431 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	27,388,560 - 27,392,193 (-)	NCBI	Rnor_WKY
Rnor_6.0	9	17,823,399 - 17,827,032 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,823,400 - 17,827,032 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,712,120 - 16,715,753 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	11,039,104 - 11,042,739 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	13,181,833 - 13,185,465 (-)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

SLC35B2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,254,101 - 44,257,890 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	44,254,096 - 44,257,890 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	44,221,838 - 44,225,627 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,329,821 - 44,333,250 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	44,329,821 - 44,333,250	NCBI
Celera	6	45,774,983 - 45,778,432 (-)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,943,853 - 43,947,298 (-)	NCBI		HuRef
CHM1_1	6	44,225,543 - 44,228,990 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	44,088,249 - 44,092,041 (-)	NCBI		T2T-CHM13v2.0

Slc35b2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	45,874,844 - 45,878,597 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	45,874,800 - 45,878,597 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	45,563,913 - 45,567,671 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	45,563,874 - 45,567,671 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	45,701,101 - 45,704,618 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,701,101 - 45,704,618 (+)	NCBI		MGSCv36	mm8
Celera	17	48,996,803 - 49,000,319 (+)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI

Slc35b2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,878,592 - 9,882,431 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,878,592 - 9,882,431 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC35B2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	45,133,189 - 45,136,629 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	45,133,186 - 45,136,629 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	43,849,849 - 43,853,328 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC35B2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,665,810 - 12,667,966 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,664,871 - 12,668,484 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,690,550 - 12,693,313 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	13,147,596 - 13,150,972 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	13,147,598 - 13,151,054 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,673,652 - 12,676,402 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,761,128 - 12,763,878 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,855,330 - 12,858,086 (-)	NCBI		UU_Cfam_GSD_1.0

Slc35b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	48,129,881 - 48,133,357 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	15,826,822 - 15,834,729 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936476	15,826,882 - 15,830,321 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35B2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	39,247,915 - 39,254,466 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	39,250,243 - 39,254,499 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	45,120,502 - 45,123,937 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35B2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	27,910,593 - 27,914,042 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	27,911,294 - 27,913,443 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	44,308,182 - 44,311,631 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35b2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	15,606,455 - 15,609,896 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	15,606,596 - 15,609,718 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc35b2
7 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	331
Count of miRNA genes:	202
Interacting mature miRNAs:	232
Transcripts:	ENSRNOT00000026929
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat

Markers in Region

RH127542

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	15,438,717 - 15,438,913 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,823,523 - 17,823,718	NCBI	Rnor6.0
Rnor_5.0	9	16,712,244 - 16,712,439	UniSTS	Rnor5.0
RGSC_v3.4	9	11,039,228 - 11,039,424	UniSTS	RGSC3.4
Celera	9	13,181,957 - 13,182,152	UniSTS
RH 3.4 Map	9	78.5	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH129394

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	15,438,604 - 15,438,786 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,823,410 - 17,823,591	NCBI	Rnor6.0
Rnor_5.0	9	16,712,131 - 16,712,312	UniSTS	Rnor5.0
RGSC_v3.4	9	11,039,115 - 11,039,296	UniSTS	RGSC3.4
Celera	9	13,181,844 - 13,182,025	UniSTS
RH 3.4 Map	2	1089.99	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH131878

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	15,442,877 - 15,443,078 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	17,827,683 - 17,827,883	NCBI	Rnor6.0
Rnor_5.0	9	16,716,404 - 16,716,604	UniSTS	Rnor5.0
RGSC_v3.4	9	11,043,390 - 11,043,590	UniSTS	RGSC3.4
Celera	9	13,186,116 - 13,186,316	UniSTS
RH 3.4 Map	9	78.5	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	39	33	14	33		3	66	29	35	11
Low		8	18	8	5	8	8	8	8	6	6		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB197928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC096454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026929 ⟹ ENSRNOP00000026929

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	15,438,594 - 15,442,234 (-)	Ensembl
Rnor_6.0 Ensembl	9	17,823,400 - 17,827,032 (-)	Ensembl

RefSeq Acc Id:

NM_001037215 ⟹ NP_001032292

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	15,438,594 - 15,442,227 (-)	NCBI
Rnor_6.0	9	17,823,399 - 17,827,032 (-)	NCBI
Rnor_5.0	9	16,712,120 - 16,715,753 (-)	NCBI
RGSC_v3.4	9	11,039,104 - 11,042,739 (-)	RGD
Celera	9	13,181,833 - 13,185,465 (-)	RGD

Sequence:

show sequence

GGCTGACTGGCTGGCTGCTAGAGCAAGCGGCAGAGGGAGCGGAGGGAGAGCACGGCCCGGGGAC
TCGCATTCCCCGGTCCCCCCTCCGCCCCACGCGGCTGGGCCATGGACGCCAGATGGTGGGCAGT
AGTGGTACTCGCCACGCTCCCTTCCTTGGGAGCAGGTGGAGAGTCACCCGAAGCCCCTCCGCAG
TCCTGGACACAGCTGTGGCTCTTCCGCTTTTTGTTGAATGTAGCTGGCTATGCCAGCTTTATGG
TACCTGGCTACCTCCTGGTGCAGTACTTAAGACGGAAGAACTACCTGGAGACAGGCAGGGGTCT
CTGCTTCCCCCTGGTGAAAGCCTGTGTATTTGGCAATGAGCCCAAGGCCCCTGATGAGGTTCCC
CTAGCTCCCCGGACAGAGACAGCAGAATCCACCCCCTCTTGGCAGGTCCTGAAGCTGGTCTTCT
GTGCCGCGGGACTCCAGGTGTCCTATCTGACTTGGGGTGTACTGCAGGAAAGAGTGATGACCGG
CAGCTATGGGGCCACAGCCACATCACCAGGGGAGCATTTCACAGACTCACAATTCCTGGTGCTA
ATGAACCGCGTGCTGGCACTGGTTGTGGCAGGCCTCTACTGTATCCTACGCAAGCAGCCCCGTC
ATGGTGCACCCATGTACCGGTACTCCTTTGCCAGTCTGTCAAATGTGCTTAGCAGCTGGTGCCA
GTATGAAGCACTTAAGTTCGTCAGCTTCCCTACCCAGGTGCTGGCGAAGGCCTCCAAGGTGATT
CCTGTCATGATGATGGGAAAGCTGGTGTCTCGGCGCAGCTATGAACACTGGGAGTACCTGACTG
CGGGCCTCATCTCCATTGGAGTTAGCATGTTTCTTCTGTCGAGTGGACCAGAGCCCCGGAGCTC
TCCAGCCACCACACTCTCTGGCTTGGTCCTACTGGCAGGCTATATTGCATTTGACAGCTTCACC
TCAAACTGGCAGGATGCCCTGTTTGCCTATAAGATGTCGTCGGTGCAGATGATGTTTGGGGTCA
ATTTATTCTCCTGTCTTTTCACAGTAGGCTCACTACTGGAACAGGGGGCTCTCCTAGAGGGGGC
CCGCTTCATGGGGCGACACAGTGAATTTGCACTCCATGCCCTCCTCCTCTCCGTCTGCTCTGCC
TTCGGTCAGCTCTTCATCTTCTACACCATCGGACAGTTTGGGGCCGCCGTCTTCACTATCATCA
TGACTCTGCGGCAGGCTATCGCCATCCTTCTCTCCTGCCTCCTCTATGGCCACACTGTCACTGT
GGTGGGGGGACTGGGAGTAGCTGTGGTCTTTACTGCCCTCCTCCTCAGAGTCTATGCCCGGGGC
CGGAAGCAGCGGGGAAAGAAGGCAGTGCCCACTGAGCCTGCAGTGCAGAAGGTGTGAATGAGGA
CCTCCATTGCTCTCATCTGCTGAGGCACTGGCTCAAGGGCAAATTATTTCTCAGTGTCTCAGCA
CACAGCAGAGGGTTGGAGTCCTGGAGGCAGCCTCTTTGCCTTGCCTTAAGAGCCCCACTTCACC
AAGTGACAGCTGTGGGTAATGCAGCGTTCCTCCCCGCTACCTGAGATCTTGACTTAGCTGGTGG
CCAGGCAAACCAGCAGCAGGCTCATCCCCTTCTAACACCCACCCCTTGAGGCTGCCAGGCACCA
GCTGGGAAGTAAATTGTTTACAGGCCATGCAGTTACCCCTAGGGGCTAGTGAGAATGGTGCTGT
GCCAGAAGGGACAAAGGACTCCCCCCAGCCCAGTTGGGGCCCCCAGTGTTCCTTGAGCAAGTTT
TGGTTACTTGGAAATGTCACCTTTTGCTCTATTTGATTAAACTGCAGCAGTGATTTTTGGAAAA
AAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032292	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00648	(Get FASTA)	NCBI Sequence Viewer
	BAE72884	(Get FASTA)	NCBI Sequence Viewer
	EDM18738	(Get FASTA)	NCBI Sequence Viewer
	EDM18739	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001032292 ⟸ NM_001037215
- Peptide Label:	precursor
- UniProtKB:	Q497A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDARWWAVVVLATLPSLGAGGESPEAPPQSWTQLWLFRFLLNVAGYASFMVPGYLLVQYLRRKN YLETGRGLCFPLVKACVFGNEPKAPDEVPLAPRTETAESTPSWQVLKLVFCAAGLQVSYLTWGV LQERVMTGSYGATATSPGEHFTDSQFLVLMNRVLALVVAGLYCILRKQPRHGAPMYRYSFASLS NVLSSWCQYEALKFVSFPTQVLAKASKVIPVMMMGKLVSRRSYEHWEYLTAGLISIGVSMFLLS SGPEPRSSPATTLSGLVLLAGYIAFDSFTSNWQDALFAYKMSSVQMMFGVNLFSCLFTVGSLLE QGALLEGARFMGRHSEFALHALLLSVCSAFGQLFIFYTIGQFGAAVFTIIMTLRQAIAILLSCL LYGHTVTVVGGLGVAVVFTALLLRVYARGRKQRGKKAVPTEPAVQKV hide sequence

RefSeq Acc Id:

ENSRNOP00000026929 ⟸ ENSRNOT00000026929

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q497A2-F1-model_v2	AlphaFold	Q497A2	1-431	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696543

Promoter ID:

EPDNEW_R7066

Type:

initiation region

Name:

Slc35b2_1

Description:

solute carrier family 35 member B2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	17,827,048 - 17,827,108	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565318	AgrOrtholog
BioCyc Gene	G2FUF-28174	BioCyc
Ensembl Genes	ENSRNOG00000019900	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026929	ENTREZGENE
	ENSRNOP00000026929.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026929	ENTREZGENE
	ENSRNOT00000026929.7	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7932661	IMAGE-MGC_LOAD
InterPro	UAA	UniProtKB/TrEMBL
KEGG Report	rno:501103	UniProtKB/TrEMBL
MGC_CLONE	MGC:124695	IMAGE-MGC_LOAD
NCBI Gene	501103	ENTREZGENE
PANTHER	ADENOSINE 3'-PHOSPHO 5'-PHOSPHOSULFATE TRANSPORTER 1	UniProtKB/TrEMBL
	PTHR10778	UniProtKB/TrEMBL
Pfam	UAA	UniProtKB/TrEMBL
PhenoGen	Slc35b2	PhenoGen
UniProt	F7FLA1_RAT	UniProtKB/TrEMBL
	Q497A2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc35b2	solute carrier family 35 member B2	Slc35b2	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc35b2	solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2	Slc35b2	solute carrier family 35, member B2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-20	Slc35b2	solute carrier family 35, member B2	Dsm-1	D-serine modulator-1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Dsm-1	D-serine modulator-1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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