Stard13 (StAR-related lipid transfer domain containing 13) - Rat Genome Database

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Gene: Stard13 (StAR-related lipid transfer domain containing 13) Rattus norvegicus
Analyze
Symbol: Stard13
Name: StAR-related lipid transfer domain containing 13
RGD ID: 1564816
Description: Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within several processes, including endothelial tube lumen extension; negative regulation of cell migration involved in sprouting angiogenesis; and negative regulation of sprouting angiogenesis. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498130; RGD1564816; similar to Serologically defined colon cancer antigen 13; StAR-related lipid transfer (START) domain containing 13; stAR-related lipid transfer protein 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.212566,282 - 959,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12566,310 - 959,421 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,140,224 - 1,310,853 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,662,449 - 1,833,090 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012563,162 - 731,010 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0121,023,494 - 1,418,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,007,710 - 1,397,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,502,402 - 3,696,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera122,270,772 - 2,437,811 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodimethylamine  (EXP)
nitrofen  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phosgene  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20208559   PMID:24023717  


Genomics

Comparative Map Data
Stard13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.212566,282 - 959,372 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12566,310 - 959,421 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,140,224 - 1,310,853 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,662,449 - 1,833,090 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012563,162 - 731,010 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0121,023,494 - 1,418,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,007,710 - 1,397,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,502,402 - 3,696,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera122,270,772 - 2,437,811 (-)NCBICelera
Cytogenetic Map12p12NCBI
STARD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381333,103,137 - 33,676,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1333,103,137 - 33,350,630 (-)EnsemblGRCh38hg38GRCh38
GRCh371333,677,274 - 34,250,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361332,575,307 - 32,757,892 (-)NCBINCBI36Build 36hg18NCBI36
Build 341332,610,565 - 32,757,878NCBI
Celera1314,744,113 - 14,926,471 (-)NCBICelera
Cytogenetic Map13q13.1-q13.2NCBI
HuRef1314,489,080 - 15,062,575 (-)NCBIHuRef
CHM1_11333,644,794 - 34,218,882 (-)NCBICHM1_1
T2T-CHM13v2.01332,320,452 - 32,894,146 (-)NCBIT2T-CHM13v2.0
Stard13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395150,960,975 - 151,351,780 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5150,960,975 - 151,157,301 (-)EnsemblGRCm39 Ensembl
GRCm385151,037,515 - 151,428,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5151,037,510 - 151,233,836 (-)EnsemblGRCm38mm10GRCm38
MGSCv375151,840,090 - 151,992,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365151,306,009 - 151,458,573 (-)NCBIMGSCv36mm8
Celera5149,041,974 - 149,194,711 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.82NCBI
Stard13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543112,557,146 - 12,734,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543112,221,980 - 12,732,894 (+)NCBIChiLan1.0ChiLan1.0
STARD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11323,772,697 - 24,021,133 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01314,359,252 - 14,607,742 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11332,789,583 - 33,038,861 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1332,789,587 - 33,038,606 (-)Ensemblpanpan1.1panPan2
STARD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,605,057 - 7,117,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,872,773 - 7,115,466 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,641,722 - 7,153,942 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0256,714,448 - 7,227,518 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,984,416 - 7,226,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,613,183 - 7,125,461 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,605,166 - 7,117,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0256,803,969 - 7,181,538 (+)NCBIUU_Cfam_GSD_1.0
Stard13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945167,793,840 - 168,268,130 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647227,683,923 - 27,741,339 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647227,683,939 - 28,158,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1119,518,135 - 9,738,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2119,429,631 - 9,618,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1311,837,218 - 12,388,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl311,836,977 - 11,974,362 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605731,963,206 - 32,512,077 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247764,371,126 - 4,540,711 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247763,998,594 - 4,539,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stard13
1924 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:221
Interacting mature miRNAs:280
Transcripts:ENSRNOT00000001446
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat

Markers in Region
RH138797  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212675,259 - 675,407 (+)MAPPERmRatBN7.2
Rnor_6.0121,135,853 - 1,136,000NCBIRnor6.0
Rnor_5.0121,116,385 - 1,116,532UniSTSRnor5.0
RGSC_v3.4123,562,251 - 3,562,398UniSTSRGSC3.4
Celera122,379,271 - 2,379,418UniSTS
Cytogenetic Map12p12UniSTS
RH140748  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212566,459 - 566,622 (+)MAPPERmRatBN7.2
Rnor_6.0121,023,671 - 1,023,833NCBIRnor6.0
Rnor_5.0121,007,887 - 1,008,049UniSTSRnor5.0
RGSC_v3.4123,695,922 - 3,696,084UniSTSRGSC3.4
Celera122,270,832 - 2,270,994UniSTS
Cytogenetic Map12p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 24 24 24 1 1 6 18 16 11 1
Low 3 29 33 17 19 17 7 10 68 17 25 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF112845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF112846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001446   ⟹   ENSRNOP00000001446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl12566,310 - 734,581 (-)Ensembl
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094162   ⟹   ENSRNOP00000091608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl12566,310 - 777,279 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118613   ⟹   ENSRNOP00000091607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl12566,310 - 959,421 (-)Ensembl
RefSeq Acc Id: NM_001109060   ⟹   NP_001102530
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,400 - 734,604 (-)NCBI
Rnor_6.0121,023,611 - 1,195,579 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
RGSC_v3.4123,502,402 - 3,696,144 (+)RGD
Celera122,270,772 - 2,437,811 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248743   ⟹   XP_006248805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 735,808 (-)NCBI
Rnor_6.0121,023,494 - 1,196,764 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248749   ⟹   XP_006248811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 652,018 (-)NCBI
Rnor_6.0121,023,494 - 1,106,415 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768989   ⟹   XP_008767211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 611,421 (-)NCBI
Rnor_6.0121,023,494 - 1,068,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768991   ⟹   XP_008767213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 604,977 (-)NCBI
Rnor_6.0121,023,494 - 1,051,993 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598423   ⟹   XP_017453912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,283 - 890,726 (-)NCBI
Rnor_6.0121,023,494 - 1,350,305 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598424   ⟹   XP_017453913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 959,372 (-)NCBI
Rnor_6.0121,023,494 - 1,418,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598426   ⟹   XP_017453915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 959,356 (-)NCBI
Rnor_6.0121,023,494 - 1,418,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598427   ⟹   XP_017453916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,283 - 890,992 (-)NCBI
Rnor_6.0121,023,494 - 1,355,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598428   ⟹   XP_017453917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 778,801 (-)NCBI
Rnor_6.0121,023,494 - 1,237,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598429   ⟹   XP_017453918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 778,800 (-)NCBI
Rnor_6.0121,023,494 - 1,237,925 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089671   ⟹   XP_038945599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212568,624 - 735,812 (-)NCBI
RefSeq Acc Id: XM_039089672   ⟹   XP_038945600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 670,278 (-)NCBI
RefSeq Acc Id: XM_039089673   ⟹   XP_038945601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212566,282 - 670,278 (-)NCBI
RefSeq Acc Id: XM_039089674   ⟹   XP_038945602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212581,452 - 735,824 (-)NCBI
RefSeq Acc Id: NP_001102530   ⟸   NM_001109060
- UniProtKB: T2CBG9 (UniProtKB/TrEMBL),   A6KSV7 (UniProtKB/TrEMBL),   T2C9V6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248805   ⟸   XM_006248743
- Peptide Label: isoform X1
- UniProtKB: D3ZU63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248811   ⟸   XM_006248749
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008767211   ⟸   XM_008768989
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008767213   ⟸   XM_008768991
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017453913   ⟸   XM_017598424
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453915   ⟸   XM_017598426
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453916   ⟸   XM_017598427
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453912   ⟸   XM_017598423
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453917   ⟸   XM_017598428
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453918   ⟸   XM_017598429
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000001446   ⟸   ENSRNOT00000001446
RefSeq Acc Id: XP_038945601   ⟸   XM_039089673
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038945600   ⟸   XM_039089672
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038945599   ⟸   XM_039089671
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038945602   ⟸   XM_039089674
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000091608   ⟸   ENSRNOT00000094162
RefSeq Acc Id: ENSRNOP00000091607   ⟸   ENSRNOT00000118613
Protein Domains
Rho-GAP   START

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZU63-F1-model_v2 AlphaFold D3ZU63 1-1112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698361
Promoter ID:EPDNEW_R8886
Type:initiation region
Name:Stard13_1
Description:StAR-related lipid transfer domain containing 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,195,556 - 1,195,616EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564816 AgrOrtholog
BioCyc Gene G2FUF-20504 BioCyc
Ensembl Genes ENSRNOG00000001090 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001446 ENTREZGENE
  ENSRNOT00000001446.6 UniProtKB/TrEMBL
  ENSRNOT00000094162 ENTREZGENE
  ENSRNOT00000094162.1 UniProtKB/TrEMBL
  ENSRNOT00000118613 ENTREZGENE
  ENSRNOT00000118613.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.2070 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
  6.10.250.1870 UniProtKB/TrEMBL
InterPro Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  START-like_dom UniProtKB/TrEMBL
  START_lipid-bd UniProtKB/TrEMBL
KEGG Report rno:498130 UniProtKB/TrEMBL
NCBI Gene 498130 ENTREZGENE
PANTHER RHO-TYPE GTPASE ACTIVATING PROTEIN UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 13 UniProtKB/TrEMBL
Pfam RhoGAP UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PhenoGen Stard13 PhenoGen
PROSITE RHOGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001090 RatGTEx
SMART RhoGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  SSF47769 UniProtKB/TrEMBL
UniProt A0A8I6AFY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGG1 ENTREZGENE, UniProtKB/TrEMBL
  A6KSV7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU63 ENTREZGENE, UniProtKB/TrEMBL
  T2C9V6 ENTREZGENE, UniProtKB/TrEMBL
  T2CBG9 ENTREZGENE
UniProt Secondary T2CBG9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Stard13  StAR-related lipid transfer domain containing 13  Stard13  StAR-related lipid transfer (START) domain containing 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Stard13  StAR-related lipid transfer (START) domain containing 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Stard13  StAR-related lipid transfer (START) domain containing 13  RGD1564816_predicted  similar to Serologically defined colon cancer antigen 13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564816_predicted  similar to Serologically defined colon cancer antigen 13 (predicted)  LOC498130  similar to Serologically defined colon cancer antigen 13  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498130  similar to Serologically defined colon cancer antigen 13      Symbol and Name status set to provisional 70820 PROVISIONAL