Stard13 (StAR-related lipid transfer domain containing 13) - Rat Genome Database
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Gene: Stard13 (StAR-related lipid transfer domain containing 13) Rattus norvegicus
Analyze
Symbol: Stard13
Name: StAR-related lipid transfer domain containing 13
RGD ID: 1564816
Description: Predicted to have GTPase activator activity. Predicted to be involved in several processes, including endothelial tube lumen extension; negative regulation of cell migration involved in sprouting angiogenesis; and regulation of Rho protein signal transduction. Predicted to localize to cytoplasm. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13); INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC498130; RGD1564816; similar to Serologically defined colon cancer antigen 13; StAR-related lipid transfer (START) domain containing 13; stAR-related lipid transfer protein 13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0121,023,494 - 1,418,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,007,710 - 1,397,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,502,402 - 3,696,144 (+)NCBIRGSC3.4rn4RGSC3.4
Celera122,270,772 - 2,437,811 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
genistein  (EXP)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodimethylamine  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phosgene  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

Additional References at PubMed
PMID:20208559   PMID:24023717  


Genomics

Comparative Map Data
Stard13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0121,023,494 - 1,418,919 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,007,710 - 1,397,907 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,502,402 - 3,696,144 (+)NCBIRGSC3.4rn4RGSC3.4
Celera122,270,772 - 2,437,811 (-)NCBICelera
Cytogenetic Map12p12NCBI
STARD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1333,103,137 - 33,350,630 (-)EnsemblGRCh38hg38GRCh38
GRCh381333,103,137 - 33,676,829 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371333,677,272 - 34,250,932 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361332,575,307 - 32,757,892 (-)NCBINCBI36hg18NCBI36
Build 341332,610,565 - 32,757,878NCBI
Celera1314,744,113 - 14,926,471 (-)NCBI
Cytogenetic Map13q13.1-q13.2NCBI
HuRef1314,489,080 - 15,062,575 (-)NCBIHuRef
CHM1_11333,644,794 - 34,218,922 (-)NCBICHM1_1
Stard13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395150,960,975 - 151,351,780 (-)NCBIGRCm39mm39
GRCm385151,037,515 - 151,428,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5151,037,510 - 151,233,836 (-)EnsemblGRCm38mm10GRCm38
MGSCv375151,840,090 - 151,992,768 (-)NCBIGRCm37mm9NCBIm37
MGSCv365151,306,009 - 151,458,573 (-)NCBImm8
Celera5149,041,974 - 149,194,711 (-)NCBICelera
Cytogenetic Map5G3NCBI
Stard13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543112,557,146 - 12,734,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543112,221,980 - 12,732,894 (+)NCBIChiLan1.0ChiLan1.0
STARD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11332,789,583 - 33,038,861 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1332,789,587 - 33,038,606 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01314,359,252 - 14,607,742 (-)NCBIMhudiblu_PPA_v0panPan3
STARD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl256,872,773 - 7,115,466 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1256,605,057 - 7,117,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Stard13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647227,683,939 - 28,158,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1119,518,135 - 9,738,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2119,429,631 - 9,618,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl311,836,977 - 11,974,362 (-)Ensembl
ChlSab1.1311,837,218 - 12,388,706 (-)NCBI
Stard13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247763,998,594 - 4,539,815 (+)NCBI

Position Markers
RH138797  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0121,135,853 - 1,136,000NCBIRnor6.0
Rnor_5.0121,116,385 - 1,116,532UniSTSRnor5.0
RGSC_v3.4123,562,251 - 3,562,398UniSTSRGSC3.4
Celera122,379,271 - 2,379,418UniSTS
Cytogenetic Map12p12UniSTS
RH140748  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0121,023,671 - 1,023,833NCBIRnor6.0
Rnor_5.0121,007,887 - 1,008,049UniSTSRnor5.0
RGSC_v3.4123,695,922 - 3,696,084UniSTSRGSC3.4
Celera122,270,832 - 2,270,994UniSTS
Cytogenetic Map12p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12111765163Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12122650917Rat
10450854Stl34Serum triglyceride level QTL 343.50.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)12122853017Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12123035872Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123758197Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12130749723Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12136919844Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12138334225Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)1215081045150810Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1215081045150810Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)1249257845492578Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12125813910257059Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:221
Interacting mature miRNAs:280
Transcripts:ENSRNOT00000001446
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 24 24 24 1 1 6 18 16 11 1
Low 3 29 33 17 19 17 7 10 68 17 25 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07034932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07034939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01070667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF112845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF112846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001446   ⟹   ENSRNOP00000001446
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl121,023,531 - 1,195,591 (-)Ensembl
RefSeq Acc Id: NM_001109060   ⟹   NP_001102530
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,611 - 1,195,579 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
RGSC_v3.4123,502,402 - 3,696,144 (+)RGD
Celera122,270,772 - 2,437,811 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248743   ⟹   XP_006248805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,196,764 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248749   ⟹   XP_006248811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,106,415 (-)NCBI
Rnor_5.0121,007,710 - 1,397,907 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768989   ⟹   XP_008767211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,068,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768990   ⟹   XP_008767212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,076,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768991   ⟹   XP_008767213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,051,993 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598423   ⟹   XP_017453912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,350,305 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598424   ⟹   XP_017453913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,418,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598425   ⟹   XP_017453914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,377,620 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598426   ⟹   XP_017453915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,418,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598427   ⟹   XP_017453916
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,355,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598428   ⟹   XP_017453917
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,237,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598429   ⟹   XP_017453918
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,023,494 - 1,237,925 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001102530   ⟸   NM_001109060
- UniProtKB: T2CBG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248805   ⟸   XM_006248743
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248811   ⟸   XM_006248749
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008767212   ⟸   XM_008768990
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008767211   ⟸   XM_008768989
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008767213   ⟸   XM_008768991
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453913   ⟸   XM_017598424
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453915   ⟸   XM_017598426
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453914   ⟸   XM_017598425
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453916   ⟸   XM_017598427
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453912   ⟸   XM_017598423
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453917   ⟸   XM_017598428
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017453918   ⟸   XM_017598429
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000001446   ⟸   ENSRNOT00000001446
Protein Domains
Rho-GAP   START

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698361
Promoter ID:EPDNEW_R8886
Type:initiation region
Name:Stard13_1
Description:StAR-related lipid transfer domain containing 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,195,556 - 1,195,616EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
12 1012386 1012387 C T snv IS/Kyo (KyushuU)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
12 1028091 1028092 G A snv WN/N (MCW), F344/NRrrc (MCW), MR/N (MCW), WKY/N (MCW), M520/N (MCW)
12 1028098 1028099 A G snv F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), WN/N (MCW), WKY/N (MCW), MR/N (MCW)
12 1030798 1030799 T C snv M520/N (MCW), F344/NRrrc (MCW), ACI/N (MCW), WKY/N (MCW), MR/N (MCW), WN/N (MCW)
12 1030807 1030808 A C snv F344/NRrrc (MCW), Buf/N (MCW), MR/N (MCW), WN/N (MCW), ACI/N (MCW)
12 1038834 1038835 G A snv MR/N (MCW), M520/N (MCW), F344/NRrrc (MCW), WKY/N (MCW), WN/N (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564816 AgrOrtholog
Ensembl Genes ENSRNOG00000001090 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001446 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001446 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
InterPro Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  START-like_dom UniProtKB/TrEMBL
  START_lipid-bd UniProtKB/TrEMBL
KEGG Report rno:498130 UniProtKB/TrEMBL
NCBI Gene 498130 ENTREZGENE
Pfam RhoGAP UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PhenoGen Stard13 PhenoGen
PROSITE RHOGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
Superfamily-SCOP Rho_GAP UniProtKB/TrEMBL
  SSF47769 UniProtKB/TrEMBL
UniGene Rn.26672 ENTREZGENE
UniProt D3ZU63_RAT UniProtKB/TrEMBL
  T2CBG9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Stard13  StAR-related lipid transfer domain containing 13  Stard13  StAR-related lipid transfer (START) domain containing 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Stard13  StAR-related lipid transfer (START) domain containing 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Stard13  StAR-related lipid transfer (START) domain containing 13  RGD1564816_predicted  similar to Serologically defined colon cancer antigen 13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564816_predicted  similar to Serologically defined colon cancer antigen 13 (predicted)  LOC498130  similar to Serologically defined colon cancer antigen 13  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498130  similar to Serologically defined colon cancer antigen 13      Symbol and Name status set to provisional 70820 PROVISIONAL