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Gene: Ubp1 (upstream binding protein 1) Rattus norvegicus
Symbol: Ubp1
Name: upstream binding protein 1
RGD ID: 1564700
Description: Predicted to have DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to be involved in angiogenesis and regulation of transcription by RNA polymerase II. Predicted to localize to cytosol and nucleoplasm. Orthologous to human UBP1 (upstream binding protein 1); INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC301038; RGD1564700; similar to CP2B; upstream binding protein 1 (LBP-1a); upstream-binding protein 1
Homo sapiens (human) : UBP1 (upstream binding protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Ubp1 (upstream binding protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ubp1 (upstream binding protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : UBP1 (upstream binding protein 1)
Canis lupus familiaris (dog) : UBP1 (upstream binding protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ubp1 (upstream binding protein 1)
Sus scrofa (pig) : UBP1 (upstream binding protein 1)
Chlorocebus sabaeus (African green monkey) : UBP1 (upstream binding protein 1)
Heterocephalus glaber (naked mole-rat) : Ubp1 (upstream binding protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)

References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Ubp1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564700
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.