Ubl5 (ubiquitin-like 5) - Rat Genome Database

Name: Ubl5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ubl5 (ubiquitin-like 5) Rattus norvegicus

Analyze

Symbol:

Ubl5

Name:

ubiquitin-like 5

RGD ID:

1564644

Description:

Predicted to enable protein tag. Predicted to be involved in mRNA splicing, via spliceosome and positive regulation of protein targeting to mitochondrion. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBL5 (ubiquitin like 5); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beacon; LOC500954; Ubiquitin-Like 5 Protein; ubiquitin-like protein 5

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBL5 (ubiquitin like 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ubl5 (ubiquitin-like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ubl5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBL5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBL5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ubl5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBL5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBL5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ubl5 (ubiquitin like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UBL5 (ubiquitin like 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ubl5 (ubiquitin-like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:66388	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HUB1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ubl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubl-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ubl5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	19,183,437 - 19,185,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,181,615 - 19,185,217 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,201,812 - 23,205,536 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,499,651 - 21,503,375 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	19,411,250 - 19,414,970 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	21,663,257 - 21,665,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	21,663,325 - 21,665,038 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	21,719,122 - 21,721,110 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	19,663,626 - 19,665,339 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	20,578,802 - 20,580,515 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

aconitine (EXP)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

clobetasol (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

folic acid (ISO)

glafenine (EXP)

ivermectin (ISO)

paracetamol (ISO)

phenytoin (EXP)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sulindac (EXP)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

toluene (EXP)

trichloroethene (EXP)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA)

positive regulation of protein targeting to mitochondrion (ISO)

protein modification process (IEA)

Cellular Component

cytoplasm (IBA,ISO)

nucleus (IBA)

Molecular Function

protein binding (ISO)

protein tag (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11161819	PMID:15942675	PMID:16157417	PMID:17097194	PMID:24270810

Genomics

Comparative Map Data

Ubl5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	19,183,437 - 19,185,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,181,615 - 19,185,217 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,201,812 - 23,205,536 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,499,651 - 21,503,375 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	19,411,250 - 19,414,970 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	21,663,257 - 21,665,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	21,663,325 - 21,665,038 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	21,719,122 - 21,721,110 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	19,663,626 - 19,665,339 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	20,578,802 - 20,580,515 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

UBL5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	9,827,918 - 9,830,115 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	19	9,827,892 - 9,830,115 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	9,938,594 - 9,940,791 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	9,799,568 - 9,801,797 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	9,799,613 - 9,801,791	NCBI
Celera	19	9,833,993 - 9,836,222 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	9,519,189 - 9,521,430 (+)	NCBI		HuRef
CHM1_1	19	9,938,269 - 9,940,510 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	9,953,519 - 9,956,279 (+)	NCBI		T2T-CHM13v2.0

Ubl5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	20,554,013 - 20,558,436 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	20,554,174 - 20,558,436 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	20,642,717 - 20,647,140 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	20,642,878 - 20,647,140 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	20,447,762 - 20,451,233 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	20,393,720 - 20,397,191 (+)	NCBI		MGSCv36	mm8
Celera	9	17,913,763 - 17,917,234 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI

Ubl5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,242,733 - 1,244,238 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,242,733 - 1,244,238 (+)	NCBI	ChiLan1.0	ChiLan1.0

UBL5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	19	13,749,258 - 13,751,463 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	9,382,423 - 9,384,710 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,045,605 - 10,047,697 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,045,636 - 10,047,697 (+)	Ensembl	panpan1.1		panPan2

UBL5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	51,174,741 - 51,176,401 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	51,174,741 - 51,176,292 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	51,038,534 - 51,040,198 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,696,125 - 51,697,789 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,696,125 - 51,697,676 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,903,731 - 50,905,395 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	51,328,193 - 51,329,859 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,569,994 - 51,571,658 (-)	NCBI		UU_Cfam_GSD_1.0

Ubl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	210,049,581 - 210,051,242 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	303,252 - 305,122 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936659	303,279 - 305,125 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBL5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	68,706,197 - 68,708,011 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	68,702,478 - 68,708,012 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,035,905 - 69,037,795 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBL5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	8,899,889 - 8,902,462 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	8,899,970 - 8,902,459 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	11,187,078 - 11,189,647 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ubl5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,112,794 - 2,114,392 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,112,694 - 2,114,392 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ubl5
2 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	79
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000027749
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat

Markers in Region

RH130060

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,184,054 - 19,185,164 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	21,663,883 - 21,664,992	NCBI	Rnor6.0
Rnor_5.0	8	21,719,944 - 21,721,053	UniSTS	Rnor5.0
RGSC_v3.4	8	19,664,184 - 19,665,293	UniSTS	RGSC3.4
Celera	8	20,579,360 - 20,580,469	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001048243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC157818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB713235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000027749 ⟹ ENSRNOP00000027749

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	21,663,325 - 21,665,038 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101563 ⟹ ENSRNOP00000097218

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,181,615 - 19,185,217 (+)	Ensembl

RefSeq Acc Id:

NM_001048243 ⟹ NP_001041708

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	19,183,497 - 19,185,210 (+)	NCBI
Rnor_6.0	8	21,663,325 - 21,665,038 (+)	NCBI
Rnor_5.0	8	21,719,122 - 21,721,110 (+)	NCBI
RGSC_v3.4	8	19,663,626 - 19,665,339 (+)	RGD
Celera	8	20,578,802 - 20,580,515 (+)	RGD

Sequence:

show sequence

GTCGCTAGGTTCGAGGACATTGGAGGTGAGAAGGCTAAACGGAGAGGCCGGAGATCGCGGGAAG
CTGCCAAGACTTGGGAGCCTAGGGGTTGCGGGAGGCAAAGCCGGCTCCAGCCACAATGATTGAG
GTGGTTTGCAACGACCGTCTAGGAAAGAAAGTCCGCGTTAAGTGCAACACCGATGACACCATCG
GCGACCTGAAGAAACTGATAGCGGCTCAAACTGGCACCCGCTGGAATAAGATCGTTCTTAAAAA
GTGGTACACGATTTTTAAAGACCACGTGTCTCTGGGAGACTATGAGATCCACGACGGGATGAAC
CTGGAGCTTTATTACCAGTAGAGGGGACTCCTCCCTCCTCCCCTCGTCTCCCTGCTCTGCCCTG
CCTTCCCCTCCCTCCCTCATTTGACACTGGTATAGATGGTCATTTTTAACAGTTCACATGAATA
AAATTTTGCTGCTGCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG

hide sequence

RefSeq Acc Id:

XM_006242661 ⟹ XP_006242723

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	19,183,437 - 19,185,223 (+)	NCBI
Rnor_6.0	8	21,663,257 - 21,665,049 (+)	NCBI
Rnor_5.0	8	21,719,122 - 21,721,110 (+)	NCBI

Sequence:

show sequence

TCACTTCCGCTTCCTGTTTCCAGCCCTAAATCCGGTCAGGATTCAGCGTTCGAGCTACAAGTTG
TGTCGTCGCTAGGTTCGAGGACATTGGAGCTCCAGCCACAATGATTGAGGTGGTTTGCAACGAC
CGTCTAGGAAAGAAAGTCCGCGTTAAGTGCAACACCGATGACACCATCGGCGACCTGAAGAAAC
TGATAGCGGCTCAAACTGGCACCCGCTGGAATAAGATCGTTCTTAAAAAGTGGTACACGATTTT
TAAAGACCACGTGTCTCTGGGAGACTATGAGATCCACGACGGGATGAACCTGGAGCTTTATTAC
CAGTAGAGGGGACTCCTCCCTCCTCCCCTCGTCTCCCTGCTCTGCCCTGCCTTCCCCTCCCTCC
CTCATTTGACACTGGTATAGATGGTCATTTTTAACAGTTCACATGAATAAAATTTTGCTGCTGC
TTTGCTGCTGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001041708	(Get FASTA)	NCBI Sequence Viewer
	NP_001380811	(Get FASTA)	NCBI Sequence Viewer
	NP_001380812	(Get FASTA)	NCBI Sequence Viewer
	XP_006242723	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI57819	(Get FASTA)	NCBI Sequence Viewer
	EDL78358	(Get FASTA)	NCBI Sequence Viewer
	EDL78359	(Get FASTA)	NCBI Sequence Viewer
	EDL78360	(Get FASTA)	NCBI Sequence Viewer
	EDL78361	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001041708 ⟸ NM_001048243
- UniProtKB:	A9UMW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHD GMNLELYYQ hide sequence

RefSeq Acc Id:	XP_006242723 ⟸ XM_006242661
- Peptide Label:	isoform X1
- UniProtKB:	A9UMW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHD GMNLELYYQ hide sequence

RefSeq Acc Id:

ENSRNOP00000027749 ⟸ ENSRNOT00000027749

RefSeq Acc Id:

ENSRNOP00000097218 ⟸ ENSRNOT00000101563

Protein Domains

Ubiquitin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A9UMW0-F1-model_v2	AlphaFold	A9UMW0	1-73	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695760

Promoter ID:

EPDNEW_R6285

Type:

initiation region

Name:

Ubl5_1

Description:

ubiquitin-like 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	21,663,290 - 21,663,350	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564644	AgrOrtholog
BioCyc Gene	G2FUF-31467	BioCyc
Ensembl Genes	ENSRNOG00000020442	Ensembl
	ENSRNOG00000069661	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000097218.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000101563.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7936655	IMAGE-MGC_LOAD
InterPro	Hub1/Ubl5	UniProtKB/TrEMBL
	Ubiquitin	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
KEGG Report	rno:500954	UniProtKB/TrEMBL
MGC_CLONE	MGC:188356	IMAGE-MGC_LOAD
NCBI Gene	500954	ENTREZGENE
PANTHER	PTHR13042	UniProtKB/TrEMBL
	UBIQUITIN-LIKE PROTEIN 5	UniProtKB/TrEMBL
Pfam	ubiquitin	UniProtKB/TrEMBL
PhenoGen	Ubl5	PhenoGen
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I6AUP1_RAT	UniProtKB/TrEMBL
	A9UMW0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ubl5	ubiquitin-like 5	LOC500954	Ubiquitin-Like 5 Protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500954	Ubiquitin-Like 5 Protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar