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Gene: Hmgb3 (high mobility group box 3) Rattus norvegicus
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Symbol: Hmgb3
Name: high mobility group box 3
Description: Predicted to have nucleic acid binding activity and transcription factor binding activity. Predicted to be involved in several processes, including DNA geometric change; negative regulation of hemopoiesis; and positive regulation of transcription by RNA polymerase II. Predicted to localize to the cytoplasm and nuclear chromatin. Human ortholog(s) of this gene implicated in microphthalmia. Orthologous to human HMGB3 (high mobility group box 3); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; chlorpyrifos.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: high mobility group protein B3; LOC305373; RGD1564407; similar to high mobility group protein homolog HMG4
Orthologs:
Homo sapiens (human) : HMGB3 (high mobility group box 3)  HGNC  Alliance
Mus musculus (house mouse) : Hmgb3 (high mobility group box 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hmgb3 (high mobility group box 3)
Pan paniscus (bonobo/pygmy chimpanzee) : HMGB3 (high mobility group box 3)
Canis lupus familiaris (dog) : HMGB3 (high mobility group box 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hmgb3 (high mobility group box 3)
Sus scrofa (pig) : HMGB3 (high mobility group box 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01736,690,190 - 36,694,329 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1736,690,249 - 36,694,325 (+)Ensembl
Rnor_6.0 Ensembl1451,458,443 - 51,462,721 (-)Ensembl
Rnor_5.01451,617,771 - 51,622,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X157,027,845 - 157,033,080 (+)NCBIRGSC3.4rn4RGSC3.4
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hmgb3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564407
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.