Txlng (taxilin gamma) - Rat Genome Database

Name: Txlng
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Txlng (taxilin gamma) Rattus norvegicus

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Symbol:

Txlng

Name:

taxilin gamma

RGD ID:

1564371

Description:

Predicted to enable DNA-binding transcription factor binding activity. Predicted to be involved in regulation of bone mineralization and regulation of cell cycle process. Predicted to be located in cytosol and nuclear membrane. Orthologous to human TXLNG (taxilin gamma); INTERACTS WITH bisphenol A; cadmium dichloride; furan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

gamma-taxilin; hypothetical protein LOC302680; LOC302680; MGC116250; similar to CXORF15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TXLNG (taxilin gamma)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Txlng (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Txlng (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TXLNG (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TXLNG (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Txlng (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TXLNG (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TXLNG (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Txlng (taxilin gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TXLNG (taxilin gamma)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Txlng (taxilin gamma)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	txlng (taxilin gamma)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T22C1.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5886	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	txlng	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	35,495,822 - 35,544,716 (+)	NCBI		GRCr8
mRatBN7.2	X	31,864,111 - 31,912,931 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	31,864,111 - 31,912,926 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	32,898,409 - 32,947,222 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	36,333,908 - 36,382,737 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	32,522,807 - 32,571,628 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	33,599,643 - 33,648,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	33,599,671 - 33,646,444 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	33,946,641 - 33,995,516 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	52,620,725 - 52,658,066 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	32,168,298 - 32,205,130 (+)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Neurodevelopmental Disorders (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ketoconazole (ISO)

paracetamol (EXP)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of bone mineralization (ISO)

regulation of cell cycle (IBA,ISO)

regulation of cell cycle process (ISO)

Cellular Component

cytosol (ISO)

nuclear membrane (ISO)

Molecular Function

DNA-binding transcription factor binding (ISO)

protein binding (ISO)

syntaxin binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15911876	PMID:18068885	PMID:19016261	PMID:19913514

Genomics

Comparative Map Data

Txlng
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	35,495,822 - 35,544,716 (+)	NCBI		GRCr8
mRatBN7.2	X	31,864,111 - 31,912,931 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	31,864,111 - 31,912,926 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	32,898,409 - 32,947,222 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	36,333,908 - 36,382,737 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	32,522,807 - 32,571,628 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	33,599,643 - 33,648,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	33,599,671 - 33,646,444 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	33,946,641 - 33,995,516 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	52,620,725 - 52,658,066 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	32,168,298 - 32,205,130 (+)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

TXLNG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	16,786,466 - 16,844,519 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	16,786,432 - 16,844,519 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	16,804,589 - 16,862,642 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	16,714,481 - 16,770,217 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	16,564,216 - 16,619,953	NCBI
Celera	X	20,923,271 - 20,981,574 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	14,564,993 - 14,623,164 (+)	NCBI		HuRef
CHM1_1	X	16,834,994 - 16,893,068 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	16,368,976 - 16,427,050 (+)	NCBI		T2T-CHM13v2.0

Txlng
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	161,561,913 - 161,612,450 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	161,561,915 - 161,612,450 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	162,778,917 - 162,829,454 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	162,778,919 - 162,829,454 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	159,216,851 - 159,267,331 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	158,123,024 - 158,173,504 (-)	NCBI		MGSCv36	mm8
Celera	X	146,004,120 - 146,053,747 (-)	NCBI		Celera
Cytogenetic Map	X	F4	NCBI
cM Map	X	74.99	NCBI

Txlng
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	1,484,782 - 1,536,659 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955519	1,484,782 - 1,536,278 (-)	NCBI	ChiLan1.0	ChiLan1.0

TXLNG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	18,581,957 - 18,638,062 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	18,585,353 - 18,643,780 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	9,407,049 - 9,465,452 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	16,776,019 - 16,834,676 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	16,776,076 - 16,831,926 (+)	Ensembl	panpan1.1		panPan2

TXLNG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	12,924,612 - 12,980,926 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	12,924,672 - 12,978,346 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	12,775,968 - 12,832,274 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	12,887,886 - 12,943,971 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	12,887,877 - 12,943,971 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	12,955,717 - 13,011,789 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	12,942,053 - 12,998,125 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	13,010,709 - 13,066,592 (+)	NCBI		UU_Cfam_GSD_1.0

Txlng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	6,054,056 - 6,107,613 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	6,053,905 - 6,109,437 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	6,054,076 - 6,107,613 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TXLNG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	13,229,754 - 13,290,147 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	13,229,680 - 13,292,371 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	14,225,213 - 14,287,917 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TXLNG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	15,213,058 - 15,268,388 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	15,213,156 - 15,265,635 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	17,067,225 - 17,122,941 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Txlng
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	1,497,546 - 1,542,025 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624829	1,497,646 - 1,544,635 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Txlng
206 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	578
Count of miRNA genes:	267
Interacting mature miRNAs:	346
Transcripts:	ENSRNOT00000006843
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat

Markers in Region

AU048491

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,881,490 - 31,881,656 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,617,319 - 33,617,484	NCBI	Rnor6.0
Rnor_5.0	X	33,964,310 - 33,964,475	UniSTS	Rnor5.0
RGSC_v3.4	X	52,638,093 - 52,638,258	UniSTS	RGSC3.4
Celera	X	32,185,489 - 32,185,654	UniSTS
Cytogenetic Map	X	q21	UniSTS

AU049069

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,883,234 - 31,883,412 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,619,062 - 33,619,237	NCBI	Rnor6.0
Rnor_5.0	X	33,966,053 - 33,966,228	UniSTS	Rnor5.0
RGSC_v3.4	X	52,639,837 - 52,640,012	UniSTS	RGSC3.4
Celera	X	32,187,233 - 32,187,408	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001398782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006843 ⟹ ENSRNOP00000006843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,864,111 - 31,912,926 (+)	Ensembl
Rnor_6.0 Ensembl	X	33,599,671 - 33,646,444 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095191 ⟹ ENSRNOP00000094544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,882,063 - 31,912,926 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102906 ⟹ ENSRNOP00000086779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,864,111 - 31,912,926 (+)	Ensembl

RefSeq Acc Id:

NM_001037187 ⟹ NP_001032264

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,495,902 - 35,533,236 (+)	NCBI
mRatBN7.2	X	31,864,111 - 31,901,450 (+)	NCBI
Rnor_6.0	X	33,599,705 - 33,637,045 (+)	NCBI
Rnor_5.0	X	33,946,641 - 33,995,516 (+)	NCBI
RGSC_v3.4	X	52,620,725 - 52,658,066 (+)	RGD
Celera	X	32,168,298 - 32,205,130 (+)	RGD

Sequence:

show sequence

CTCATGGCGACTCGGCTTGAGGAGGCAACGCGGGGAAGAGGCGGCGGTACTGAGGAGGCTATTG
AGGGCGGACCGGGCGGACGGGGCGGACGGCGACGCAGCCCCCCGGAGAAGTTTGAAATTGGTAC
AATGGAAGAAGCTAGAATTTGTGAGTTAGGAGTAAAAGCAGACATGGTATGTAAGTCTCAAGCA
AATGATATTCTTCAGCATCAAGACTCCAGTTGTGGTGGTACAACTAAGAAGCATTCACTGGAAG
GGGATGAAGGCAGTGACTTTGTAACGAACACCAGAAATTTGGTGAGCTCAGTATTCTGTACCCA
GGAGACAAGAGAAGAAATTCCTGGACGAGAAGCTCGAACAGGTCCTCCTGATGGCCAGCAAGAT
TCAGAGTGCAGCAGGAACAAAGAGAAGACCTTAGGAAAAGAAGTTTTATTACTGATGCAAGCGC
TAAACACCCTTTCAACCCCAGAGGAAAAGCTGGCGGCTCTGTGTAAGAAATATGCTGATCTCCT
GGAAGAAAGCAGGAATGTTCAGAAACAAATGAAGATTCTTCAGAAGAAGCAAGCCCAGATCGTG
AAAGAGAAAGTTCACCTTCAAAGTGAACACAGCAAGGCCATCTTGGCAAGAAGCAAACTGGAGT
CTCTTTGCAGGGAACTTCAACGTCATAATAAGACCTTAAAGGAGGAAAATATGCAGCAGGCACG
AGAGGAGGAAGAACGGCGGAAGGAAGCAACAGCACATTTCCAGATAACTCTCAATGAAATCCAA
GCTCAGTTGGAACAACATGACATACACAATGCCAAACTGCGACAGGAGAACATTGAACTGGGAG
AGAAGCTGAAGAAACTTATTGAGCAGTATGCGCTAAGGGAAGAGGTAATAGCACTAAGTTGTTC
TGTACTGCTTCTCACTGTTAGTAGCGACTTTGTTCACTGCTGCAGGATACTTTAATCTTATGTC
CATGTGTAGCAGAAGTGTGGTTATTGACTAGGGAAAGAATCAAACCACTGCATAACCAGAAGGA
TTGAGAATCTATCTGCATGAATAGGTAAGGTAATTCCAGGTTCCATGTACCTGGAATTAAATAC
CAGTTCCATGTAATACTAGAAGATGGCGATTCTTATAACACAGATTGTTTTCTTATCTTGACTA
ATAACCACTAAATATTTGGCCCTAGAATACCCTGCTTCTCAAACATTTGAGATTATACAGTATC
TGTAGCTATTTTATTATGTCTTTGTTTCAGGGTTTAGCTTAGTTGTTTTTTGTTTGTTTGTTTT
ATTATTCAGATTAGGTTTTGCTTATCACCATGGGTGGCTTCTAGTTCATGGACTTAAATAGATC
CTCGTGTTTGAACCTCCCAGGTAGCTGACTACAGGCATGTGTAAAATATGCCCAGCTTTACATG
TAAAAACCTAATTTCTTTTTTACTTAGGTTTTTGGTTAATTGCGCCATTGGTTAAATCCAGGGC
CTTGGCCATACTCTGAGGGCTTCTGCTACTGAATAGCTTCTTTCGACCTTACTTTTTTATTTAT
TTTTAAATGCTGAAATCAATCCCATGGACCTTGTATATGCTACATATGTTTTATCATTTAACTT
ATACCACAGGCCTCTGTCCCTTTTTTTTAAAAAAAGATTTATTTATTTTATATTATGAGTACAC
TGTTGCTGTCTTCAGACATACCAGAAGAGGGCATCAGATCCCATTACAGATGATTGTGAGCCAC
CATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGA
GCCATCTCTTCAGCCCCAGGCCTCTGTCTTTTATGAGGTTCGTTTTGTTTTGCAGGAGTTGAGA
GGGTTATTTTAAGACAGGGTTTCTGTGTGTAGTCTGGTTGTCCTGGAACTCAAGTCTGTAAGAC
AGATCTGCCTGCCCCTGATTCCTGAATATTGGAATGAAAGGCATGTGCCACCACTCCTGGCCTT
TTGTGAGTTTTATATTGTTTTAGGTATGATCTTTATCTGTGGCCCAGGCTGGCTTGAAACTCAC
TGTATCCCTGGCTGGCCTGGAACTCACGGCCAATGTAGTCTTTGTTTCCTCAGTGCTAAGATTT
CAGGTGTCTAGGATTTTTTTTTCAGTCAGTGTCTCACTATGGCCTTGAACACTTTTTAAGTTTT
TAAGTCTATTTTAAATCATATGTTTGTCTTTGTCTGGTTATGGATTTGGAGTGCAGTGGCTACA
GTGGCCCAAAGAGGATATTAGATCACTTTCAACTGAAATGACAGGTGCTTGAGATATGCCCAAG
GATCTGCAATCCAAGCTCAGAACAGTACTTGCATTTAATTCCCAAGCCGTTTCCCTAGCTCTTG
TCTTGAACTCATTGAAAAAACTTATTTTATGTGTATGGATGTTCTGTTCACATGTGTCTGTGCA
CATGTGCCTGGTGCCCAAGGAGGCAAGAAGGGTATCAGATCCTCTGAAACTGGAGTCAGCACAT
GGTTGCAAGCCACCATGTAAATGCTAGAATTCAAACCAGATTTCTCTGGAAGAGCAGCAGTCTT
AACCACTGAGCCATCTCTCCGGCCCCATTTGTAGATATTTAGTGTATAAATCAGAAAATTCTTT
TTGACCATGTCATTTTCTCATCTAAAAAGTGGTTATTTAATGCTCAATCCAATCACTGCTAGAA
TATATCTGCTTTTCTTTTAAAATGTTATGTGTGTGGGTGCTCCAAGAGGTCAGAAGAAGATATT
GGAGTCCCTGGAACTGGAATTATATGCAGTTGTGAGCTGCCCATTGTTGGGTCCTCTGCAAGAG
CAACAACAAGAAGAGCAGCAAGAGCTCTTAACCATTCCTATTTTTCTGTTATTAAAAACAAAGA
ATTAAGAACCAAATAAAGCCTATCTGTTTATTAGTTTATGTCTCATCACCAAAATCTAAGATTT
CTTGTCCTGTTTTATTATTGAGAGCTTATTTTGTGGTTTTGTTGTCATACAGGCTAAAATTTAT
TATTAAATTATTCAAGACCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001398782 ⟹ NP_001385711

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,495,902 - 35,544,716 (+)	NCBI
mRatBN7.2	X	31,864,111 - 31,912,931 (+)	NCBI

RefSeq Acc Id:

XM_063279937 ⟹ XP_063136007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,496,022 - 35,544,716 (+)	NCBI

RefSeq Acc Id:

XM_063279938 ⟹ XP_063136008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,495,822 - 35,539,026 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032264	(Get FASTA)	NCBI Sequence Viewer
	NP_001385711	(Get FASTA)	NCBI Sequence Viewer
	XP_063136007	(Get FASTA)	NCBI Sequence Viewer
	XP_063136008	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99110	(Get FASTA)	NCBI Sequence Viewer
	EDL90493	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006843.6
	ENSRNOP00000086779.1
	ENSRNOP00000094544.1

RefSeq Acc Id:	NP_001032264 ⟸ NM_001037187
- Peptide Label:	isoform 2
- UniProtKB:	Q4FZU5 (UniProtKB/TrEMBL), E9PSU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATRLEEATRGRGGGTEEAIEGGPGGRGGRRRSPPEKFEIGTMEEARICELGVKADMVCKSQAN DILQHQDSSCGGTTKKHSLEGDEGSDFVTNTRNLVSSVFCTQETREEIPGREARTGPPDGQQDS ECSRNKEKTLGKEVLLLMQALNTLSTPEEKLAALCKKYADLLEESRNVQKQMKILQKKQAQIVK EKVHLQSEHSKAILARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLNEIQA QLEQHDIHNAKLRQENIELGEKLKKLIEQYALREEVIALSCSVLLLTVSSDFVHCCRIL hide sequence

Ensembl Acc Id:

ENSRNOP00000006843 ⟸ ENSRNOT00000006843

Ensembl Acc Id:

ENSRNOP00000086779 ⟸ ENSRNOT00000102906

Ensembl Acc Id:

ENSRNOP00000094544 ⟸ ENSRNOT00000095191

RefSeq Acc Id:	NP_001385711 ⟸ NM_001398782
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2QC39 (UniProtKB/TrEMBL), A0A8I6AMF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136008 ⟸ XM_063279938
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136007 ⟸ XM_063279937
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AMF7 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC39-F1-model_v2	AlphaFold	A0A0G2QC39	1-530	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701809

Promoter ID:

EPDNEW_R12329

Type:

multiple initiation site

Name:

Txlng_1

Description:

taxilin gamma

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	33,599,682 - 33,599,742	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564371	AgrOrtholog
BioCyc Gene	G2FUF-2536	BioCyc
Ensembl Genes	ENSRNOG00000004971	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006843.7	UniProtKB/TrEMBL
	ENSRNOT00000095191.1	UniProtKB/TrEMBL
	ENSRNOT00000102906.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7461546	IMAGE-MGC_LOAD
InterPro	Taxilin_fam	UniProtKB/TrEMBL
KEGG Report	rno:302680	UniProtKB/TrEMBL
MGC_CLONE	MGC:116250	IMAGE-MGC_LOAD
NCBI Gene	302680	ENTREZGENE
PANTHER	GAMMA-TAXILIN	UniProtKB/TrEMBL
	PTHR16127	UniProtKB/TrEMBL
Pfam	Taxilin	UniProtKB/TrEMBL
PhenoGen	Txlng	PhenoGen
RatGTEx	ENSRNOG00000004971	RatGTEx
UniProt	A0A0G2QC39	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A1X6_RAT	UniProtKB/TrEMBL
	A0A8I6AMF7	ENTREZGENE, UniProtKB/TrEMBL
	E9PSU4	ENTREZGENE
	Q4FZU5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	E9PSU4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-25	Txlng	taxilin gamma	LOC302680	similar to CXORF15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC302680	similar to CXORF15			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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