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Gene: Col20a1 (collagen type XX alpha 1 chain) Rattus norvegicus
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Symbol: Col20a1
Name: collagen type XX alpha 1 chain
Description: Predicted to be involved in growth plate cartilage chondrocyte morphogenesis. Predicted to localize to collagen-containing extracellular matrix and extracellular space. Orthologous to human COL20A1 (collagen type XX alpha 1 chain); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XX) chain; collagen, type XX, alpha 1; LOC311716; RGD1563901; similar to Protein KIAA1510 precursor
Orthologs:
Homo sapiens (human) : COL20A1 (collagen type XX alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col20a1 (collagen, type XX, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col20a1 (collagen type XX alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL20A1 (collagen type XX alpha 1 chain)
Canis lupus familiaris (dog) : COL20A1 (collagen type XX alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col20a1 (collagen type XX alpha 1 chain)
Sus scrofa (pig) : COL20A1 (collagen type XX alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL20A1 (collagen type XX alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col20a1 (collagen type XX alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03176,491,292 - 176,526,009 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,494,768 - 176,526,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,201,099 - 180,235,836 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,105,596 - 170,136,828 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3164,450,199 - 164,484,907 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col20a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563901
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.