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Gene: Col20a1 (collagen type XX alpha 1 chain) Rattus norvegicus
Symbol: Col20a1
Name: collagen type XX alpha 1 chain
Description: Predicted to be involved in growth plate cartilage chondrocyte morphogenesis. Predicted to localize to collagen-containing extracellular matrix and extracellular space. Orthologous to human COL20A1 (collagen type XX alpha 1 chain); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XX) chain; collagen, type XX, alpha 1; LOC311716; RGD1563901; similar to Protein KIAA1510 precursor
Homo sapiens (human) : COL20A1 (collagen type XX alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col20a1 (collagen, type XX, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col20a1 (collagen type XX alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL20A1 (collagen type XX alpha 1 chain)
Canis lupus familiaris (dog) : COL20A1 (collagen type XX alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col20a1 (collagen type XX alpha 1 chain)
Sus scrofa (pig) : COL20A1 (collagen type XX alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL20A1 (collagen type XX alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col20a1 (collagen type XX alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.03176,491,292 - 176,526,009 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,494,768 - 176,526,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,201,099 - 180,235,836 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,105,596 - 170,136,828 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3164,450,199 - 164,484,907 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Col20a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563901
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.