Tpt1-ps2 (tumor protein, translationally-controlled 1 pseudogene 2) - Rat Genome Database

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Gene: Tpt1-ps2 (tumor protein, translationally-controlled 1 pseudogene 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tpt1-ps2
Name: tumor protein, translationally-controlled 1 pseudogene 2
RGD ID: 1563739
Description: ENCODES a protein that exhibits calcium ion binding (inferred); FOUND IN cytoplasm (inferred)
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC289930; RGD1563739; similar to tumor protein, translationally-controlled 1; translationally-controlled tumor protein-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Tpt1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81516,230,762 - 16,231,508 (-)NCBIGRCr8
mRatBN7.21513,800,387 - 13,801,133 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1513,800,641 - 13,801,093 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1515,928,663 - 15,929,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01516,887,085 - 16,887,831 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01515,141,946 - 15,142,692 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01513,884,139 - 13,884,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01517,898,238 - 17,898,836 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41515,653,977 - 15,654,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1513,793,228 - 13,793,695 (-)NCBICelera
Cytogenetic Map15p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000096418   ⟹   ENSRNOP00000087568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1513,800,641 - 13,801,093 (-)Ensembl
RefSeq Acc Id: XM_039094063   ⟹   XP_038949991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21513,800,641 - 13,801,093 (-)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000087568.1
Reference Protein Sequences
RefSeq Acc Id: XP_038949991   ⟸   XM_039094063
RefSeq Acc Id: ENSRNOP00000087568   ⟸   ENSRNOT00000096418
Protein Domains
TCTP

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14343 BioCyc
Ensembl Genes ENSRNOG00000070732 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096418.1 UniProtKB/TrEMBL
InterPro Mss4-like_sf UniProtKB/TrEMBL
  Mss4/transl-control_tumour UniProtKB/TrEMBL
  TCTP UniProtKB/TrEMBL
  Translational_control_tumour_p UniProtKB/TrEMBL
NCBI Gene 289930 ENTREZGENE
PANTHER PTHR11991 UniProtKB/TrEMBL
  TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN UniProtKB/TrEMBL
Pfam TCTP UniProtKB/TrEMBL
PhenoGen Tpt1-ps2 PhenoGen
PRINTS TCTPROTEIN UniProtKB/TrEMBL
PROSITE TCTP_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070732 RatGTEx
Superfamily-SCOP SSF51316 UniProtKB/TrEMBL
UniProt A0A8I6A817_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tpt1-ps2  tumor protein, translationally-controlled 1 pseudogene 2  RGD1563739  similar to tumor protein, translationally-controlled 1  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1563739  similar to tumor protein, translationally-controlled 1  RGD1563739  similar to tumor protein, translationally-controlled 1  Data merged from RGD:149736325 737654 PROVISIONAL
2021-08-09 RGD1563739  similar to tumor protein, translationally-controlled 1      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1563739  similar to tumor protein, translationally-controlled 1   RGD1563739_predicted  similar to tumor protein, translationally-controlled 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563739_predicted  similar to tumor protein, translationally-controlled 1 (predicted)  LOC289930  similar to tumor protein, translationally-controlled 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC289930  similar to tumor protein, translationally-controlled 1      Symbol and Name status set to provisional 70820 PROVISIONAL